Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000383-TA|BGIBMGA000383-PA|IPR002085|Alcohol
dehydrogenase superfamily, zinc-containing
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28670.1 68416.m03578 expressed protein                             64   1e-10
At5g01440.1 68418.m00057 insulin-degrading enzyme-related contai...    31   1.2  
At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein, p...    30   2.2  
At5g62580.1 68418.m07855 expressed protein                             30   2.8  
At4g12020.1 68417.m01912 protein kinase family protein similar t...    29   3.8  
At1g53165.1 68414.m06023 protein kinase, putative similar to ser...    29   5.0  
At5g40680.1 68418.m04938 kelch repeat-containing F-box family pr...    29   6.6  
At5g18770.1 68418.m02230 F-box family protein contains F-box dom...    29   6.6  
At5g47200.1 68418.m05820 Ras-related GTP-binding protein, putati...    28   8.7  

>At3g28670.1 68416.m03578 expressed protein
          Length = 491

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 19/187 (10%)

Query: 26  IGLILGQMTDAREN--VIHLARTPEEKGSEIG---IESNYGLDKSEIAKNLSSVSEA--- 77
           +GL++G+++   +   V  L  TP     E     +E+     K   +K+ SS S +   
Sbjct: 28  VGLVIGKLSSVLDRGFVFDLIPTPSNDDGEPACAVLETKDDKRKPSKSKSQSSESSSLSI 87

Query: 78  ---WIADHARHVTRMLPGGMFVQGIFVTSDEDVFEDPNCFSKLRSTLNHIYKGLSINEYM 134
              W+A+HAR V+RML GGM V GI+V + +  F++        ST+       ++++ +
Sbjct: 88  DSDWVAEHARQVSRMLLGGMKVVGIYVWASDIAFKN--------STMILCQAMKAVSDAI 139

Query: 135 FGNCPYSNERLILHMSTSTKVLTCKSLEVGGLNKNTTLKPVEWKFSPKALSWQRLDCYYE 194
               P  NE L++H+  S +   C++  +     ++ L+P ++K      S QR  C Y 
Sbjct: 140 RHLDPSLNEALLIHICYSPRRWNCRTCLLSSSITSSNLRPCDFKLGKVLSSLQRFRCSYN 199

Query: 195 FDEIYPV 201
           F    P+
Sbjct: 200 FSFRLPI 206



 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 26/154 (16%)

Query: 214 FQENTLPETVEYLECEGSIHFSGVVSSSVFIYPKATVKEAIAAVKQDMVRSLASRFTMHC 273
           F ++T  E        G + F+G V S  ++  K  V +AIA +K D++RSL SR  + C
Sbjct: 264 FMKDTRAEASTAKNVTGILLFTGSVFSYAYLNVKEPVSQAIADIKADIIRSLQSRLDIIC 323

Query: 274 DAL--------IDDN-------LLPEEKICFNEP--------PRRVLVP-VGSLYLCDYL 309
           D          + DN        +P  K+  N          PRRVLVP +  +++CDYL
Sbjct: 324 DESEQDLNPTDVGDNENADGMSKIPISKLILNSSIKACHLRLPRRVLVPWLSGMFICDYL 383

Query: 310 FPGEAPAEALLSVRELLDLKITETD--VICDVET 341
            P E+         EL+ ++ +  D   I +VET
Sbjct: 384 QPFESLEVVKERCIELMSMEHSSIDESKISEVET 417


>At5g01440.1 68418.m00057 insulin-degrading enzyme-related contains
           weak similarity to Swiss-Prot:P14735 insulin-degrading
           enzyme (Insulysin) (Insulinase) (Insulin protease) [Homo
           sapiens]
          Length = 307

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 197 EIYPVIVKNSGVSVKNQFQENTLPETVEYLECE 229
           EI+P   + + V VKN+F+ N+L +    ++CE
Sbjct: 7   EIFPCAKRKTDVKVKNKFESNSLAKVYFRIKCE 39


>At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein,
           putative (DRT100) similar to
           DNA-damage-repair/toleration protein DRT100 [Precursor]
           SWISS-PROT:Q00874, NCBI_gi:5701788; contains multiple
           LRR repeats Pfam profile: PF00560
          Length = 372

