BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000379-TA|BGIBMGA000379-PA|IPR013090|Phospholipase A2, active site, IPR003006|Immunoglobulin/major histocompatibility complex, IPR001849|Pleckstrin-like, IPR003116|Raf-like Ras-binding, IPR001478|PDZ/DHR/GLGF, IPR000219|DH (1598 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 48 4e-05 At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 44 6e-04 At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 44 8e-04 At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 44 8e-04 At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 42 0.003 At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 42 0.004 At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 42 0.004 At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 40 0.018 At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 38 0.041 At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.096 At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 37 0.096 At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 37 0.096 At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 36 0.17 At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 36 0.17 At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 36 0.22 At4g36980.1 68417.m05240 expressed protein 36 0.29 At5g24880.1 68418.m02946 expressed protein ; expression supporte... 35 0.39 At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 35 0.39 At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.51 At1g74160.1 68414.m08589 expressed protein 34 0.67 At5g27870.1 68418.m03343 pectinesterase family protein similar t... 34 0.89 At4g37100.1 68417.m05255 hypothetical protein 34 0.89 At3g02890.1 68416.m00284 PHD finger protein-related contains low... 34 0.89 At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 34 0.89 At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 34 0.89 At5g22450.1 68418.m02618 expressed protein 33 1.2 At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 33 1.2 At3g25840.1 68416.m03219 protein kinase family protein contains ... 33 1.2 At5g48610.1 68418.m06012 expressed protein ; expression supporte... 33 1.6 At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 33 1.6 At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 33 2.1 At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 33 2.1 At4g09270.1 68417.m01535 hypothetical protein same aa sequence a... 32 2.7 At4g09220.1 68417.m01528 hypothetical protein 32 2.7 At1g24150.1 68414.m03047 formin homology 2 domain-containing pro... 32 2.7 At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 31 4.8 At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 31 4.8 At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 31 4.8 At3g57300.1 68416.m06378 transcriptional activator, putative sim... 31 4.8 At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 31 4.8 At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 31 6.3 At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 31 6.3 At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 31 6.3 At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 31 6.3 At3g25500.1 68416.m03171 formin homology 2 domain-containing pro... 31 6.3 At3g14880.1 68416.m01881 DNA-binding protein-related low similar... 31 6.3 At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 31 6.3 At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 31 6.3 At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4) cont... 31 6.3 At5g60150.1 68418.m07540 expressed protein ; expression supporte... 31 8.3 At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 31 8.3 At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing pr... 31 8.3 At3g01690.1 68416.m00101 expressed protein 31 8.3 At2g22795.1 68415.m02704 expressed protein 31 8.3 >At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 300 Score = 48.4 bits (110), Expect = 4e-05 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 10/103 (9%) Query: 1405 SSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGS 1464 SS +R RSP+RS R S R R S ++++L RS D S+SPR S Sbjct: 200 SSRSRSRSPSRSRSR-SRSRSR-------SRGRGRSHSRSRSLSRSKSPRKDLSKSPRRS 251 Query: 1465 IDKS--KSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKK 1505 + +S KS S D +SP ++ +S+ S RSRSP +P K Sbjct: 252 LSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPK 294 Score = 46.8 bits (106), Expect = 1e-04 Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 11/108 (10%) Query: 1426 RVTKVIVCKSPNKS-SLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGS 1484 RV K +S ++S S ++++ RS +S S S+ +SKSP++ D S+SPR S Sbjct: 194 RVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRK--DLSKSPRRS 251 Query: 1485 IMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSKS 1532 + +S + +SRSP P KK +P + RS +S SR SKS Sbjct: 252 LSRS----ISKSRSPSPDKKK----SPPRAMSRSKSRSRSRSRSPSKS 291 Score = 45.6 bits (103), Expect = 3e-04 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 1442 KQTKTLHRSP--RGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSP 1499 K T R+P RG F + + S +S+SP +S SRS S + R +S RS S Sbjct: 178 KLDDTEFRNPWARG-FIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSR 236 Query: 1500 KPAPKKGIMRTPQASFDRSPCKSPGASRRSSKSGGEKLARLGTNSLDRA 1548 +P+K + ++P+ S RS KS S KS ++R + S R+ Sbjct: 237 SKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRS 285 >At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein weak similarity to CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam profile PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type Length = 837 Score = 44.4 bits (100), Expect = 6e-04 Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 15/133 (11%) Query: 1411 RSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTK-TLHRSP----RGSFDQS--RSPRG 1463 RSP RS R S R + + +SP++S ++ ++ +L RSP R S +S R R Sbjct: 499 RSPVRSASRGSLGRGPLRRSSR-RSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRR 557 Query: 1464 SIDKS--KSPQQSFDGS--RSPRGSIMKSRENSVDR--SRSPKPAPKKGIMRTPQASFDR 1517 S+ +S +SP++S S RS R S+ +S S R SRSP + +K + R+P R Sbjct: 558 SLSRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSVSRSPIRLSRR 617 Query: 1518 SPCKSP-GASRRS 1529 S +SP SRRS Sbjct: 618 SISRSPIRLSRRS 630 Score = 44.0 bits (99), Expect = 8e-04 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 13/141 (9%) Query: 1399 IRSCSGSSINRDRSPNRSLDRASPDRD--RVTKVIVCKSPNKSSLKQ-TKTLHRSPRGSF 1455 +RS S S+ R P R R SP R R ++ + +SP + S + +++ R R S Sbjct: 502 VRSASRGSLGR--GPLRRSSRRSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSL 559 Query: 1456 DQS--RSPRGSIDKS--KSPQQSFDGS--RSPRGSIMKS--RENSVDRSRSPKPAPKKGI 1507 +S RSPR S+ +S +S ++S S RS R I +S R + SRSP ++ I Sbjct: 560 SRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSVSRSPIRLSRRSI 619 Query: 1508 MRTPQASFDRSPCKSPGASRR 1528 R+P RS +SP RR Sbjct: 620 SRSPIRLSRRSISRSPVRGRR 640 Score = 43.6 bits (98), Expect = 0.001 Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 15/149 (10%) Query: 1411 RSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTK---TLHRSPRGSFDQS--RSPRGSI 1465 RSP R + R SP R R+ + +SP +S+ + + L RS R S +S RS R S+ Sbjct: 478 RSPKRVISR-SPVRGRIARS-PSRSPVRSASRGSLGRGPLRRSSRRSPSRSPVRSSRRSL 535 Query: 1466 DKSKSPQQSFDGSRSP----RGSIMKSRENSVDRS--RSPKPAPKKGIMRTPQASFDRSP 1519 +S SRSP R S+ +S S +S RSP + +K + R+P S R Sbjct: 536 SRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRI 595 Query: 1520 CKSPGASRRSSKSGGEKLARLGTNSLDRA 1548 +SP R S KS RL S+ R+ Sbjct: 596 SRSP--VRSSRKSVSRSPIRLSRRSISRS 622 Score = 40.7 bits (91), Expect = 0.008 Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 5/133 (3%) Query: 1408 NRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDK 1467 NR N D AS IV P+KS ++++L S S SPR S K Sbjct: 346 NRGLRSNGISDAASEQISDRQPDIVDDHPSKS---RSRSLSPKRTVSKSTSVSPRRSQSK 402 Query: 1468 SKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK-KGIMRTPQASFDRSPCKSPGAS 1526 S S ++G RSP + + + R SP K + + R+P S RSP + Sbjct: 403 SPSSSPRWNGGRSPAKGSRQVKNLTNSRRESPGSEEKGRHVRRSPTKSVSRSPVRVK-KE 461 Query: 1527 RRSSKSGGEKLAR 1539 R S+S + L+R Sbjct: 462 RDISRSPSKSLSR 474 Score = 38.7 bits (86), Expect = 0.031 Identities = 44/124 (35%), Positives = 58/124 (46%), Gaps = 20/124 (16%) Query: 1434 KSPNKSSLKQTKTLHRSPR---GSFDQSRSPRGSIDKS--KSP---QQSFDGSRSPRGSI 1485 +SP K S +Q K L S R GS ++ R R S KS +SP ++ D SRSP S+ Sbjct: 414 RSPAKGS-RQVKNLTNSRRESPGSEEKGRHVRRSPTKSVSRSPVRVKKERDISRSPSKSL 472 Query: 1486 MKSRENSVDRSRSPKPAPKKGIMRTP-QASFDRSPCKSPGASRRSSKSGGEKLARLGTNS 1544 SRSP +PK+ I R+P + RSP +SP S G L R S Sbjct: 473 ----------SRSPLRSPKRVISRSPVRGRIARSPSRSPVRSASRGSLGRGPLRRSSRRS 522 Query: 1545 LDRA 1548 R+ Sbjct: 523 PSRS 526 Score = 35.9 bits (79), Expect = 0.22 Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 15/142 (10%) Query: 1405 SSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLK-QTKTLHR------SPRGSFDQ 1457 +S + DRSP R DR+ DR R ++ S +S L+ +T +R SP + Sbjct: 695 TSPSPDRSPYRFSDRSDRDRFR-SRRRFSPSRFRSPLRGRTPPRYRRRSRSVSPGLCYRN 753 Query: 1458 SRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKP---APKKGIMRTPQAS 1514 R R I +S+SP S S S+ SR S +S S P + + R+P + Sbjct: 754 RRYSRSPI-RSRSPPYRKRRSPSASHSLSPSRSRSRSKSYSKSPIGTGKARSVSRSPSKA 812 Query: 1515 FDRSPCKSPGASRRSSKSGGEK 1536 RSP KS S +S GG+K Sbjct: 813 --RSPSKSDSTSSDNS-PGGKK 831 Score = 31.1 bits (67), Expect = 6.3 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 1442 KQTKTLHRSPRGSFD--QSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSP 1499 K+ ++LH+ R D ++R R + + +Q D R P + S RS SP Sbjct: 328 KEAESLHQGKRKGPDLLENRGLRSNGISDAASEQISD--RQP-DIVDDHPSKSRSRSLSP 384 Query: 1500 KPAPKKGIMRTPQASFDRSPCKSPGASRRSSKSGGEKLARLGTNS 1544 K K +P+ S +SP SP + S + G + + TNS Sbjct: 385 KRTVSKSTSVSPRRSQSKSPSSSPRWNGGRSPAKGSRQVKNLTNS 429 >At1g16610.2 68414.m01990 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 407 Score = 44.0 bits (99), Expect = 8e-04 Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 9/90 (10%) Query: 1420 ASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFD-GS 1478 A P R R + + S SS ++ + SP S +SRS S+ S SP +S GS Sbjct: 2 AKPSRGRRSPSVSGSSSRSSSRSRSGS---SPSRSISRSRSRSRSLSSSSSPSRSVSSGS 58 Query: 1479 RSP--RGSIMKSRENSVDRSRSPKPAPKKG 1506 RSP RG KS R RSP P P KG Sbjct: 59 RSPPRRG---KSPAGPARRGRSPPPPPSKG 85 Score = 39.9 bits (89), Expect = 0.014 Identities = 38/111 (34%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Query: 1449 RSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIM 1508 RSP S SRS S S SP +S SRS S+ S S S + P++G Sbjct: 9 RSPSVSGSSSRSSSRSRSGS-SPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRGKS 67 Query: 1509 RTPQASFDRSPCKSP--GASRRSSKSGGEKLARLGTNSLDRATHYSQLAKV 1557 A RSP P GAS S K+ E L L +SL R + + L ++ Sbjct: 68 PAGPARRGRSPPPPPSKGASSPSKKAVQESLV-LHVDSLSRNVNEAHLKEI 117 Score = 37.1 bits (82), Expect = 0.096 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 1257 GNISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDKEPAGSRS 1316 G+ SR +S+ + S R RS+++ + + V+S + +P K PAG Sbjct: 15 GSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSS-SSPSRSVSSGSRSPPRRGKSPAGPAR 73 Query: 1317 EGEDEPPPP 1325 G PPPP Sbjct: 74 RGRSPPPPP 82 Score = 33.1 bits (72), Expect = 1.6 Identities = 42/142 (29%), Positives = 55/142 (38%), Gaps = 12/142 (8%) Query: 1403 SGSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSP---RGSFDQSR 1459 + + +D P R +R SP R +S + SP RG R Sbjct: 202 AAADAEKDGGPRRPRERLSPRRRSPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRR 261 Query: 1460 SP----RGSIDKSKSPQQSFDGSR-SPR---GSIMKSRENSVDRSRSPKPAPKKGI-MRT 1510 P RG S P++ R SPR GS ++ R R RSP P + R+ Sbjct: 262 RPASPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRS 321 Query: 1511 PQASFDRSPCKSPGASRRSSKS 1532 P RSP + PG SR SS S Sbjct: 322 PIRRRSRSPIRRPGRSRSSSIS 343 Score = 33.1 bits (72), Expect = 1.6 Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 17/136 (12%) Query: 1400 RSCSGSSINRDRSPNRSLDR---ASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFD 1456 RS S R RSP R R SP R R + +SP L+ RSP Sbjct: 270 RSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPP--RRSPIRR-- 325 Query: 1457 QSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFD 1516 +SRSP +S+S S R P G + R +S S SP+ P+K S Sbjct: 326 RSRSPIRRPGRSRSSSISPRKGRGPAGR--RGRSSSYSSSPSPRRIPRK-------ISRS 376 Query: 1517 RSPCKSPGASRRSSKS 1532 RSP K P +RSS + Sbjct: 377 RSP-KRPLRGKRSSSN 391 >At1g16610.1 68414.m01989 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 414 Score = 44.0 bits (99), Expect = 8e-04 Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 9/90 (10%) Query: 1420 ASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFD-GS 1478 A P R R + + S SS ++ + SP S +SRS S+ S SP +S GS Sbjct: 2 AKPSRGRRSPSVSGSSSRSSSRSRSGS---SPSRSISRSRSRSRSLSSSSSPSRSVSSGS 58 Query: 1479 RSP--RGSIMKSRENSVDRSRSPKPAPKKG 1506 RSP RG KS R RSP P P KG Sbjct: 59 RSPPRRG---KSPAGPARRGRSPPPPPSKG 85 Score = 39.9 bits (89), Expect = 0.014 Identities = 38/111 (34%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Query: 1449 RSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIM 1508 RSP S SRS S S SP +S SRS S+ S S S + P++G Sbjct: 9 RSPSVSGSSSRSSSRSRSGS-SPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRGKS 67 Query: 1509 RTPQASFDRSPCKSP--GASRRSSKSGGEKLARLGTNSLDRATHYSQLAKV 1557 A RSP P GAS S K+ E L L +SL R + + L ++ Sbjct: 68 PAGPARRGRSPPPPPSKGASSPSKKAVQESLV-LHVDSLSRNVNEAHLKEI 117 Score = 37.1 bits (82), Expect = 0.096 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 1257 GNISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDKEPAGSRS 1316 G+ SR +S+ + S R RS+++ + + V+S + +P K PAG Sbjct: 15 GSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSS-SSPSRSVSSGSRSPPRRGKSPAGPAR 73 Query: 1317 EGEDEPPPP 1325 G PPPP Sbjct: 74 RGRSPPPPP 82 Score = 33.1 bits (72), Expect = 1.6 Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 17/136 (12%) Query: 1400 RSCSGSSINRDRSPNRSLDR---ASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFD 1456 RS S R RSP R R SP R R + +SP L+ RSP Sbjct: 277 RSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPP--RRSPIRR-- 332 Query: 1457 QSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFD 1516 +SRSP +S+S S R P G + R +S S SP+ P+K S Sbjct: 333 RSRSPIRRPGRSRSSSISPRKGRGPAGR--RGRSSSYSSSPSPRRIPRK-------ISRS 383 Query: 1517 RSPCKSPGASRRSSKS 1532 RSP K P +RSS + Sbjct: 384 RSP-KRPLRGKRSSSN 398 Score = 32.7 bits (71), Expect = 2.1 Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 4/101 (3%) Query: 1434 KSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKS-KSPQQSFDGSRSPRGSIMKSRENS 1492 + P ++ T R S + RSP + +SP + R RGS ++ R Sbjct: 252 RRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRG--SPRRIRGSPVRRRSPL 309 Query: 1493 VDRSRSPKPAPKKGI-MRTPQASFDRSPCKSPGASRRSSKS 1532 R RSP P + R+P RSP + PG SR SS S Sbjct: 310 PLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSSSIS 350 >At1g32120.1 68414.m03952 expressed protein contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) Length = 1206 Score = 41.9 bits (94), Expect = 0.003 Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 11/178 (6%) Query: 1411 RSPN--RSLDRASPDRDRVTKV-IVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDK 1467 RSP S + +P RV+K + S + SS K RS + + + S+ Sbjct: 753 RSPEAINSRGQKNPPSPRVSKEPYMSSSLSVSSSSTRKKPPRSHEAANSRGYNHTPSLRA 812 Query: 1468 SKSPQQS--FDGSRSPRGSIMKSRENSVDRSRSPKPAPK--KGIMRTPQASFDRSPC--K 1521 SK P +S GS S R +S E S R + P+P+ K + +TP S S K Sbjct: 813 SKEPYKSSSLSGSSSTRKKPPRSHEASSSRGYNHPPSPRVSKELNKTPSISGSPSATRNK 872 Query: 1522 SPGASRRSSKSGGEKLARLGTNSLDRATHYSQLAKVEDKAMKMGIVVSKSTESIAKAI 1579 SP +S + G G + + R T S + ++ +K + +SK+ + + + + Sbjct: 873 SPRSSENVNSCGNSSSG--GNSVVKRNTDTSIIVSKQESPIKTQLDISKANKLLEEVV 928 >At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 41.5 bits (93), Expect = 0.004 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 1434 KSPNKS-SLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRG-SIMKSREN 1491 +S +KS S + +++ RS S +SRSP+ + +SP +S S PR S S Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSR-RSPAKSTSRSPGPRSKSRSPSPRR 266 Query: 1492 SVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSK 1531 S RSRSP P+ +K ++P SP KSP +R S+ Sbjct: 267 SRSRSRSPLPSVQKEGSKSPSKP---SPAKSPIHTRSPSR 303 Score = 39.1 bits (87), Expect = 0.024 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Query: 1404 GSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRG 1463 G S++R RS +RS R SP + + ++ KS ++S ++K+ SPR S +SRSP Sbjct: 219 GRSVSRSRSRSRSRSR-SP-KAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLP 276 Query: 1464 SIDK--SKSPQQ 1473 S+ K SKSP + Sbjct: 277 SVQKEGSKSPSK 288 Score = 37.9 bits (84), Expect = 0.055 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 6/87 (6%) Query: 1449 RSP-RG-SFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK-K 1505 RSP RG S+ +SRS S+S +S SRSP+ KS S +S S P P+ K Sbjct: 202 RSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKA---KSSRRSPAKSTSRSPGPRSK 258 Query: 1506 GIMRTPQASFDRSPCKSPGASRRSSKS 1532 +P+ S RS P + SKS Sbjct: 259 SRSPSPRRSRSRSRSPLPSVQKEGSKS 285 Score = 37.1 bits (82), Expect = 0.096 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 10/86 (11%) Query: 1467 KSKSPQQSFDGSRS-PRG-SIMKSRENSVDRSRSPKP-----APKKGIMRTP-QASFDRS 1518 +S S +S+ SRS RG S+ +SR S RSRSPK +P K R+P S RS Sbjct: 202 RSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRS 261 Query: 1519 PCKSPGASRRSSKSGGEKLARLGTNS 1544 P SP SR S+S + + G+ S Sbjct: 262 P--SPRRSRSRSRSPLPSVQKEGSKS 285 Score = 33.1 bits (72), Expect = 1.6 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 1468 SKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK-KGIMRTPQASFDRSP---CKSP 1523 S+SP + S+S S +S S RSRS +PK K R+P S RSP KS Sbjct: 201 SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR 260 Query: 1524 GASRRSSKS 1532 S R S+S Sbjct: 261 SPSPRRSRS 269 >At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 41.5 bits (93), Expect = 0.004 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 1434 KSPNKS-SLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRG-SIMKSREN 1491 +S +KS S + +++ RS S +SRSP+ + +SP +S S PR S S Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSR-RSPAKSTSRSPGPRSKSRSPSPRR 266 Query: 1492 SVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSK 1531 S RSRSP P+ +K ++P SP KSP +R S+ Sbjct: 267 SRSRSRSPLPSVQKEGSKSPSKP---SPAKSPIHTRSPSR 303 Score = 39.1 bits (87), Expect = 0.024 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Query: 1404 GSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRG 1463 G S++R RS +RS R SP + + ++ KS ++S ++K+ SPR S +SRSP Sbjct: 219 GRSVSRSRSRSRSRSR-SP-KAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLP 276 Query: 1464 SIDK--SKSPQQ 1473 S+ K SKSP + Sbjct: 277 SVQKEGSKSPSK 288 Score = 37.9 bits (84), Expect = 0.055 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 6/87 (6%) Query: 1449 RSP-RG-SFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK-K 1505 RSP RG S+ +SRS S+S +S SRSP+ KS S +S S P P+ K Sbjct: 202 RSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKA---KSSRRSPAKSTSRSPGPRSK 258 Query: 1506 GIMRTPQASFDRSPCKSPGASRRSSKS 1532 +P+ S RS P + SKS Sbjct: 259 SRSPSPRRSRSRSRSPLPSVQKEGSKS 285 Score = 37.1 bits (82), Expect = 0.096 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 10/86 (11%) Query: 1467 KSKSPQQSFDGSRS-PRG-SIMKSRENSVDRSRSPKP-----APKKGIMRTP-QASFDRS 1518 +S S +S+ SRS RG S+ +SR S RSRSPK +P K R+P S RS Sbjct: 202 RSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRS 261 Query: 1519 PCKSPGASRRSSKSGGEKLARLGTNS 1544 P SP SR S+S + + G+ S Sbjct: 262 P--SPRRSRSRSRSPLPSVQKEGSKS 285 Score = 33.1 bits (72), Expect = 1.6 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 1468 SKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK-KGIMRTPQASFDRSP---CKSP 1523 S+SP + S+S S +S S RSRS +PK K R+P S RSP KS Sbjct: 201 SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR 260 Query: 1524 GASRRSSKS 1532 S R S+S Sbjct: 261 SPSPRRSRS 269 >At2g29210.1 68415.m03550 splicing factor PWI domain-containing protein contains Pfam profile PF01480: PWI domain Length = 878 Score = 39.5 bits (88), Expect = 0.018 Identities = 39/140 (27%), Positives = 52/140 (37%), Gaps = 1/140 (0%) Query: 1400 RSCSGSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459 RS S S I R R P R SP R + + + S RSP + R Sbjct: 282 RSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHR 341 Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSP 1519 SP + +SP RSP + + R S R P+P R+P + R+ Sbjct: 342 SPTPPARQRRSPSPPARRHRSPPPA-RRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNR 400 Query: 1520 CKSPGASRRSSKSGGEKLAR 1539 SP R S+S K R Sbjct: 401 SPSPLYRRNRSRSPLAKRGR 420 Score = 35.5 bits (78), Expect = 0.29 Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 1406 SINRDRSPNRSLDRA-SPDRDRVTKVIVCKS--PNKSSLKQTKTLHRSPRGSFDQSRSPR 1462 S +R RS +RS+ R+ SP R R+ +S P + + T R + RSP Sbjct: 255 SNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPS 314 Query: 1463 GSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRT-PQASFDRSPCK 1521 + +SP RSP + R + + P+P R+ P A RSP Sbjct: 315 PPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPARRHRSPPPARRRRSP-- 372 Query: 1522 SPGASRRSSKS 1532 SP A RR S S Sbjct: 373 SPPARRRRSPS 383 Score = 33.9 bits (74), Expect = 0.89 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 3/116 (2%) Query: 1408 NRDRSPN-RSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSID 1466 +RDR + R D + ++R +I + + S + RS + S+S G Sbjct: 176 SRDRPEDGRRADEKNGVKERRRDLIPPRRGDASRSPLRGSRSRSISKTNSGSKSYSGE-R 234 Query: 1467 KSKSPQQSFDGSRSPRGS-IMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCK 1521 KS+S QS D S SPR + SR S RS +P++ + +P S RSP + Sbjct: 235 KSRSTSQSSDASISPRKRRLSNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIR 290 Score = 32.3 bits (70), Expect = 2.7 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 12/127 (9%) Query: 1413 PNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQ 1472 P R +PD +RV+ + + S +KQ ++ SP +S SP K++SP Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSM--SPVRGRGKS-SPSSRHQKARSPV 581 Query: 1473 QSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSKS 1532 + RSP +SR RS S +P + R+P +S S +SP RS Sbjct: 582 RR----RSPTPVNRRSR-----RSSSASRSPDRRRRRSPSSSRSPSRSRSPPVLHRSPSP 632 Query: 1533 GGEKLAR 1539 G K R Sbjct: 633 RGRKHQR 639 Score = 30.7 bits (66), Expect = 8.3 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 1449 RSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENS--VDRSRSPKPAPKKG 1506 RSP + RSP + + +SP RSP + R S R+RSP P ++ Sbjct: 351 RSPSPPARRHRSPPPA-RRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRN 409 Query: 1507 IMRTPQASFDRSPCKSPGAS 1526 R+P A RS SPG S Sbjct: 410 RSRSPLAKRGRSD--SPGRS 427 >At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a) almost identical to SC35-like splicing factor SCL30a GI:9843661 from [Arabidopsis thaliana]; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 38.3 bits (85), Expect = 0.041 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 1411 RSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKS 1470 RSP R S R R K S+ + R S+ +S GS +S S Sbjct: 147 RSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSPQDRRYEKER-SYSRSPPHNGSRVRSGS 205 Query: 1471 PQQSFDGSRSPRGSIM--KSRENSVDRSRSPKPAPKKGIMRTP----QASFDRSP 1519 P + SRSPR S+ K+R + +++RS P P++ TP + DRSP Sbjct: 206 PGRVKSHSRSPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPVPRGAQNGDRSP 260 >At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30) nearly identical to SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] GI:9843657; Serine/arginine-rich protein/putative splicing factor, Arabidopdis thaliana, EMBL:AF099940; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 37.1 bits (82), Expect = 0.096 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 13/93 (13%) Query: 1415 RSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKS--KSPQ 1472 RS++R S +T V+ +S + + KT RS R P GS D+S +S Sbjct: 106 RSMNRRSFAGREITVVVASESRKRPEEMRVKTRTRS--------REPSGSRDRSHGRSRS 157 Query: 1473 QSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKK 1505 +S SRSPR S S RSRS PAP++ Sbjct: 158 RSISRSRSPR---RPSDSRSRYRSRSYSPAPRR 187 >At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein contains Pfam domain PF00098: Zinc knuckle Length = 284 Score = 37.1 bits (82), Expect = 0.096 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 5/105 (4%) Query: 1404 GSSINRDRSPNRSLDRASPDRDRVTKV----IVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459 G S +R RSP R +++ DR R K + K ++S K + SP+ D Sbjct: 176 GRSYSRSRSPVRR-EKSVEDRSRSPKAMERSVSPKGRDQSLSPDRKVIDASPKRGSDYDG 234 Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK 1504 SP+ + + S G SP G + R D + +P+PK Sbjct: 235 SPKENGNGRNSASPIVGGGESPVGLNGQDRSPIDDEAELSRPSPK 279 Score = 34.7 bits (76), Expect = 0.51 Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 1433 CK-SPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSREN 1491 CK SP+ +Q + RSP S R S +S S +S+ SRSP RE Sbjct: 136 CKNSPSPKKARQGGSYSRSPVKSRSPRRRRSPSRSRSYSRGRSYSRSRSP-----VRREK 190 Query: 1492 SV-DRSRSPK 1500 SV DRSRSPK Sbjct: 191 SVEDRSRSPK 200 >At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein contains Pfam domain PF00098: Zinc knuckle Length = 243 Score = 37.1 bits (82), Expect = 0.096 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 5/105 (4%) Query: 1404 GSSINRDRSPNRSLDRASPDRDRVTKV----IVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459 G S +R RSP R +++ DR R K + K ++S K + SP+ D Sbjct: 135 GRSYSRSRSPVRR-EKSVEDRSRSPKAMERSVSPKGRDQSLSPDRKVIDASPKRGSDYDG 193 Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK 1504 SP+ + + S G SP G + R D + +P+PK Sbjct: 194 SPKENGNGRNSASPIVGGGESPVGLNGQDRSPIDDEAELSRPSPK 238 Score = 34.7 bits (76), Expect = 0.51 Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 1433 CK-SPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSREN 1491 CK SP+ +Q + RSP S R S +S S +S+ SRSP RE Sbjct: 95 CKNSPSPKKARQGGSYSRSPVKSRSPRRRRSPSRSRSYSRGRSYSRSRSP-----VRREK 149 Query: 1492 SV-DRSRSPK 1500 SV DRSRSPK Sbjct: 150 SVEDRSRSPK 159 >At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 303 Score = 36.3 bits (80), Expect = 0.17 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 9/92 (9%) Query: 1449 RSPRGSFDQSRSPRGSID-KSKSPQQSFDGS---RSPRGSIMK----SRENSVD-RSRSP 1499 RS S D+ R RG D +S+S +S S RSPR S + +RE S D RS Sbjct: 185 RSRSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNER 244 Query: 1500 KPAPKKGIMRTPQASFDRSPCKSPGASRRSSK 1531 P+P++ + A SP K RRS++ Sbjct: 245 SPSPRRSLSPRSPALQKASPSKEMSPERRSNE 276 >At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 303 Score = 36.3 bits (80), Expect = 0.17 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 9/92 (9%) Query: 1449 RSPRGSFDQSRSPRGSID-KSKSPQQSFDGS---RSPRGSIMK----SRENSVD-RSRSP 1499 RS S D+ R RG D +S+S +S S RSPR S + +RE S D RS Sbjct: 185 RSRSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNER 244 Query: 1500 KPAPKKGIMRTPQASFDRSPCKSPGASRRSSK 1531 P+P++ + A SP K RRS++ Sbjct: 245 SPSPRRSLSPRSPALQKASPSKEMSPERRSNE 276 >At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 278 Score = 35.9 bits (79), Expect = 0.22 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 7/80 (8%) Query: 1455 FDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQAS 1514 +D R R S + +S +S RSP S +SR S +SRSPK K + R+P S Sbjct: 193 YDSRRDSR-SPSRGRSYSKSRSRGRSPSRS--RSRSRSRSKSRSPK---AKSLRRSPAKS 246 Query: 1515 FDRSP-CKSPGASRRSSKSG 1533 RSP +S SR S G Sbjct: 247 TSRSPRSRSRSKSRSLSPRG 266 Score = 31.9 bits (69), Expect = 3.6 Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 14/85 (16%) Query: 1406 SINRDRSPNRSLDRA-SPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGS 1464 S +R RS ++S R SP R R +S +KS + K+L RSP S SRSPR S Sbjct: 201 SPSRGRSYSKSRSRGRSPSRSRSRS----RSRSKSRSPKAKSLRRSPAKS--TSRSPR-S 253 Query: 1465 IDKSKSPQQSFDGSRSPRGSIMKSR 1489 +SKS S SPRG + R Sbjct: 254 RSRSKSR------SLSPRGWVTVER 272 Score = 31.1 bits (67), Expect = 6.3 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 1449 RSP-RG-SFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPK 1500 RSP RG S+ +SRS S +S+S +S SRSP+ ++ R + SRSP+ Sbjct: 200 RSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKAKSLR-RSPAKSTSRSPR 252 >At4g36980.1 68417.m05240 expressed protein Length = 560 Score = 35.5 bits (78), Expect = 0.29 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 1426 RVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQ-SRSPRGSIDKSKSPQQSFDGSRSPRGS 1484 R+ + K K S +T R ++ + + R S ++ +S +S S PR Sbjct: 439 RIMNKQLTKQIKKDSATETAKKREQERQRLEKLAETSRLSRNRQRSRSRSISRSPPPRRH 498 Query: 1485 IMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSKSGGEKLARLGT 1542 +SR S RSR + + R+P S RSP + A GE+ A GT Sbjct: 499 -RRSRSRSGSRSRRSRRHSSRSRSRSPSRSLSRSPKRHADALHLIRGLPGEEAAGQGT 555 >At5g24880.1 68418.m02946 expressed protein ; expression supported by MPSS Length = 443 Score = 35.1 bits (77), Expect = 0.39 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%) Query: 1436 PNKSSLKQTKTLHRSPRGSFDQSRSPRGSID-KSKSPQQSF----DGSRSPRGSIMKSRE 1490 P+ +L +TK+L R P+ + S GS D K + P ++ SR G ++K Sbjct: 12 PDNQNLSRTKSLGRKPKQPLSTASSEDGSSDQKPEKPLPNYLKPTISSRPDAGKLLKKNN 71 Query: 1491 NSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSP 1523 NS+D ++ K ++ R P + S SP Sbjct: 72 NSLDDNQ--KLLRRRSFDRPPSSLTSPSTSASP 102 >At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00397: WW domain Length = 1088 Score = 35.1 bits (77), Expect = 0.39 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Query: 1449 RSPRGSFDQSRSPRGSIDKSKSPQQSF--DGSRSPRGSIMKSREN-SVDRSRSPKPAPKK 1505 R S+ +SRS GS +S+S +S+ SRSPR S + N S SRSP P ++ Sbjct: 965 RRRSSSYSRSRSRSGSYSRSRSRSRSWSRSRSRSPRHSRDRGGHNRSRSYSRSPSPVYER 1024 Query: 1506 GIMRTPQAS-FDRSP 1519 R P+ S FD P Sbjct: 1025 R-DRAPRVSGFDIKP 1038 Score = 30.7 bits (66), Expect = 8.3 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 7/76 (9%) Query: 1457 QSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSREN----SVDRSRSPKPAPKKGIMRTPQ 1512 +SRS + + + S+ SRS GS +SR S RSRSP+ + +G Sbjct: 953 RSRSRSPDLVRPRRRSSSYSRSRSRSGSYSRSRSRSRSWSRSRSRSPRHSRDRG-GHNRS 1011 Query: 1513 ASFDRSPCKSPGASRR 1528 S+ RSP SP RR Sbjct: 1012 RSYSRSP--SPVYERR 1025 >At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 285 Score = 34.7 bits (76), Expect = 0.51 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Query: 1467 KSKSPQQSFDGSRS-PRG-SIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPG 1524 +S S +S+ SRS RG S+ +SR S RSRSPK K R+P S RSP P Sbjct: 202 RSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPK---AKSSRRSPAKSTSRSP--GPR 256 Query: 1525 ASRRS 1529 + RS Sbjct: 257 SKSRS 261 >At1g74160.1 68414.m08589 expressed protein Length = 1030 Score = 34.3 bits (75), Expect = 0.67 Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 16/193 (8%) Query: 1415 RSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQ- 1473 + + R PD D+ T K K + S SFD+ R SK PQQ Sbjct: 518 KKIRREKPD-DKGTSASNSKRVTKDCSPGNRRAE-SCTSSFDKKSDSRNVRSSSKKPQQV 575 Query: 1474 SFDGSRSPRGSI---MKSRENSVD-RSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRS 1529 S + + GS+ ++ ++ D RSR P P P R P ++ SPG RR Sbjct: 576 SKESASKSSGSVSPRLQQKKLEYDKRSRPPTP-PDSSKSRKP-SNQQLVESTSPGGRRRP 633 Query: 1530 SKSGGEKLARLGTNSLDRATHYSQLAK---VEDKAMKMGIVVSKSTESI-AKAIEHTTCV 1585 G+K + + L +A++ S+ + + V KSTE+ K+ Sbjct: 634 K---GQKSLQQVDDQLSQASNESRTSSHGICTQSETEASACVEKSTEADGGKSPSVIEAA 690 Query: 1586 QCYLSGKRQSKSS 1598 + +S Q+KSS Sbjct: 691 KAVVSNLMQNKSS 703 >At5g27870.1 68418.m03343 pectinesterase family protein similar to pectinesterase (EC 3.1.1.11) from Salix gilgiana GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus vulgaris SP|Q43111; contains Pfam profile PF01095 pectinesterase Length = 732 Score = 33.9 bits (74), Expect = 0.89 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 1458 SRSPRGSIDKSKSPQQSFDGSRS--PRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASF 1515 S +P + S SP GS S P + S S S SP +P +P AS Sbjct: 652 SDTPSSLVSPSTSPPAGHLGSPSDTPSSVVTPSASPSTSPSASPSVSPSAFPSASPSASP 711 Query: 1516 DRSPCKSPGASRRSS 1530 SP SP AS +S Sbjct: 712 SASPSVSPSASPSAS 726 >At4g37100.1 68417.m05255 hypothetical protein Length = 896 Score = 33.9 bits (74), Expect = 0.89 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Query: 1418 DRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDG 1477 D S DRD T + + S+ + L +SP S D+S ID +SP S Sbjct: 464 DNISSDRDGTTSTTIFEETESVSVGE---LMKSPVFSEDESSDNSFWIDLGQSPLGSDQH 520 Query: 1478 SR--SPRGSIMKSRENSVDRSRSPKPAPK 1504 ++ SP I + + + +SPKP PK Sbjct: 521 NKIASPLPPIWLTNKRKQKQRQSPKPIPK 549 >At3g02890.1 68416.m00284 PHD finger protein-related contains low similarity to PHD-finger domain proteins Length = 963 Score = 33.9 bits (74), Expect = 0.89 Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 13/206 (6%) Query: 1406 SINRDRSPNRSLDR--ASPDRDRVTKVIVCKSPNKSSLKQTKTLHR--SPRGSFDQSRS- 1460 ++N S R +D+ A PD R+ SP +S L + TL R S +G +R Sbjct: 272 NVNTQISSKRHIDKFEAVPDSKRLAVGAQIGSPKRSVLPRMSTLSRETSFKGLEKPTRKL 331 Query: 1461 ------PRGSIDKSKSPQQSFDGSRSPRGSIMKSRE-NSVDRSRSPKPAPKKGIMRTPQA 1513 S D ++S + + +SP+GS +KS NS+ +P + R Sbjct: 332 AHYSSFNSHSSDDTESTRSTDSQLQSPKGSFLKSNSFNSLSSRSKVRPVDDDMLPRQKTG 391 Query: 1514 SFDRSPCKSPGASRRSSKSGGEKLARLG-TNSLDRATHYSQLAKVEDKAMKMGIVVSKST 1572 + + S G S+ KS + +G +N D S+ K +S+ Sbjct: 392 NENSSLEVKEGFSKNVGKSMSSRCIDVGSSNCNDSKVKGSKQLKDWSTEANPSASISRGN 451 Query: 1573 ESIAKAIEHTTCVQCYLSGKRQSKSS 1598 SI A GK+ SS Sbjct: 452 SSIPYAKSPRDLKDLQSDGKQVGDSS 477 >At2g43680.2 68415.m05430 calmodulin-binding family protein similar to SF16 protein [Helianthus annuus] GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif Length = 669 Score = 33.9 bits (74), Expect = 0.89 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 5/112 (4%) Query: 1422 PDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSP 1481 P DR P +S + SPR + + SPR + ++ SP+ + P Sbjct: 80 PTPDRPNPYSASPPPRPASPRVASPRPTSPRVASPRVPSPRAEVPRTLSPKPPSPRAEVP 139 Query: 1482 RGSIMK--SRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSK 1531 R K S + RS SPKP + + AS + P P ++R S+ Sbjct: 140 RSLSPKPPSPRADLPRSLSPKPFDRS---KPSSASANAPPTLRPASTRVPSQ 188 Score = 31.9 bits (69), Expect = 3.6 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 8/130 (6%) Query: 1405 SSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHR--SPRGSFDQSRSPR 1462 + + R SP + DR+ P + + Q T H SPR S + SP+ Sbjct: 151 ADLPRSLSP-KPFDRSKPSSASANAPPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQ 209 Query: 1463 GSIDKSKSPQ---QSFDGSR--SPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDR 1517 K SP+ + D R SPR + +++ +D +R P P + P+ R Sbjct: 210 AISSKPPSPRAEPPTLDTPRPPSPRAASLRADPPRLDAARPTTPRPPSPLADAPRLDAPR 269 Query: 1518 SPCKSPGASR 1527 P + R Sbjct: 270 PTTPKPPSPR 279 >At2g43680.1 68415.m05429 calmodulin-binding family protein similar to SF16 protein [Helianthus annuus] GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif Length = 668 Score = 33.9 bits (74), Expect = 0.89 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 5/112 (4%) Query: 1422 PDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSP 1481 P DR P +S + SPR + + SPR + ++ SP+ + P Sbjct: 79 PTPDRPNPYSASPPPRPASPRVASPRPTSPRVASPRVPSPRAEVPRTLSPKPPSPRAEVP 138 Query: 1482 RGSIMK--SRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSK 1531 R K S + RS SPKP + + AS + P P ++R S+ Sbjct: 139 RSLSPKPPSPRADLPRSLSPKPFDRS---KPSSASANAPPTLRPASTRVPSQ 187 Score = 31.9 bits (69), Expect = 3.6 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 8/130 (6%) Query: 1405 SSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHR--SPRGSFDQSRSPR 1462 + + R SP + DR+ P + + Q T H SPR S + SP+ Sbjct: 150 ADLPRSLSP-KPFDRSKPSSASANAPPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQ 208 Query: 1463 GSIDKSKSPQ---QSFDGSR--SPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDR 1517 K SP+ + D R SPR + +++ +D +R P P + P+ R Sbjct: 209 AISSKPPSPRAEPPTLDTPRPPSPRAASLRADPPRLDAARPTTPRPPSPLADAPRLDAPR 268 Query: 1518 SPCKSPGASR 1527 P + R Sbjct: 269 PTTPKPPSPR 278 >At5g22450.1 68418.m02618 expressed protein Length = 1180 Score = 33.5 bits (73), Expect = 1.2 Identities = 21/71 (29%), Positives = 30/71 (42%) Query: 1250 SAGNIEVGNISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDK 1309 + G+ N E S E + SG ++R I DV+ +V +S + V S Sbjct: 1006 NGGSGTASNTLNEPSNHQAEAKGSGAVSSTKRREALIDDVIGCASSKVTTSKGSAVLSGG 1065 Query: 1310 EPAGSRSEGED 1320 G RSE ED Sbjct: 1066 GAQGKRSERED 1076 >At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical to gi_11935088_gb_AAG41964 Length = 209 Score = 33.5 bits (73), Expect = 1.2 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 1256 VGNISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDKEPAGSR 1315 VG S +S T S P +S + K +SA++PVES K PA Sbjct: 19 VGGQSPISSPTKSPTTPSAPTTS-PTKSPAVTSPTTAPAKTPTASASSPVESPKSPA--- 74 Query: 1316 SEGEDEPPPPPVKRSLGRTP 1335 E PPP PV S P Sbjct: 75 PVSESSPPPTPVPESSPPVP 94 >At3g25840.1 68416.m03219 protein kinase family protein contains Pfam profile: PF00069 eukaryotic protein kinase domain Length = 935 Score = 33.5 bits (73), Expect = 1.2 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%) Query: 1400 RSCSGSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459 R S + RDRS R +DR RDR ++ K +K S + + R R + R Sbjct: 246 RQYSREVLERDRSKERDMDREGSIRDRDSE--GSKRRDKDS-DRRREREREKRREIESDR 302 Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSR 1497 R ++ +S + D + G ++ R N RSR Sbjct: 303 ERRKEKERERSIDR--DRRKEREGDYLRDRANERGRSR 338 >At5g48610.1 68418.m06012 expressed protein ; expression supported by MPSS Length = 470 Score = 33.1 bits (72), Expect = 1.6 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 8/126 (6%) Query: 1411 RSPNRSLDRASPDRDRVTKVIVCKS-PNKSSLKQTKTLHRSPRG-SFDQSRSPRGSIDKS 1468 +S ++ R S D ++ K N+ ++QT++ +S R + +S PR Sbjct: 166 KSSENAVSRVSFGADHKRAEVMGKPMENRDQVRQTESAEKSHRKENVTKSEKPRDQEGVK 225 Query: 1469 KSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKG--IMRTPQASFDRSPCKSPGAS 1526 K+ + D ++ + + + S++++R KP +G + + S D CK P S Sbjct: 226 KTEAKDKDRNKEKK----EEKTESINKTRQEKPKLIRGPKLEEREKDSPDLRNCKLPDVS 281 Query: 1527 RRSSKS 1532 R S K+ Sbjct: 282 RTSIKN 287 >At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30) nearly identical to SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana] GI:4775270 Length = 268 Score = 33.1 bits (72), Expect = 1.6 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 1432 VCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQ-QSFDGSRSPRGSIMKSRE 1490 V +SP+ S ++++ R P S+ S+S S +S SP+ + SRS S+ +S+ Sbjct: 190 VSRSPDDSKSYRSRSRSRGPSCSYS-SKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQS 248 Query: 1491 NSVDRSRSPKPAP 1503 S RSRS +P Sbjct: 249 RSKSRSRSRSNSP 261 >At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41 (RSP41) nearly identical to SP|P92966 Arginine/serine-rich splicing factor RSP41 {Arabidopsis thaliana} Length = 357 Score = 32.7 bits (71), Expect = 2.1 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 14/119 (11%) Query: 1409 RDRSPNRSLDRASPDRDRVTKVIVCK----SPNKSSLKQTKTLHRSPRGSFDQSRSPRGS 1464 R SP R +R SPD R + K SP+ +++ + ++ R S D R R Sbjct: 191 RSPSPYRR-ERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRR 249 Query: 1465 IDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSP 1523 ++ SP+ +RSPR K R SRSP P K+ R+P R +SP Sbjct: 250 -ERVASPENGAVRNRSPR----KGR----GESRSPPPYEKRRESRSPPPYEKRRESRSP 299 Score = 31.9 bits (69), Expect = 3.6 Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 11/126 (8%) Query: 1409 RDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKS 1468 RDRSP+R SP R + + + K+ +T RG RSP Sbjct: 182 RDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGR----RSPSPYKRAR 237 Query: 1469 KSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPG--AS 1526 SP D R R + S EN R+RSP+ +G R+P R +SP Sbjct: 238 LSPDYKRDDRRRER---VASPENGAVRNRSPRKG--RGESRSPPPYEKRRESRSPPPYEK 292 Query: 1527 RRSSKS 1532 RR S+S Sbjct: 293 RRESRS 298 >At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41 (RSP41) nearly identical to SP|P92966 Arginine/serine-rich splicing factor RSP41 {Arabidopsis thaliana} Length = 356 Score = 32.7 bits (71), Expect = 2.1 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 14/119 (11%) Query: 1409 RDRSPNRSLDRASPDRDRVTKVIVCK----SPNKSSLKQTKTLHRSPRGSFDQSRSPRGS 1464 R SP R +R SPD R + K SP+ +++ + ++ R S D R R Sbjct: 191 RSPSPYRR-ERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRR 249 Query: 1465 IDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSP 1523 ++ SP+ +RSPR K R SRSP P K+ R+P R +SP Sbjct: 250 -ERVASPENGAVRNRSPR----KGR----GESRSPPPYEKRRESRSPPPYEKRRESRSP 299 Score = 31.9 bits (69), Expect = 3.6 Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 11/126 (8%) Query: 1409 RDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKS 1468 RDRSP+R SP R + + + K+ +T RG RSP Sbjct: 182 RDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGR----RSPSPYKRAR 237 Query: 1469 KSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPG--AS 1526 SP D R R + S EN R+RSP+ +G R+P R +SP Sbjct: 238 LSPDYKRDDRRRER---VASPENGAVRNRSPRKG--RGESRSPPPYEKRRESRSPPPYEK 292 Query: 1527 RRSSKS 1532 RR S+S Sbjct: 293 RRESRS 298 >At4g09270.1 68417.m01535 hypothetical protein same aa sequence as protein T8A17_30 because of location on repetitive section Length = 100 Score = 32.3 bits (70), Expect = 2.7 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Query: 1257 GNISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDKEPAGSRS 1316 G ++ + + ++ G +P Q + + + + N R+ +A AP + ++P + Sbjct: 8 GRVANQRANRVDDAPADGEAQPLIQGIRGMFEELMN---RIPQAAPAPAPTAQQPEENVL 64 Query: 1317 EGEDEPPPPP 1326 + +PPPPP Sbjct: 65 PQQQQPPPPP 74 >At4g09220.1 68417.m01528 hypothetical protein Length = 100 Score = 32.3 bits (70), Expect = 2.7 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Query: 1257 GNISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDKEPAGSRS 1316 G ++ + + ++ G +P Q + + + + N R+ +A AP + ++P + Sbjct: 8 GRVANQRANRVDDAPADGEAQPLIQGIRGMFEELMN---RIPQAAPAPAPTAQQPEENVL 64 Query: 1317 EGEDEPPPPP 1326 + +PPPPP Sbjct: 65 PQQQQPPPPP 74 >At1g24150.1 68414.m03047 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 725 Score = 32.3 bits (70), Expect = 2.7 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 1257 GNISRENSQDAEETQDSGP--EEPF-RQRSKTIGDVVENGGKRVASSAAAP-VESDKEPA 1312 G+ +N ++ + SGP E P R RS T V+ N R A++ P V++D Sbjct: 177 GDDEEKNVIYSKSKKKSGPVTETPLLRGRSSTSHSVIHNDNYRNATTTHPPHVKTDSFEF 236 Query: 1313 GSRSEGEDEPPPPPVKRSLGRTP 1335 PPPPP+ TP Sbjct: 237 VKPDPTPPPPPPPPIPVKQSATP 259 >At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 565 Score = 31.5 bits (68), Expect = 4.8 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Query: 1400 RSCSGSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459 R S +RDR +S +R S D+DR + +S + + R RG D Sbjct: 66 RDSEVSRRSRDRDGEKSKER-SRDKDRDHRERHHRSSRHRDHSRERG-ERRERGGRDDD- 122 Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKK 1505 R S D+ ++ G R R S +S++ S R+RS P+ K Sbjct: 123 DYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSERRTRSRSPSKSK 168 >At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 542 Score = 31.5 bits (68), Expect = 4.8 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Query: 1400 RSCSGSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459 R S +RDR +S +R S D+DR + +S + + R RG D Sbjct: 66 RDSEVSRRSRDRDGEKSKER-SRDKDRDHRERHHRSSRHRDHSRERG-ERRERGGRDDD- 122 Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKK 1505 R S D+ ++ G R R S +S++ S R+RS P+ K Sbjct: 123 DYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSERRTRSRSPSKSK 168 >At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 573 Score = 31.5 bits (68), Expect = 4.8 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Query: 1400 RSCSGSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459 R S +RDR +S +R S D+DR + +S + + R RG D Sbjct: 66 RDSEVSRRSRDRDGEKSKER-SRDKDRDHRERHHRSSRHRDHSRERG-ERRERGGRDDD- 122 Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKK 1505 R S D+ ++ G R R S +S++ S R+RS P+ K Sbjct: 123 DYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSERRTRSRSPSKSK 168 >At3g57300.1 68416.m06378 transcriptional activator, putative similar to transcriptional activator SRCAP [Homo sapiens] GI:5106572; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 1507 Score = 31.5 bits (68), Expect = 4.8 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%) Query: 861 PPKVSSRTNSFEIENLL-----KSAEQVTGWCRSPAETRRGSPTGSVASAAAGTPSRHLS 915 PPK S N F++E L+ K ++V + S + R + G VA+ + G+ SR ++ Sbjct: 7 PPKDSPYANLFDLEPLMKFRIPKPEDEVDYYGSSSQDESRSTQGGVVANYSNGSKSR-MN 65 Query: 916 DADKLRKVLLEVVDTE 931 + K RK E D E Sbjct: 66 ASSKKRKRWTEAEDAE 81 >At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch domain-containing protein / RNA recognition motif (RRM)-containing protein KIAA0122 gene , Homo sapiens, EMBL:HSDKG02; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF01585: G-patch domain, weak hit to PF00641: Zn-finger in Ran binding protein and others Length = 1105 Score = 31.5 bits (68), Expect = 4.8 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 7/97 (7%) Query: 1409 RDRSPNRSLDRASPDRDRV-TKVIVCKSPNKSSLKQ-TKTLHRSP-RGSFDQSRSPRGSI 1465 +DR N S DR RDR K + ++S K+ K+ RS RG F +SRSPRG Sbjct: 201 QDRERN-SRDREWDSRDREWDKRCYSRERDESPHKRYEKSRSRSTGRGEFSRSRSPRGRS 259 Query: 1466 DKSKSPQQSFDG---SRSPRGSIMKSRENSVDRSRSP 1499 + S++G + S R + R N S +P Sbjct: 260 HGRSYREDSYEGDHWNESERRREYEDRHNQDHFSATP 296 >At5g55660.1 68418.m06940 expressed protein similar to unknown protein (pir||T08929) Length = 778 Score = 31.1 bits (67), Expect = 6.3 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%) Query: 1260 SRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVES-------DKEPA 1312 S EN + EE+++ ++ ++ S+T D E+ GK + A P +S K A Sbjct: 570 SEENVESEEESEEETKKK--KRGSRTSSDKKESAGKSRSKKTAVPTKSSPPKKATQKRSA 627 Query: 1313 GSRSEGEDEPPPPP 1326 G R + +D+ P Sbjct: 628 GKRKKSDDDSDTSP 641 >At5g53870.1 68418.m06701 plastocyanin-like domain-containing protein contains similarity to SP|Q02917 Early nodulin 55-2 precursor {Glycine max}; PF02298: Plastocyanin-like domain Length = 370 Score = 31.1 bits (67), Expect = 6.3 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 1/89 (1%) Query: 1435 SPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVD 1494 SP + + +P + +S+ PR S+ ++ P+ S S +P S + +S Sbjct: 146 SPTQPPKSHSPVSPVAPASAPSKSQPPRSSVSPAQPPKSSSPISHTPALSPSHATSHS-P 204 Query: 1495 RSRSPKPAPKKGIMRTPQASFDRSPCKSP 1523 + SP P + +P S +P SP Sbjct: 205 ATPSPSPKSPSPVSHSPSHSPAHTPSHSP 233 >At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonucleoprotein, putative similar to transformer-SR ribonucleoprotein [Nicotiana tabacum] gi|1781299|emb|CAA70700 Length = 141 Score = 31.1 bits (67), Expect = 6.3 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 1460 SPRGSID-KSKSPQQSFDGSRSPRGSIMKSRENSVDRSRS-PKP-APKKGIMRTPQASFD 1516 SP+ D +S SP++ SRS S +SR RSRS P+P +P + R+ S Sbjct: 4 SPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRG 63 Query: 1517 RSPCKSPGAS 1526 RS ++PG + Sbjct: 64 RSEVENPGTT 73 >At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonucleoprotein, putative similar to transformer-SR ribonucleoprotein [Nicotiana tabacum] gi|1781299|emb|CAA70700 Length = 140 Score = 31.1 bits (67), Expect = 6.3 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Query: 1470 SPQQSFDG-SRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRR 1528 SPQ+ D S SPR +SR S RSRS +P + P+ SP +S G SR Sbjct: 4 SPQRRRDSRSPSPRKERARSRSRSRSRSRS-RPRLRSRSRSLPRPV---SPSRSRGRSR- 58 Query: 1529 SSKSGGEKLARLGT 1542 S+S G ++ GT Sbjct: 59 -SRSRGSEVENPGT 71 >At3g25500.1 68416.m03171 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 1051 Score = 31.1 bits (67), Expect = 6.3 