Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000382-TA|BGIBMGA000382-PA|IPR007052|CS,
IPR008978|HSP20-like chaperone
         (156 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)      83   1e-16
SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_40414| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   7e-04
SB_26685| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.009
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          32   0.25 
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        31   0.33 
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               29   1.8  
SB_46510| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 28   3.1  
SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_53348| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)                  28   4.0  
SB_3915| Best HMM Match : IF2_N (HMM E-Value=4)                        27   5.3  
SB_17934| Best HMM Match : PX (HMM E-Value=2e-19)                      27   7.1  
SB_5245| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_51365| Best HMM Match : ig (HMM E-Value=0.00037)                    27   9.3  
SB_20713| Best HMM Match : Pkinase (HMM E-Value=0)                     27   9.3  

>SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)
          Length = 376

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 13/136 (9%)

Query: 8   LQIRVPLRQ-ILRPRDLTVVINKKHLKVGIKGQ----------PLIIDGELDADVKIEES 56
           + I+VP+   + + RD+ V I    LKV +KG            +++DG+L   VK EE 
Sbjct: 98  IDIKVPVPSCVKKARDVGVEIKNSSLKVFLKGSVPPDDLKKGSTILVDGQLQRHVKCEEC 157

Query: 57  TWVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRKINPEPSKLSDLDGETRGLVEKMM 116
            W L+ G+ + INLEK  +  +W  ++  DPEI   KI+     + D D +T+   E++M
Sbjct: 158 MWSLEPGKCVAINLEKTEE-RFWTTVIKGDPEIDRTKID-TTRDIHDFDEQTQTDYEQVM 215

Query: 117 YDQRQKEMGLPTSDEQ 132
           YD RQK+MG PT  EQ
Sbjct: 216 YDYRQKQMGKPTVKEQ 231


>SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 22  DLTVVINKKHLKVGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEKVNKMNWWGR 81
           D+   I   H++V +  +  ++ G+L A VK ++STW + D  +L I L+KV   + W  
Sbjct: 269 DIQCTIKPAHIEVKLSSEKKLLQGKLYAKVKPDDSTWTVVD-NSLEIVLDKVVPEHHWST 327

Query: 82  LVTTD 86
           +V +D
Sbjct: 328 VVESD 332


>SB_40414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 18/28 (64%), Positives = 22/28 (78%)

Query: 121 QKEMGLPTSDEQKKQEVLKKFMEQHPEM 148
           Q++MGLPTSDEQKKQ+VLKK     P +
Sbjct: 190 QQKMGLPTSDEQKKQDVLKKTNTAKPNV 217


>SB_26685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 17/25 (68%), Positives = 19/25 (76%)

Query: 124 MGLPTSDEQKKQEVLKKFMEQHPEM 148
           MGLPTSDEQKKQ+VLKK     P +
Sbjct: 1   MGLPTSDEQKKQDVLKKTNTAKPNV 25


>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 26  VINK---KHLKVGIKGQPLIIDGELDADVKIEESTWVLQDGRNLLINLEK 72
           +INK   KH  +G+KG P IIDG+  A V  +E  W       L + L+K
Sbjct: 288 IINKLTAKHWTLGVKGSPPIIDGDFYAPVLPDECIWTFDGPGVLQMTLQK 337


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 88  EISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQK--EMGLPTSDEQKKQEVLKKFMEQH 145
           E S    + E S L+D +G+ R + E++  D+R +    G+   DE KK+   KK M+++
Sbjct: 526 ENSVVTASEEISLLTDSEGDQRVVTEELRSDKRIRVNVQGMGEGDESKKERGEKKEMKEN 585

Query: 146 PEMDFSK 152
             +  +K
Sbjct: 586 VALHLTK 592


>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 58   WVLQDGRNLLINLEKVNKMNWWGRLVTTDPEISTRKINPEPSKLSDLDGETRG-----LV 112
            W + D   LL+ +      +W      T   +ST+ + P   K  D   +TR      L+
Sbjct: 954  WDVSDDSMLLVGIYNYGMGSWEAIKADTKLGLSTKILPPGNLKPQDKHLQTRAEYLIKLL 1013

Query: 113  EKMMYDQRQKEMGLPTSDEQKKQEVLKKFMEQHPEMDFS 151
            +++++D R +E+   +   + K   LKK +++ P  + S
Sbjct: 1014 KQVVHDNRAEELRKSSLKIKTKIRKLKKDLKKKPSSEVS 1052


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 38   GQPLIIDGELDADVKIEESTWVLQDGRNLLIN----LEKVNKMN 77
            G PL +DG    D K++E    ++ G+N+ IN    LE ++++N
Sbjct: 3437 GPPLEVDGIDKLDGKVQEKNTAVESGQNIAINFAEGLEPIHELN 3480


>SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1328

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 89  ISTRKINPEPSKLSDLDGETRGLVEKMMYD--QRQKEMGLPTSDEQKKQEVLKKFMEQHP 146
           +S  K+N    K   L   TRG  +K M+   + QKE+ L    E KKQ  L +  E+  
Sbjct: 516 LSVMKLNERRRKEKGLVNPTRGEQDKTMFGRWKLQKEVLLRDEIEWKKQCPLVELFERRR 575

Query: 147 EMDFSKCK 154
            +D  K K
Sbjct: 576 YLDAIKEK 583


>SB_46510| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 157

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 88  EISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQEVLKKFMEQHPE 147
           E  TR+   EP+K  +     RGL E+    +R +++ L      +K++   ++  +  +
Sbjct: 2   EEETRR-GEEPNKKEERSRRPRGLTEEQRARKRARDLVLTEEQRMRKRQTSSEYRVRKGQ 60

Query: 148 MDFSKCKFN 156
            D S+C+ +
Sbjct: 61  KD-SECELD 68


>SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 70  LEKVNKMNWWGRLVTTDPEISTRKINPEPSK 100
           +EKV K  W  R  T  P  +T +++ EPSK
Sbjct: 100 IEKVGKETWLPRSHTWTPLSATPQVDQEPSK 130


>SB_53348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 87  PEISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQEVLKKFME 143
           P IS ++ N  P  ++ L   T   +E++MY +R   + LP  +   ++++L+   E
Sbjct: 31  PRISLQE-NEIPCNIAQLPRFTNCAIERLMYVERTINVNLPKINSIARKKILRAGFE 86


>SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 601

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 100 KLSDLDGETRGLVEKMMYD------QRQKEMGLPTSDEQKKQEVLKKFME-QHPEMDFSK 152
           KL D+D E    +EKM  D      +R + +   T   +K  E+L+K  E ++ + +++K
Sbjct: 29  KLQDIDDEYEQRIEKMKADHAKALRERSQVIEYQTDSTRKATEILEKSKELEYLDKEYTK 88

Query: 153 CKF 155
            K+
Sbjct: 89  QKY 91


>SB_3915| Best HMM Match : IF2_N (HMM E-Value=4)
          Length = 220

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 111 LVEKMMYDQRQKEMGLPTSDEQKKQ-EVLKKFMEQHPEM 148
           L  +   D+ +KE  L  S+E+KK+ E LK+ +E+  E+
Sbjct: 50  LCNQFSADKGKKEASLEVSEEKKKEKEALKRELEKEVEL 88


>SB_17934| Best HMM Match : PX (HMM E-Value=2e-19)
          Length = 586

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 108 TRGLVEKMMYDQRQKEMGLPTSDEQKKQEVLKKFMEQ 144
           T  +V+ +   QR++   LP SDE+ K  +L KFM Q
Sbjct: 280 TPDVVKAVNISQRRRGKHLP-SDEKGKVSILDKFMRQ 315


>SB_5245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 5   NLGLQIRVPLRQILRPRDLTVVINKKHLKVGIKGQPLIIDGELDAD 50
           +LG ++ VP RQ ++      V+N   L     G PL+I G  DA+
Sbjct: 182 HLGGKVLVPTRQFIK------VLNAARLAADTMGVPLVIVGRTDAN 221


>SB_51365| Best HMM Match : ig (HMM E-Value=0.00037)
          Length = 498

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 44 DGELDADVKIEESTWVLQDGRNLLINLEKVNKMN 77
          D EL   +K     W+  DG NL + L  + K N
Sbjct: 46 DLELKCALKETRFRWLYNDGNNLTVKLALIEKAN 79


>SB_20713| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 492

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 14  LRQILRPRDLTVVINKKHLKVGIKGQPLIIDGELDADVKIEESTWVL-QDGRNLLINLEK 72
           L + ++P +L V      LK+G  GQ  ++D E D D  +  S   L      L +N   
Sbjct: 145 LHRDIKPSNLLVDSETLMLKIGDFGQTRVVDPEFDHDGYLTHSPSTLWYKAPELFLNSTG 204

Query: 73  V-NKMNWWG 80
             N ++ WG
Sbjct: 205 YSNAIDIWG 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,130,461
Number of Sequences: 59808
Number of extensions: 200531
Number of successful extensions: 608
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 20
length of query: 156
length of database: 16,821,457
effective HSP length: 76
effective length of query: 80
effective length of database: 12,276,049
effective search space: 982083920
effective search space used: 982083920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)