Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000383-TA|BGIBMGA000383-PA|IPR002085|Alcohol
dehydrogenase superfamily, zinc-containing
(370 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0143 + 5795028-5795108,5795197-5795403,5795878-5795976,579... 90 2e-18
08_01_0009 + 68825-68950,72571-72669,72841-72929,74971-75087,757... 81 2e-15
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 30 2.6
07_01_0019 + 124594-126477 29 4.5
03_06_0516 - 34461975-34463456 29 4.5
04_01_0188 - 2208001-2208576,2211502-2211513,2212837-2212970,221... 29 6.0
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323... 29 7.9
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701... 29 7.9
>10_02_0143 +
5795028-5795108,5795197-5795403,5795878-5795976,
5796136-5796224,5797876-5797992,5798262-5798367,
5798522-5798606,5798699-5798808,5799335-5799465,
5799686-5799782,5800310-5800603
Length = 471
Score = 90.2 bits (214), Expect = 2e-18
Identities = 110/424 (25%), Positives = 196/424 (46%), Gaps = 81/424 (19%)
Query: 1 MPRTVYSPEHCLQYLEQY--ASKEIFAIGLILGQMTDARENVI--HLARTPEEKGSEIGI 56
M +TV E L+ LE+ AS +GL++G+++ + + + L TP
Sbjct: 1 MVKTVVGEEAQLKALEETLSASASPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC 60
Query: 57 ESNYGLDKSEIAKNLSSVSEA-------WIADHARHVTRMLPGGMFVQGIFVTSDEDVFE 109
+ AK SS + + W+A+HAR V+RML GGM V GI++ + E F+
Sbjct: 61 SLLRAAPNPKAAKAASSDASSSLDFDVDWVAEHARQVSRMLLGGMTVIGIYIWASEASFK 120
Query: 110 DPNCFSKLRSTLNHIYKGLSINEYMFGNCPYSNERLILHMSTSTKVLTCKSLEVGGLNKN 169
+ + L+ + + +S ++G +ERL++H+S S + C+ ++ +
Sbjct: 121 -----ATSPAVLSQVLRAVSQVAPLYGT--GVDERLLIHISYSPRRWACRICDM----SS 169
Query: 170 TTLKPVEWKFSPKALSWQRLDCYYEFDEIYPVI-------VKNSGVS-VKNQFQ------ 215
L+P ++K++ S Q C Y F+ PV+ V + +S + Q Q
Sbjct: 170 GRLRPCDFKYTKLLASLQTFRCTYNFEIRLPVVQAEPFKKVISKAISHLTKQVQNAKALI 229
Query: 216 ---------ENTL--PETVEYL----------ECE-----GSIHFSGVVSSSVFIYPKAT 249
+NTL P VE+L EC G + F+G VS+ ++ PK +
Sbjct: 230 DGVLFLDDMDNTLEGPHNVEFLVPFKNNLPAEECSLEGVAGLLLFAGSVSALAYLGPKES 289
Query: 250 VKEAIAAVKQDMVRSLASRFTMHCDALIDD-------NLLPEE--KICFNE---P----- 292
+ E I+ +K D++ SL SR + D DD N L ++ ++ F+E P
Sbjct: 290 IAEVISDLKLDIITSLRSRLDIILDEADDDSTTNNLENSLSQKATQVVFHELRVPYSFPF 349
Query: 293 PRRVLVP-VGSLYLCDYLFPGEAPAEALLSVRELLDLKITETDV-ICDVETPAGAQIFVF 350
PRR+L+P + Y+CDYL E +A+ +E++ L+ + I + E+ + A + F
Sbjct: 350 PRRILIPWLAGSYICDYLQQSETTEDAMERCKEVMSLEADMGNYSIVEPESASAATLGSF 409
Query: 351 LEII 354
+++
Sbjct: 410 WDVV 413
>08_01_0009 +
68825-68950,72571-72669,72841-72929,74971-75087,
75747-75906,76419-76549,76810-76906,77584-77877
Length = 370
Score = 80.6 bits (190), Expect = 2e-15
Identities = 76/288 (26%), Positives = 143/288 (49%), Gaps = 37/288 (12%)
Query: 86 VTRMLPGGMFVQGIFVTSDEDVFEDPNCFSKLRSTLNHIYKGLSINEYMFGNCPYSNERL 145
V+RML GGM V GI++ + E F+ + + L+ + + +S ++G +ERL
Sbjct: 43 VSRMLLGGMTVIGIYIWASEASFKATS-----PAVLSQVLRAVSQVAPLYGTGV--DERL 95
Query: 146 ILHMSTSTKVLTCKSLEVGGLNKNTTLKPVEWKFSPKALSWQRLDCYYEFDEIYPVIVKN 205
++H+S S + C+ ++ + L+P ++K+S S Q C Y F+ + + +
Sbjct: 96 LIHISYSPRRWACRICDMS----SGRLRPCDFKYSKLLASLQTFRCTYNFEISFSLC--H 149
Query: 206 SGVSVKNQFQENTLPETVEYLECEGSIHFSGVVSSSVFIYPKATVKEAIAAVKQDMVRSL 265
G + N + E V G + F+G VS+ ++ PK ++ E I+ +K D++ SL
Sbjct: 150 YGSLMVNACTKECSLEGVA-----GLLLFAGSVSALAYLGPKESIAEVISDLKLDIITSL 204
Query: 266 ASRFTMHCDALIDD-------NLLPEE--KICFNE-------P-PRRVLVP-VGSLYLCD 307
SR + D DD N L ++ ++ F+E P PRR+L+P + Y+CD