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 1495 RSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSKSGGEKLARLGTNSLDRATHYSQL 1554 RSRSP + + +P+ + +SP SP S R+S+S R ++SLD + S + Sbjct: 458 RSRSPSSS-SSSVCSSPEKASHKSPVTSPKLSSRNSQSLSSSPDRDFSHSLDVSPRISNI 516 Query: 1555 A 1555 + Sbjct: 517 S 517 >At3g14880.1 68416.m01881 DNA-binding protein-related low similarity to tumor-related protein [Nicotiana glauca x Nicotiana langsdorffii] GI:688423, SP|O24160 TGACG-sequence specific DNA-binding protein TGA-2.1 {Nicotiana tabacum} Length = 237 Score = 31.1 bits (67), Expect = 6.3 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 214 IESVLSAWAAEEGLTSTGEYSEPDERIVRRRKLIKYKKRTDILNIRRIVYDVSIL 268 I LS W + G S+PD+RI R+L + RTD L +R I V +L Sbjct: 152 ITEELSEWQDDASDLVMGTSSDPDQRI---RRLAEIVHRTDDLRLRTITRVVEVL 203 >At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 551 Score = 31.1 bits (67), Expect = 6.3 Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 3/97 (3%) Query: 1437 NKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRS 1496 + SS + ++ SP S S SP S SP S S S S SRENS Sbjct: 454 DSSSPDSSSSVSSSPDSSSSVSSSPDSYSSFSSSPDSSSSVSSSLFSS---SRENSSSPD 510 Query: 1497 RSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSKSG 1533 S + + +S D S P A+ SS SG Sbjct: 511 YSNSVSSSLDYSGSVSSSSDYSSSVFPSANSSSSSSG 547 >At2g40040.1 68415.m04920 defective chloroplasts and leaves protein-related / DCL protein-related similar to DCL protein, chloroplast precursor (Defective chloroplasts and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon esculentum] Length = 839 Score = 31.1 bits (67), Expect = 6.3 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 3/134 (2%) Query: 1411 RSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKS 1470 +S N L + PDR P S + +P G +QS+ P SI Sbjct: 688 KSLNNYLMKKYPDRAEEFIDKYFTKPRPSGNRDRNNQDATPPGE-EQSQPPNQSIGNGGD 746 Query: 1471 PQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSS 1530 Q+ S+SP S +++ S +++SP + ++ S +S +S S+ S Sbjct: 747 DFQTQTQSQSP--SQTRAQSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQS 804 Query: 1531 KSGGEKLARLGTNS 1544 +S + ++ T S Sbjct: 805 QSQSQSPSQTQTQS 818 Score = 30.7 bits (66), Expect = 8.3 Identities = 23/87 (26%), Positives = 40/87 (45%) Query: 1443 QTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPA 1502 QT+T +SP + QS S + S++ QS S+S S +S+ S +S+S + Sbjct: 749 QTQTQSQSPSQTRAQSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQS 808 Query: 1503 PKKGIMRTPQASFDRSPCKSPGASRRS 1529 +T S ++ +SP + S Sbjct: 809 QSPSQTQTQSPSQTQAQAQSPSSQSPS 835 >At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4) contains Pfam domain PF00098: Zinc knuckle; identical to cDNA CAX-interacting protein 4 GI:27651998 Length = 332 Score = 31.1 bits (67), Expect = 6.3 Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 8/194 (4%) Query: 1405 SSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGS 1464 SS + S + D S + +R+ K SS+K+T ++ + + D+S S S Sbjct: 137 SSEEEEESESSDSDVDS-EMERIIAERFGKKKGGSSVKKTSSVRKKKKRVSDESDSDSDS 195 Query: 1465 IDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPG 1524 D+ + + S R S+ +S + RS+ K ++G R S D S + Sbjct: 196 GDRKRRRRSMKKRSSHKRRSLSESEDEEEGRSKRRK--ERRGRKRDEDDS-DESEDEDDR 252 Query: 1525 ASRRSSKSGGEKLARLGTNSLDRATHYSQLAKVEDKAMKMGIVVSKSTESIAKAIEHTTC 1584 +R S+ + +S D + S+ +D+ K V+ S++S A Sbjct: 253 RVKRKSRKEKRRRRSRRNHSDDSDSESSE----DDRRQKRRNKVAASSDSEANVSGDDVS 308 Query: 1585 VQCYLSGKRQSKSS 1598 S KR K S Sbjct: 309 RVGRGSSKRSEKKS 322 >At5g60150.1 68418.m07540 expressed protein ; expression supported by MPSS Length = 1195 Score = 30.7 bits (66), Expect = 8.3 Identities = 19/63 (30%), Positives = 29/63 (46%) Query: 1434 KSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSV 1493 +SP K+ Q L S R +S S S KSK+ S P+ S+ ++R N + Sbjct: 224 QSPIKAKNSQPTQLKNSQRSLGSESFSKNTSSTKSKTKSSLASKSSIPKPSLKQARRNVI 283 Query: 1494 DRS 1496 +S Sbjct: 284 SKS 286 >At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to cyclophylin [Digitalis lanata] GI:1563719; contains Pfam profile PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type; contains AT-donor splice site at intron 9 Length = 570 Score = 30.7 bits (66), Expect = 8.3 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 1409 RDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLK-QTKTLHRSPRGSFDQSRSPRGSIDK 1467 R RSP R R SP R + +SP+ + + + +SPR +S+SPR Sbjct: 470 RFRSPPR---RRSPPRYNRRRRSTSRSPDGYRRRLRDGSRSQSPRHR-SRSQSPRKRQPI 525 Query: 1468 SKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIM 1508 S+ + RSP S S+ S SP P K+G++ Sbjct: 526 SQDLKSRLGPQRSPIRGGRTSPAESLSPSHSPSPPGKRGLV 566 >At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing protein contains Pfam profile PF01429: Methyl-CpG binding domain Length = 254 Score = 30.7 bits (66), Expect = 8.3 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Query: 1436 PNK-SSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQS---FDGSRS--PRGSIMKSR 1489 PNK S+K+T+ + +P G +R KS + FD + S PR S S Sbjct: 24 PNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGNPAIAEFDWTTSGTPRRSARISE 83 Query: 1490 ENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSS 1530 + S +P K+G ++P + D KS G +S Sbjct: 84 KTKATPSPDKEPPKKRGRTKSPVSKKDAEGEKSEGGGEENS 124 >At3g01690.1 68416.m00101 expressed protein Length = 361 Score = 30.7 bits (66), Expect = 8.3 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Query: 1409 RDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKS 1468 RD P RS+DR R + T+ + P KS K + + + + SFDQ R S+D Sbjct: 278 RDAPPRRSMDRRVKPR-QSTERREKEKPPKSQSKMSSSSSKL-KISFDQLDRSRRSVDCH 335 Query: 1469 KSPQQSFDGSRSPRGSI 1485 + ++S D R S+ Sbjct: 336 EKTRKSVDQIERGRKSV 352 >At2g22795.1 68415.m02704 expressed protein Length = 734 Score = 30.7 bits (66), Expect = 8.3 Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 1259 ISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDKEPAGSRSEG 1318 I +E + EE++++ E ++ S + + E +++ +AP E KE + E Sbjct: 547 IEKEEASSQEESKENETETKEKEESSSQEETKEKENEKIEKEESAPQEETKEKENEKIEK 606 Query: 1319 ED 1320 E+ Sbjct: 607 EE 608 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.317 0.131 0.381 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 32,850,279 Number of Sequences: 28952 Number of extensions: 1318129 Number of successful extensions: 4576 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 43 Number of HSP's that attempted gapping in prelim test: 4281 Number of HSP's gapped (non-prelim): 240 length of query: 1598 length of database: 12,070,560 effective HSP length: 91 effective length of query: 1507 effective length of database: 9,435,928 effective search space: 14219943496 effective search space used: 14219943496 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 66 (30.7 bits)
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