Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000382-TA|BGIBMGA000382-PA|IPR007052|CS,
IPR008978|HSP20-like chaperone
         (156 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...   123   1e-29
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    30   0.14 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   0.56 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   2.3  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   4.0  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    25   5.2  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    25   5.2  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    25   6.9  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   9.1  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    24   9.1  
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    24   9.1  

>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score =  123 bits (296), Expect = 1e-29
 Identities = 63/155 (40%), Positives = 97/155 (62%), Gaps = 9/155 (5%)

Query: 2   SLLNLGLQIRVPLRQILRPRDLTVVINKKHLKVGIK--GQPLIIDGELDADVKIEESTWV 59
           ++ ++ + I VP  +  R + L V ++   LK+ I    + +++ G L+  + ++ESTW 
Sbjct: 16  TIADVDIVIHVP--KGTRAKSLQVDMSNHDLKIQINVPERKVLLSGPLEKQINLDESTWT 73

Query: 60  LQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDQ 119
           +++   L+I+LEK NKM WW  ++   P I    I PE SKLSDLD ETR  VEKMM +Q
Sbjct: 74  VEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQ 133

Query: 120 RQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFSKCK 154
            QK      +DEQK+++VL+ FM+QHPE+DFS  +
Sbjct: 134 SQKR-----TDEQKRKDVLQNFMKQHPELDFSNVR 163


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 80  GRLVTTDP--EISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQEV 137
           GR+++ +   EI+ R ++P  S+LS+   + R   E+    +R K++       +KK+E 
Sbjct: 682 GRVISPEELEEIARRNVDPMVSELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEK 741

Query: 138 LKKFMEQHPEMDFSK 152
            +K  E+  + + +K
Sbjct: 742 ARKAEEKRLQKERAK 756


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 0.56
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 79   WGRLVTTDPEISTRKINPEPSKLSDLDGETRGLVE--KMMYDQRQKEMGLPTSDEQKKQE 136
            W     T+P +    +  EP+++++   +     E  K     R +   +P  +EQKK  
Sbjct: 938  WANKPVTEPPVRASSVTVEPARVTESMNKMNISEEAKKPEAPSRPRTAPIPEPEEQKKAP 997

Query: 137  VLKKFMEQ 144
            V KK  E+
Sbjct: 998  VEKKDAEK 1005


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 27   INKKHLKVGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGRLVTTD 86
            I  KH +   +   L ID E  AD+ I    W LQ G +L+ ++      N+  ++V   
Sbjct: 1416 IKAKHKRSAQEWANLNIDPE--ADLLIFVGRWTLQKGIDLIADITPTLLENFNSQIVVVG 1473

Query: 87   PEI 89
            P I
Sbjct: 1474 PVI 1476


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 82  LVTTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKK-QEVLKK 140
           LV+   E S+++++    +   L      +++KM YD+ Q+    P S+E+ + QE+ KK
Sbjct: 358 LVSLRKESSSKELSASLKEF--LKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKK 415


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 36  IKGQPLIIDGELDADVKIEESTWV 59
           I+ QP   DGE+D +VK EE   V
Sbjct: 290 IETQPASHDGEVDGEVKEEEENKV 313


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 101 LSDLDGETRGLVEKMMYDQRQK--EMGLPTSDEQKKQEVLKK 140
           L +L   +R +V K     ++K  E  LP+  +QKK EV K+
Sbjct: 257 LKELIASSRKVVTKETASSKRKSDEESLPSQKKQKKVEVAKE 298


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 119 QRQKEMGLPTSDEQ-KKQEVLKKFMEQHP 146
           QR K  G+P  DEQ KK     +F  Q P
Sbjct: 151 QRAKRFGIPVDDEQIKKAARAARFGIQQP 179


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 689

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 1  MSLLNLGLQIRVPLRQILRPRDLTVVINKKH 31
          M+LL+  L+ R P++ I+   D  +  N KH
Sbjct: 1  MNLLSHQLRDRFPIKAIISKADEVIFANYKH 31


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 107 ETRGLVEKMMYDQRQKEMGLPTSDEQKKQEV--LKKFMEQHPEMDFSKC 153
           E + +V+   YD   K +GLP SD   K  +  L + +E + E+D   C
Sbjct: 385 EYKNIVQNDFYDLMFKRVGLP-SDSSNKILITDLLQILEDY-ELDMPNC 431


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 51  VKIEESTWVLQDGRNLLINLEKVNKMNWWG----RLVTTDPEISTRKINPEPSKLSDLDG 106
           V++ +  W +QDG N ++ +  +     +G     +V   P+I   K      +L  L G
Sbjct: 169 VQLNKGDWFIQDGANSMVGIATIQLAKHFGYKSINVVRNRPDIEKLK-----EQLKSL-G 222

Query: 107 ETRGLVEKMMYDQRQKEMGLP 127
            T  + ++ + D++  +  +P
Sbjct: 223 ATIVITDEELMDRKTMKQKVP 243


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,502
Number of Sequences: 5004
Number of extensions: 29427
Number of successful extensions: 89
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 12
length of query: 156
length of database: 2,362,478
effective HSP length: 67
effective length of query: 89
effective length of database: 2,027,210
effective search space: 180421690
effective search space used: 180421690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)