Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000384-TA|BGIBMGA000384-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
(318 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-6|AAV34793.1| 360|Caenorhabditis elegans Tryptophanyl (w... 31 1.1
U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w... 31 1.1
AB096634-1|BAC76734.1| 360|Caenorhabditis elegans tryptophanyl-... 31 1.1
Z74032-4|CAA98463.2| 404|Caenorhabditis elegans Hypothetical pr... 30 1.9
U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 4.4
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 29 4.4
L15314-2|AAF99983.1| 322|Caenorhabditis elegans Hypothetical pr... 28 7.6
>U10402-6|AAV34793.1| 360|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform b protein.
Length = 360
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 73 KRKNSKTIDTKNAKVGDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILEKRRTVG 128
K ++ +D + A + + E TG ++K + KA IA+K++ E RRT+G
Sbjct: 304 KMNLAEAVDKRLAPIRQKFEELQNTGEVDKVLTE-NGEKAREIAEKNLEEIRRTIG 358
>U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform a protein.
Length = 650
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 73 KRKNSKTIDTKNAKVGDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILEKRRTVG 128
K ++ +D + A + + E TG ++K + KA IA+K++ E RRT+G
Sbjct: 594 KMNLAEAVDKRLAPIRQKFEELQNTGEVDKVLTE-NGEKAREIAEKNLEEIRRTIG 648
>AB096634-1|BAC76734.1| 360|Caenorhabditis elegans
tryptophanyl-tRNA synthetase (mitochondrial)protein.
Length = 360
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 73 KRKNSKTIDTKNAKVGDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILEKRRTVG 128
K ++ +D + A + + E TG ++K + KA IA+K++ E RRT+G
Sbjct: 304 KMNLAEAVDKRLAPIRQKFEELQNTGEVDKVLTE-NGEKAREIAEKNLEEIRRTIG 358
>Z74032-4|CAA98463.2| 404|Caenorhabditis elegans Hypothetical
protein F35B12.5 protein.
Length = 404
Score = 30.3 bits (65), Expect = 1.9
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 15 TTLQENSWPVWNEDFKFQLK------QKEAKKSSDKIDLQNLVSGHFLSLTIYAILEPPK 68
TT +E + W + K +L+ Q+E + ++++ QNLV L + + PK
Sbjct: 123 TTTEEQAAENWRDAMKTELQTIRTEIQEETARRQEELNAQNLVKMQELMSNFFQKITIPK 182
Query: 69 QEA-DKRKNSKTIDTKNAKVGDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILEKR 124
Q+A + + K ++ + Q++P +K + EA+ +I+E+R
Sbjct: 183 QQAIEPVEKDKENFHESPRQSRQQKPASKIASAREVIKRDGVIPPEAL---TIIEQR 236
>U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical
protein T23B3.5 protein.
Length = 211
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/57 (29%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 68 KQEADKRKNSKTIDTKNAKVGDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILEKR 124
K++AD++K+ + D K + D+++ + K EK+ S K++K++ ++KS EK+
Sbjct: 119 KKDADEKKDEEKKDDKKDEKKDEKKDEKKDEKKEKSKKSKKSSKSKK-SKKSKREKK 174
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 29.1 bits (62), Expect = 4.4
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 16 TLQENSWPVWNEDFKFQLKQKEAKKSSDKIDLQNLVSGHFLSLTIYAILEPPKQEADKRK 75
T +EN+ V E+ + Q + +E KK+++ +++Q V LT + +E R
Sbjct: 1344 TREENT-NVLEEEERIQKRVEEFKKTTENLEIQKEVV-----LTKEEVDNSDVKE--HRT 1395
Query: 76 NSKTIDTKNAKV-GDQEEPKAKTGFLEKTFSSFKATKAEAIAQKS 119
++ ID + + G ++PK + + + F+ TK E AQ+S
Sbjct: 1396 SAVNIDLEKVFIHGSSKKPKNDDEKIRRGIAEFERTKQEKEAQRS 1440
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 29.1 bits (62), Expect = 4.4
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 16 TLQENSWPVWNEDFKFQLKQKEAKKSSDKIDLQNLVSGHFLSLTIYAILEPPKQEADKRK 75
T +EN+ V E+ + Q + +E KK+++ +++Q V LT + +E R
Sbjct: 1344 TREENT-NVLEEEERIQKRVEEFKKTTENLEIQKEVV-----LTKEEVDNSDVKE--HRT 1395
Query: 76 NSKTIDTKNAKV-GDQEEPKAKTGFLEKTFSSFKATKAEAIAQKS 119
++ ID + + G ++PK + + + F+ TK E AQ+S
Sbjct: 1396 SAVNIDLEKVFIHGSSKKPKNDDEKIRRGIAEFERTKQEKEAQRS 1440
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/114 (19%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 74 RKNSKTIDTKNAKVGDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILEKRRTVGAATWN 133
+K K ++ +N ++ Q+E K + + + + AE + ++++ +
Sbjct: 246 QKMEKALERENERLNHQKELSDKLKVVNEENNDLRQNLAENHLELAMIKSE--LAQVRCE 303
Query: 134 FDSKLFQNDLKNGLIGTPDIWRPINAIASGITASEKRGENTKGQLEVTLLYTAS 187
FD K + + G++ + PIN+++S AS E+ + ++ LL+ A+
Sbjct: 304 FDQKQDELSARRGILFQLE---PINSLSSSDQASHATEESESVRKQLQLLFDAN 354
>L15314-2|AAF99983.1| 322|Caenorhabditis elegans Hypothetical
protein K06H7.7 protein.
Length = 322
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/90 (21%), Positives = 39/90 (43%)
Query: 42 SDKIDLQNLVSGHFLSLTIYAILEPPKQEADKRKNSKTIDTKNAKVGDQEEPKAKTGFLE 101
+D+ + Q S LS ++++ L +++ KR+ S I+ + + +E P K F
Sbjct: 7 TDEENRQTEFSSSPLSDSVHSCLGFNRKKERKRRTSGDIEQTDKRKRTEERPSDKITFAS 66
Query: 102 KTFSSFKATKAEAIAQKSILEKRRTVGAAT 131
F + AE + + + + G T
Sbjct: 67 NVFDNLARVTAERDNPEKLSKYKNIPGVGT 96
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.314 0.129 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,579,973
Number of Sequences: 27539
Number of extensions: 299684
Number of successful extensions: 761
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 10
length of query: 318
length of database: 12,573,161
effective HSP length: 81
effective length of query: 237
effective length of database: 10,342,502
effective search space: 2451172974
effective search space used: 2451172974
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -