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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000379-TA|BGIBMGA000379-PA|IPR013090|Phospholipase A2,
active site, IPR003006|Immunoglobulin/major histocompatibility
complex, IPR001849|Pleckstrin-like, IPR003116|Raf-like Ras-binding,
IPR001478|PDZ/DHR/GLGF, IPR000219|DH
         (1598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    48   4e-05
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    44   6e-04
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    44   8e-04
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    44   8e-04
At1g32120.1 68414.m03952 expressed protein contains Pfam profile...    42   0.003
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    42   0.004
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    42   0.004
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    40   0.018
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    38   0.041
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    37   0.096
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein...    37   0.096
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein...    37   0.096
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC...    36   0.17 
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC...    36   0.17 
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    36   0.22 
At4g36980.1 68417.m05240 expressed protein                             36   0.29 
At5g24880.1 68418.m02946 expressed protein ; expression supporte...    35   0.39 
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    35   0.39 
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR...    35   0.51 
At1g74160.1 68414.m08589 expressed protein                             34   0.67 
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    34   0.89 
At4g37100.1 68417.m05255 hypothetical protein                          34   0.89 
At3g02890.1 68416.m00284 PHD finger protein-related contains low...    34   0.89 
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    34   0.89 
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    34   0.89 
At5g22450.1 68418.m02618 expressed protein                             33   1.2  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    33   1.2  
At3g25840.1 68416.m03219 protein kinase family protein contains ...    33   1.2  
At5g48610.1 68418.m06012 expressed protein ; expression supporte...    33   1.6  
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)...    33   1.6  
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS...    33   2.1  
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS...    33   2.1  
At4g09270.1 68417.m01535 hypothetical protein same aa sequence a...    32   2.7  
At4g09220.1 68417.m01528 hypothetical protein                          32   2.7  
At1g24150.1 68414.m03047 formin homology 2 domain-containing pro...    32   2.7  
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit...    31   4.8  
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit...    31   4.8  
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit...    31   4.8  
At3g57300.1 68416.m06378 transcriptional activator, putative sim...    31   4.8  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    31   4.8  
At5g55660.1 68418.m06940 expressed protein similar to unknown pr...    31   6.3  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    31   6.3  
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu...    31   6.3  
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu...    31   6.3  
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro...    31   6.3  
At3g14880.1 68416.m01881 DNA-binding protein-related low similar...    31   6.3  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    31   6.3  
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    31   6.3  
At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4) cont...    31   6.3  
At5g60150.1 68418.m07540 expressed protein ; expression supporte...    31   8.3  
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    31   8.3  
At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing pr...    31   8.3  
At3g01690.1 68416.m00101 expressed protein                             31   8.3  
At2g22795.1 68415.m02704 expressed protein                             31   8.3  

>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
            similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1
            protein) {Arabidopsis thaliana}
          Length = 300

 Score = 48.4 bits (110), Expect = 4e-05
 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 10/103 (9%)

Query: 1405 SSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGS 1464
            SS +R RSP+RS  R S  R R             S  ++++L RS     D S+SPR S
Sbjct: 200  SSRSRSRSPSRSRSR-SRSRSR-------SRGRGRSHSRSRSLSRSKSPRKDLSKSPRRS 251

Query: 1465 IDKS--KSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKK 1505
            + +S  KS   S D  +SP  ++ +S+  S  RSRSP  +P K
Sbjct: 252  LSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPK 294



 Score = 46.8 bits (106), Expect = 1e-04
 Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 11/108 (10%)

Query: 1426 RVTKVIVCKSPNKS-SLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGS 1484
            RV K    +S ++S S  ++++  RS      +S S   S+ +SKSP++  D S+SPR S
Sbjct: 194  RVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRK--DLSKSPRRS 251

Query: 1485 IMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSKS 1532
            + +S    + +SRSP P  KK    +P  +  RS  +S   SR  SKS
Sbjct: 252  LSRS----ISKSRSPSPDKKK----SPPRAMSRSKSRSRSRSRSPSKS 291



 Score = 45.6 bits (103), Expect = 3e-04
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 1442 KQTKTLHRSP--RGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSP 1499
            K   T  R+P  RG F + +    S  +S+SP +S   SRS   S  + R +S  RS S 
Sbjct: 178  KLDDTEFRNPWARG-FIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSR 236

Query: 1500 KPAPKKGIMRTPQASFDRSPCKSPGASRRSSKSGGEKLARLGTNSLDRA 1548
              +P+K + ++P+ S  RS  KS   S    KS    ++R  + S  R+
Sbjct: 237  SKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRS 285


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
            cyclophilin-type family protein weak similarity to
            CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
            profile PF00160: peptidyl-prolyl cis-trans isomerase,
            cyclophilin-type
          Length = 837

 Score = 44.4 bits (100), Expect = 6e-04
 Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 15/133 (11%)

Query: 1411 RSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTK-TLHRSP----RGSFDQS--RSPRG 1463
            RSP RS  R S  R  + +    +SP++S ++ ++ +L RSP    R S  +S  R  R 
Sbjct: 499  RSPVRSASRGSLGRGPLRRSSR-RSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRR 557

Query: 1464 SIDKS--KSPQQSFDGS--RSPRGSIMKSRENSVDR--SRSPKPAPKKGIMRTPQASFDR 1517
            S+ +S  +SP++S   S  RS R S+ +S   S  R  SRSP  + +K + R+P     R
Sbjct: 558  SLSRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSVSRSPIRLSRR 617

Query: 1518 SPCKSP-GASRRS 1529
            S  +SP   SRRS
Sbjct: 618  SISRSPIRLSRRS 630



 Score = 44.0 bits (99), Expect = 8e-04
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 13/141 (9%)

Query: 1399 IRSCSGSSINRDRSPNRSLDRASPDRD--RVTKVIVCKSPNKSSLKQ-TKTLHRSPRGSF 1455
            +RS S  S+ R   P R   R SP R   R ++  + +SP + S +  +++  R  R S 
Sbjct: 502  VRSASRGSLGR--GPLRRSSRRSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSL 559

Query: 1456 DQS--RSPRGSIDKS--KSPQQSFDGS--RSPRGSIMKS--RENSVDRSRSPKPAPKKGI 1507
             +S  RSPR S+ +S  +S ++S   S  RS R  I +S  R +    SRSP    ++ I
Sbjct: 560  SRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSVSRSPIRLSRRSI 619

Query: 1508 MRTPQASFDRSPCKSPGASRR 1528
             R+P     RS  +SP   RR
Sbjct: 620  SRSPIRLSRRSISRSPVRGRR 640



 Score = 43.6 bits (98), Expect = 0.001
 Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 15/149 (10%)

Query: 1411 RSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTK---TLHRSPRGSFDQS--RSPRGSI 1465
            RSP R + R SP R R+ +    +SP +S+ + +     L RS R S  +S  RS R S+
Sbjct: 478  RSPKRVISR-SPVRGRIARS-PSRSPVRSASRGSLGRGPLRRSSRRSPSRSPVRSSRRSL 535

Query: 1466 DKSKSPQQSFDGSRSP----RGSIMKSRENSVDRS--RSPKPAPKKGIMRTPQASFDRSP 1519
             +S         SRSP    R S+ +S   S  +S  RSP  + +K + R+P  S  R  
Sbjct: 536  SRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRI 595

Query: 1520 CKSPGASRRSSKSGGEKLARLGTNSLDRA 1548
             +SP   R S KS      RL   S+ R+
Sbjct: 596  SRSP--VRSSRKSVSRSPIRLSRRSISRS 622



 Score = 40.7 bits (91), Expect = 0.008
 Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 1408 NRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDK 1467
            NR    N   D AS         IV   P+KS   ++++L      S   S SPR S  K
Sbjct: 346  NRGLRSNGISDAASEQISDRQPDIVDDHPSKS---RSRSLSPKRTVSKSTSVSPRRSQSK 402

Query: 1468 SKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK-KGIMRTPQASFDRSPCKSPGAS 1526
            S S    ++G RSP     + +  +  R  SP    K + + R+P  S  RSP +     
Sbjct: 403  SPSSSPRWNGGRSPAKGSRQVKNLTNSRRESPGSEEKGRHVRRSPTKSVSRSPVRVK-KE 461

Query: 1527 RRSSKSGGEKLAR 1539
            R  S+S  + L+R
Sbjct: 462  RDISRSPSKSLSR 474



 Score = 38.7 bits (86), Expect = 0.031
 Identities = 44/124 (35%), Positives = 58/124 (46%), Gaps = 20/124 (16%)

Query: 1434 KSPNKSSLKQTKTLHRSPR---GSFDQSRSPRGSIDKS--KSP---QQSFDGSRSPRGSI 1485
            +SP K S +Q K L  S R   GS ++ R  R S  KS  +SP   ++  D SRSP  S+
Sbjct: 414  RSPAKGS-RQVKNLTNSRRESPGSEEKGRHVRRSPTKSVSRSPVRVKKERDISRSPSKSL 472

Query: 1486 MKSRENSVDRSRSPKPAPKKGIMRTP-QASFDRSPCKSPGASRRSSKSGGEKLARLGTNS 1544
                      SRSP  +PK+ I R+P +    RSP +SP  S      G   L R    S
Sbjct: 473  ----------SRSPLRSPKRVISRSPVRGRIARSPSRSPVRSASRGSLGRGPLRRSSRRS 522

Query: 1545 LDRA 1548
              R+
Sbjct: 523  PSRS 526



 Score = 35.9 bits (79), Expect = 0.22
 Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 15/142 (10%)

Query: 1405 SSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLK-QTKTLHR------SPRGSFDQ 1457
            +S + DRSP R  DR+  DR R ++     S  +S L+ +T   +R      SP   +  
Sbjct: 695  TSPSPDRSPYRFSDRSDRDRFR-SRRRFSPSRFRSPLRGRTPPRYRRRSRSVSPGLCYRN 753

Query: 1458 SRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKP---APKKGIMRTPQAS 1514
             R  R  I +S+SP      S S   S+  SR  S  +S S  P      + + R+P  +
Sbjct: 754  RRYSRSPI-RSRSPPYRKRRSPSASHSLSPSRSRSRSKSYSKSPIGTGKARSVSRSPSKA 812

Query: 1515 FDRSPCKSPGASRRSSKSGGEK 1536
              RSP KS   S  +S  GG+K
Sbjct: 813  --RSPSKSDSTSSDNS-PGGKK 831



 Score = 31.1 bits (67), Expect = 6.3
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1442 KQTKTLHRSPRGSFD--QSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSP 1499
            K+ ++LH+  R   D  ++R  R +     + +Q  D  R P   +      S  RS SP
Sbjct: 328  KEAESLHQGKRKGPDLLENRGLRSNGISDAASEQISD--RQP-DIVDDHPSKSRSRSLSP 384

Query: 1500 KPAPKKGIMRTPQASFDRSPCKSPGASRRSSKSGGEKLARLGTNS 1544
            K    K    +P+ S  +SP  SP  +   S + G +  +  TNS
Sbjct: 385  KRTVSKSTSVSPRRSQSKSPSSSPRWNGGRSPAKGSRQVKNLTNS 429


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
            (SR45) similar to arginine/serine-rich protein GI:6601502
            from [Arabidopsis thaliana]
          Length = 407

 Score = 44.0 bits (99), Expect = 8e-04
 Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 1420 ASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFD-GS 1478
            A P R R +  +   S   SS  ++ +   SP  S  +SRS   S+  S SP +S   GS
Sbjct: 2    AKPSRGRRSPSVSGSSSRSSSRSRSGS---SPSRSISRSRSRSRSLSSSSSPSRSVSSGS 58

Query: 1479 RSP--RGSIMKSRENSVDRSRSPKPAPKKG 1506
            RSP  RG   KS      R RSP P P KG
Sbjct: 59   RSPPRRG---KSPAGPARRGRSPPPPPSKG 85



 Score = 39.9 bits (89), Expect = 0.014
 Identities = 38/111 (34%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 1449 RSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIM 1508
            RSP  S   SRS   S   S SP +S   SRS   S+  S   S   S   +  P++G  
Sbjct: 9    RSPSVSGSSSRSSSRSRSGS-SPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRGKS 67

Query: 1509 RTPQASFDRSPCKSP--GASRRSSKSGGEKLARLGTNSLDRATHYSQLAKV 1557
                A   RSP   P  GAS  S K+  E L  L  +SL R  + + L ++
Sbjct: 68   PAGPARRGRSPPPPPSKGASSPSKKAVQESLV-LHVDSLSRNVNEAHLKEI 117



 Score = 37.1 bits (82), Expect = 0.096
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 1257 GNISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDKEPAGSRS 1316
            G+ SR +S+    +  S      R RS+++     +  + V+S + +P    K PAG   
Sbjct: 15   GSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSS-SSPSRSVSSGSRSPPRRGKSPAGPAR 73