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 166 LNKNTTLKPV-EWKFSPKALSWQRLDCYYEFDEIYPVIVKNSGVSVKNQFQENTLPETV 223
           L+KN    P+ EW  + K LS   LDC      I   ++ NSG+ V N    N L  T+
Sbjct: 238 LSKNHIEGPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDVAN-LSRNALEGTI 295


>At5g62580.1 68418.m07855 expressed protein
          Length = 615

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 42  HLARTPEEKGSEIGIESNYGLDKSEIAKNLSSVSEAWIADHARHVTRMLPGGMFVQ-GIF 100
           HL       GS +   +    ++  I +  +S++ +    + R       GG  +  G+ 
Sbjct: 329 HLVNRSTPPGSSLATTARKQANRKSIDQKKTSLTASLTKPNVRRRLEWKAGGASIPTGVS 388

Query: 101 VTSDEDVFEDPNCFSKLRSTLNHIYKGLSINEYMFGNCPYSNERLIL-H--MSTSTKVLT 157
           +  ++    D N      S+ N + K   ++  + GN P S   ++  H  +S +     
Sbjct: 389 LEDEQHCDHDENAKETSHSSHNTVQKLGGVSSSLNGNIPPSGATMVTGHHVLSENPNSNN 448

Query: 158 CKSLEVGGLNKN 169
           CK LE   L +N
Sbjct: 449 CKGLEDISLIRN 460


>At4g12020.1 68417.m01912 protein kinase family protein similar to
            mitogen-activated protein kinase [Arabidopsis thaliana]
            GI:1255448; contains Pfam profiles PF02671: Paired
            amphipathic helix repeat, PF03106: WRKY DNA-binding
            domain, PF00560: Leucine Rich Repeat, PF00069: Protein
            kinase domain, PF00931: NB-ARC domain
          Length = 1798

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 64   KSEIAKNLSSVSEAWIADHARHVTRMLPGGMFVQGIFVTSDEDVFE-DPNCFSKL 117
            + E A      S  W AD+ RHV     G   ++GIF+      F+ +PN F K+
Sbjct: 1121 RQESADRPGDRSRLWNADYIRHVFINDTGTSAIEGIFLDMLNLKFDANPNVFEKM 1175


>At1g53165.1 68414.m06023 protein kinase, putative similar to
           serine/threonine protein kinase 24 [Homo sapiens]
           SWISS-PROT:Q9Y6E0
          Length = 1007

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 219 LPETVEYLECEGSIHFSGVVSSSVFIYPKATVKEAIAAVKQDMVRSLASRFT 270
           L   VEYL  EG IH   + ++++ +     VK A   V   + R+++ R T
Sbjct: 447 LLHAVEYLHAEGKIH-RDIKAANILLSENGDVKVADFGVSAQLTRTISRRKT 497


>At5g40680.1 68418.m04938 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif
          Length = 415

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 54  IGIESNYGLDKSEIAKNLSSVSEAWIADHARHVTRMLPGGMFVQGIF 100
           I    N G D   +A+  +S ++ W A  A H  R    G F++G F
Sbjct: 215 IKTSENGGPDVVNVAERYNSDTKTWKAMKAMHKRRKFSSGCFLRGKF 261


>At5g18770.1 68418.m02230 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 481

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 303 LYLCDYLFPGEAPAEALLSVRELL-DLKIT 331
           +YL D +FP +A AE L+S   +L DLK++
Sbjct: 181 MYLEDVVFPSDAAAETLISCSPVLEDLKLS 210


>At5g47200.1 68418.m05820 Ras-related GTP-binding protein, putative
           similar to GTP-binding protein GI:303750 from [Pisum
           sativum]
          Length = 202

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 12  LQYLEQYASKEIFAIGLILGQMTDARENVIHLARTPEEKGSEIGIESNYGLDKSEIAKNL 71
           L  +++YAS+ +    L++G   D     +    T +    E+GI     L+ S  AKN 
Sbjct: 103 LNEIDRYASENVNK--LLVGNKNDLTSQKVVSTETAKAFADELGIPF---LETS--AKNA 155

Query: 72  SSVSEAWIADHARHVTRM 89
           ++V EA++A  A   TRM
Sbjct: 156 TNVEEAFMAMTAAIKTRM 173


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,991,229
Number of Sequences: 28952
Number of extensions: 381110
Number of successful extensions: 817
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 12
length of query: 370
length of database: 12,070,560
effective HSP length: 82
effective length of query: 288
effective length of database: 9,696,496
effective search space: 2792590848
effective search space used: 2792590848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)