Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000383-TA|BGIBMGA000383-PA|IPR002085|Alcohol
dehydrogenase superfamily, zinc-containing
         (370 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.66 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.66 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   8.1  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 303 LYLCDYLFPGEAPAEALLSVRELLDLKITETDVICDVETPAGAQIFVFLEIILLN 357
           L  CD    G     AL  ++ L ++ +T   VIC +  P+     +F +++L++
Sbjct: 240 LMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIHQPSSEVYSMFDKLLLMS 294


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 303 LYLCDYLFPGEAPAEALLSVRELLDLKITETDVICDVETPAGAQIFVFLEIILLN 357
           L  CD    G     AL  ++ L ++ +T   VIC +  P+     +F +++L++
Sbjct: 240 LMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIHQPSSEVYSMFDKLLLMS 294


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 30  LGQMTDARENVIHLARTPEEKGSEIGIESNYGLD 63
           L + +D     IH     +E+G  I +  N G+D
Sbjct: 308 LKRWSDRIYAAIHQGSVTDERGRSITLTENEGID 341


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,551
Number of Sequences: 317
Number of extensions: 3637
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 370
length of database: 114,650
effective HSP length: 58
effective length of query: 312
effective length of database: 96,264
effective search space: 30034368
effective search space used: 30034368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)