GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000380-TA|BGIBMGA000380-PA|IPR000408|Regulator of
chromosome condensation, RCC1
         (163 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)                      27   5.7  
SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)                      27   5.7  

>SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)
          Length = 1702

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 39  SVKSRMSYGSVEIERSFAAGI---RHGATLVSEKRSFEF 74
           ++KS M+YGS+    SF   +    +GA LVSE +S  F
Sbjct: 745 TLKSNMTYGSIPGNSSFYYNVIKCTNGAKLVSESKSNGF 783


>SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)
          Length = 1865

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 39   SVKSRMSYGSVEIERSFAAGI---RHGATLVSEKRSFEF 74
            ++KS M+YGS+    SF   +    +GA LVSE +S  F
Sbjct: 1432 TLKSNMTYGSIPGNSSFYYNVIKCTNGAKLVSESKSNGF 1470


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.138    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,417
Number of Sequences: 59808
Number of extensions: 65263
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 2
length of query: 163
length of database: 16,821,457
effective HSP length: 77
effective length of query: 86
effective length of database: 12,216,241
effective search space: 1050596726
effective search space used: 1050596726
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)