Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000383-TA|BGIBMGA000383-PA|IPR002085|Alcohol
dehydrogenase superfamily, zinc-containing
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.092
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)                   29   6.1  
SB_58464| Best HMM Match : S1-P1_nuclease (HMM E-Value=6.9)            29   8.0  

>SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 35.1 bits (77), Expect = 0.092
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 37  RENVIHLARTPE--EKGSEIGIESNYGLD-----KSEIAKNLSSVS-EAWIADHARHVTR 88
           R+ +IH ++  E  E G   GI  N G         +I+ +LSS S ++W+ D++  V  
Sbjct: 12  RKRIIHHSKASEGHELGYLFGIYDNEGYSIIRCAACKISSSLSSSSSDSWLVDYS-DVAS 70

Query: 89  MLPGGMFVQGIFVTSDEDVFEDPNCFSKLRSTLN 122
           ++P G+ V G++++S + +  D    +K+ + L+
Sbjct: 71  LIPEGIHVCGVYISSPKHLKLDHPSSTKVLNDLS 104


>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
          Length = 551

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 113 CFSKLRSTLNHIYKGLSINEYMFGNCPYSNERLILHMSTSTKVLTCKSLEVGGLN 167
           CFSK+R+ LNH  K  ++N  + G   Y+   +  ++     +  C+ L  GG N
Sbjct: 220 CFSKMRALLNH--KATNVN--IEGRNKYTPLHIAAYLEHRNALEICQKLLDGGAN 270


>SB_58464| Best HMM Match : S1-P1_nuclease (HMM E-Value=6.9)
          Length = 403

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 293 PRRVLVPVGSLYL--CDYLFPGEAPAEA 318
           PR +  P G LYL  C Y FPGE P ++
Sbjct: 273 PRNIGSPQGFLYLLFCLYYFPGENPLKS 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,501,579
Number of Sequences: 59808
Number of extensions: 512613
Number of successful extensions: 854
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 3
length of query: 370
length of database: 16,821,457
effective HSP length: 83
effective length of query: 287
effective length of database: 11,857,393
effective search space: 3403071791
effective search space used: 3403071791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)