Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000382-TA|BGIBMGA000382-PA|IPR007052|CS,
IPR008978|HSP20-like chaperone
         (156 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.15 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   5.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.15
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 8   LQIRVPLRQILRPRDLTVVINKKHLKVGIKGQ 39
           LQ++VP R I+ P D++V  N KH+ +  + Q
Sbjct: 704 LQVKVPPRWIVEPTDVSVERN-KHVALHCQAQ 734


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 8   LQIRVPLRQILRPRDLTVVINKKHLKVGIKGQ 39
           L + VP R I+ P D++V  N KH+ +  + Q
Sbjct: 700 LVVHVPPRWIVEPTDVSVERN-KHVALHCQAQ 730


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 80  GRLVTTDPEISTRKINPEPSKLSDLDGETR 109
           GRLV T+P  S R   P    ++ L  E++
Sbjct: 198 GRLVITEPVGSVRPKFPSMDNINGLSTESK 227


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 16  QILRPRDLTVVINKKHLKVG 35
           ++ R R LT  +N+ HL  G
Sbjct: 247 KLRRSRMLTATVNRNHLSGG 266


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 42  IIDGELDADVKIEESTWVLQDGRNLL 67
           +  G      +I+E+T V +DG N++
Sbjct: 216 VATGTASEITQIQEATLVYKDGTNVM 241


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,126
Number of Sequences: 429
Number of extensions: 1525
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 156
length of database: 140,377
effective HSP length: 53
effective length of query: 103
effective length of database: 117,640
effective search space: 12116920
effective search space used: 12116920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)