Sbjct: 205 RSRLDIILDEADDDSTTNNLENSLSQKATQVVFHELRAPYSFPFPRRILIPWLAGSYICD 264
Query: 308 YLFPGEAPAEALLSVRELLDLKITETDV-ICDVETPAGAQIFVFLEII 354
YL E +A+ +E++ L+ + I + E+ + A + F +++
Sbjct: 265 YLQQSETMEDAMERCKEVMSLEADMGNYSIVEPESASAATLGSFWDVV 312
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 30.3 bits (65), Expect = 2.6
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 150 STSTKVLTCKSLEVGGLNKNTTLKPVEWKFSPKALSWQR 188
S S VL +GGLN+NTT VE F +A SW+R
Sbjct: 596 SHSVVVLGDSLHALGGLNRNTTFSSVE-IFDTRANSWRR 633
>07_01_0019 + 124594-126477
Length = 627
Score = 29.5 bits (63), Expect = 4.5
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 46 TPEEKGSEIGIESNYGLDKSEIAKNLSSVSEAWIADHARHVTRMLPGGMFVQGIFVTSDE 105
TP E SE+G + G +A +S A I + R + R + G+ +F+ +
Sbjct: 522 TPAESFSEMGTMAASGRQLMAVAVKMSLEEMARIEEEQRFIQREMEKGV----VFILGES 577
Query: 106 DVFEDPNCFSKLRSTLNHIYKGLSIN 131
+V P+ + +N+ Y L N
Sbjct: 578 EVVARPHSSLLKKLVVNYAYSFLRRN 603
>03_06_0516 - 34461975-34463456
Length = 493
Score = 29.5 bits (63), Expect = 4.5
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 61 GLDKSEIAKNLSS--VSEAWIADHA--RHVTRMLPGGMFVQGIFVTSDEDVFEDPNCFSK 116
GLD + ++L+ VS +A HA HVTR+L G + ++ DP F +
Sbjct: 282 GLDLAAATRSLTKIPVSSPQLAKHALEAHVTRVLLVGFEHESFYLDGSLSSLLDPAAFRR 341
Query: 117 LRSTLNHIYKGLSINEY--MFGNCPY 140
R T +G+ E + CP+
Sbjct: 342 ERYTQFRDMRGMEPAELLGLLPTCPF 367
>04_01_0188 -
2208001-2208576,2211502-2211513,2212837-2212970,
2213147-2213262,2214844-2215075,2218483-2218548,
2219661-2219750,2221340-2221388
Length = 424
Score = 29.1 bits (62), Expect = 6.0
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 266 ASRFTMHCDALIDDNLLPEEKICFNEPPRRVL-VPVGSLYLCDYLFPGEAPAEALLSVRE 324
A+RF +HCD+ + ++P K + P+ P+GS+ + + F G P + +
Sbjct: 208 ANRFYIHCDSALVGLMMPFIKQVNPKAPKLTFKKPIGSICISGHKFIG-CPIPCGVLITR 266
Query: 325 LLDL 328
L+D+
Sbjct: 267 LMDI 270
>09_04_0683 -
19431034-19431495,19431632-19431997,19432055-19432326,
19433621-19433686,19433924-19433978,19434509-19434577,
19435200-19435307,19435394-19435462,19435883-19436038,
19436089-19436229,19436514-19436568,19437103-19437233,
19437382-19437486
Length = 684
Score = 28.7 bits (61), Expect = 7.9
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 238 VSSSVFIYPKATVKEAIAAVKQDMVRSLASRFTMHCDALI 277
+ ++V YP VK + A KQ++ R++ SR+T DA+I
Sbjct: 265 LGATVVTYPLLVVKSRLQA-KQEIGRNVMSRYTGTIDAII 303
>02_02_0123 +
7015905-7015928,7015975-7016105,7017675-7017940,
7018239-7018327,7018716-7018811,7018874-7018969,
7019121-7019251,7020123-7020177,7020645-7020800,
7021238-7021306,7021392-7021499,7022128-7022196,
7022743-7022797,7023031-7023227
Length = 513
Score = 28.7 bits (61), Expect = 7.9
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 238 VSSSVFIYPKATVKEAIAAVKQDMVRSLASRFTMHCDALI 277
+ ++V YP VK + A KQ++ R++ SR+T DA+I
Sbjct: 417 LGATVVTYPLLVVKSRLQA-KQEIGRNVMSRYTGTIDAII 455
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,754,550
Number of Sequences: 37544
Number of extensions: 444710
Number of successful extensions: 874
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 11
length of query: 370
length of database: 14,793,348
effective HSP length: 83
effective length of query: 287
effective length of database: 11,677,196
effective search space: 3351355252
effective search space used: 3351355252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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