GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000384-TA|BGIBMGA000384-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
         (318 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.6  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   6.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 206  VHTMQEHEKYKAPLYLKATILEANKAECFWK 236
            +H   E +  +AP+ +KA ++ +      W+
Sbjct: 1171 IHCQTEQDAPEAPIAIKALVMSSESILVSWR 1201


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 84  NAKVGDQEEPKAKTGFLEKTFSSFKATKAEAIAQKSILEKRR 125
           N K G  EE + +T F  +  +  K   AE    + + E+RR
Sbjct: 12  NGKNGSPEEKRPRTAFSAEQLARLKREFAE---NRYLTERRR 50


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 25  WNEDFKFQLKQKEAKKSSDKIDLQNLV 51
           W+ D+  +  +K+  KSS    L+N+V
Sbjct: 200 WDSDYTDKSNEKKIPKSSGWRKLRNIV 226


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.129    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,963
Number of Sequences: 429
Number of extensions: 3050
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 318
length of database: 140,377
effective HSP length: 58
effective length of query: 260
effective length of database: 115,495
effective search space: 30028700
effective search space used: 30028700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)