GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000383-TA|BGIBMGA000383-PA|IPR002085|Alcohol
dehydrogenase superfamily, zinc-containing
         (370 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   9.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   9.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 18/66 (27%), Positives = 29/66 (43%)

Query: 152 STKVLTCKSLEVGGLNKNTTLKPVEWKFSPKALSWQRLDCYYEFDEIYPVIVKNSGVSVK 211
           S+  L   S ++    +N TLK V+ K    ALS    + YY       +   N+   +K
Sbjct: 225 SSHTLNHNSDKMSDQQENLTLKEVDNKVYGMALSPVTHNLYYNSPSSENLYYVNTESLMK 284

Query: 212 NQFQEN 217
           ++ Q N
Sbjct: 285 SENQGN 290


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)

Query: 202 IVKNSGVSVKNQFQENTLPETVEYLE 227
           +VK+S ++V+ Q QEN +   V+ ++
Sbjct: 324 VVKSSELAVRIQRQENNIRPMVKQID 349


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,653
Number of Sequences: 429
Number of extensions: 4253
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 370
length of database: 140,377
effective HSP length: 59
effective length of query: 311
effective length of database: 115,066
effective search space: 35785526
effective search space used: 35785526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)