GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000384-TA|BGIBMGA000384-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
         (318 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.73 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   6.8  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   9.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 16/95 (16%)

Query: 147  LIGTPDIWRPINAIASGITASEKR-----GENTKGQLEVTLLYTASEDGLNDVVQLTVNR 201
            + G  D W   N   + ITA+ +       + T   +EV L YT+  DG+          
Sbjct: 1139 IYGPSDTWFDENTKDTKITAASETILHGLKKYTNYSMEV-LAYTSGGDGVRTT------- 1190

Query: 202  LRCSVHTMQEHEKYKAPLYLKATILEANKAECFWK 236
                +H   E +  +AP+ +KA ++  +     WK
Sbjct: 1191 ---PIHCQTEQDVPEAPIAVKALVMSTDSILASWK 1222


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 156 PINAIASGITASEKRGENTKGQLE 179
           PI  +A G+  + K+ EN K + E
Sbjct: 62  PIGFVAGGVQQAGKKPENVKKEDE 85


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 154 WRPINAIASGITASEK 169
           W   NAI +GI AS K
Sbjct: 105 WNAGNAILNGIVASSK 120


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.129    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,938
Number of Sequences: 317
Number of extensions: 2650
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 318
length of database: 114,650
effective HSP length: 57
effective length of query: 261
effective length of database: 96,581
effective search space: 25207641
effective search space used: 25207641
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)