GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000385-TA|BGIBMGA000385-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine, IPR001314|Peptidase S1A, chymotrypsin
         (297 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0262 + 15968884-15969687                                         30   2.6  
10_08_0549 + 18696903-18698330                                         29   5.9  
05_01_0150 + 1000613-1001275                                           29   5.9  
01_03_0224 + 13940419-13941786                                         28   7.8  

>03_03_0262 + 15968884-15969687
          Length = 267

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/61 (26%), Positives = 19/61 (31%)

Query: 39  GRAVLQAMPPPAPAIHHEDYRMAPTAHSCGRLGRYRGSVAAXXXXXXXXXXXXXXXXPAP 98
           G A     PPP P+ HH+     P   S G +      V A                P P
Sbjct: 175 GGAAAATPPPPPPSSHHQQQPAFPPQPSAGPIAGVAAVVEAARIAALRRLLGCGGATPPP 234

Query: 99  P 99
           P
Sbjct: 235 P 235


>10_08_0549 + 18696903-18698330
          Length = 475

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 39  GRAVLQAMPPPAPAIHHEDYRMAP 62
           GR +L+A  PP PA  H +Y   P
Sbjct: 201 GREMLEARSPPRPAFAHREYDEVP 224


>05_01_0150 + 1000613-1001275
          Length = 220

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 27 WIRNRMQKRQDPGRAVLQAMPPPAPAI-HHEDYRMAPTAHSCGRLGRY 73
          ++R+    R+  G A   A PP +PA+ HH  Y  + +A   G  G Y
Sbjct: 35 FVRSVAMARRHGGEAAAAAPPPESPAVPHHYYYNGSGSARRGGGEGWY 82


>01_03_0224 + 13940419-13941786
          Length = 455

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 40  RAVLQAMPPPAPAIHHEDYRMAPTAHSCGR 69
           R +L A  PPAPA  H +Y M       GR
Sbjct: 209 RELLDARSPPAPAFPHREYDMIDILPGGGR 238


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.138    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,935,000
Number of Sequences: 37544
Number of extensions: 428636
Number of successful extensions: 1348
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 7
length of query: 297
length of database: 14,793,348
effective HSP length: 82
effective length of query: 215
effective length of database: 11,714,740
effective search space: 2518669100
effective search space used: 2518669100
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)