Query: 1317 EGEDEPPPP 1325
             G   PPPP
Sbjct: 74   RGRSPPPPP 82



 Score = 33.1 bits (72), Expect = 1.6
 Identities = 42/142 (29%), Positives = 55/142 (38%), Gaps = 12/142 (8%)

Query: 1403 SGSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSP---RGSFDQSR 1459
            + +   +D  P R  +R SP R             +S     +    SP   RG     R
Sbjct: 202  AAADAEKDGGPRRPRERLSPRRRSPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRR 261

Query: 1460 SP----RGSIDKSKSPQQSFDGSR-SPR---GSIMKSRENSVDRSRSPKPAPKKGI-MRT 1510
             P    RG    S  P++     R SPR   GS ++ R     R RSP P   +    R+
Sbjct: 262  RPASPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRS 321

Query: 1511 PQASFDRSPCKSPGASRRSSKS 1532
            P     RSP + PG SR SS S
Sbjct: 322  PIRRRSRSPIRRPGRSRSSSIS 343



 Score = 33.1 bits (72), Expect = 1.6
 Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 17/136 (12%)

Query: 1400 RSCSGSSINRDRSPNRSLDR---ASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFD 1456
            RS S     R RSP R   R    SP R R    +  +SP    L+      RSP     
Sbjct: 270  RSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPP--RRSPIRR-- 325

Query: 1457 QSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFD 1516
            +SRSP     +S+S   S    R P G   + R +S   S SP+  P+K        S  
Sbjct: 326  RSRSPIRRPGRSRSSSISPRKGRGPAGR--RGRSSSYSSSPSPRRIPRK-------ISRS 376

Query: 1517 RSPCKSPGASRRSSKS 1532
            RSP K P   +RSS +
Sbjct: 377  RSP-KRPLRGKRSSSN 391


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
            (SR45) similar to arginine/serine-rich protein GI:6601502
            from [Arabidopsis thaliana]
          Length = 414

 Score = 44.0 bits (99), Expect = 8e-04
 Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 1420 ASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFD-GS 1478
            A P R R +  +   S   SS  ++ +   SP  S  +SRS   S+  S SP +S   GS
Sbjct: 2    AKPSRGRRSPSVSGSSSRSSSRSRSGS---SPSRSISRSRSRSRSLSSSSSPSRSVSSGS 58

Query: 1479 RSP--RGSIMKSRENSVDRSRSPKPAPKKG 1506
            RSP  RG   KS      R RSP P P KG
Sbjct: 59   RSPPRRG---KSPAGPARRGRSPPPPPSKG 85



 Score = 39.9 bits (89), Expect = 0.014
 Identities = 38/111 (34%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 1449 RSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIM 1508
            RSP  S   SRS   S   S SP +S   SRS   S+  S   S   S   +  P++G  
Sbjct: 9    RSPSVSGSSSRSSSRSRSGS-SPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRGKS 67

Query: 1509 RTPQASFDRSPCKSP--GASRRSSKSGGEKLARLGTNSLDRATHYSQLAKV 1557
                A   RSP   P  GAS  S K+  E L  L  +SL R  + + L ++
Sbjct: 68   PAGPARRGRSPPPPPSKGASSPSKKAVQESLV-LHVDSLSRNVNEAHLKEI 117



 Score = 37.1 bits (82), Expect = 0.096
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 1257 GNISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDKEPAGSRS 1316
            G+ SR +S+    +  S      R RS+++     +  + V+S + +P    K PAG   
Sbjct: 15   GSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSS-SSPSRSVSSGSRSPPRRGKSPAGPAR 73

Query: 1317 EGEDEPPPP 1325
             G   PPPP
Sbjct: 74   RGRSPPPPP 82



 Score = 33.1 bits (72), Expect = 1.6
 Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 17/136 (12%)

Query: 1400 RSCSGSSINRDRSPNRSLDR---ASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFD 1456
            RS S     R RSP R   R    SP R R    +  +SP    L+      RSP     
Sbjct: 277  RSPSSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPP--RRSPIRR-- 332

Query: 1457 QSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFD 1516
            +SRSP     +S+S   S    R P G   + R +S   S SP+  P+K        S  
Sbjct: 333  RSRSPIRRPGRSRSSSISPRKGRGPAGR--RGRSSSYSSSPSPRRIPRK-------ISRS 383

Query: 1517 RSPCKSPGASRRSSKS 1532
            RSP K P   +RSS +
Sbjct: 384  RSP-KRPLRGKRSSSN 398



 Score = 32.7 bits (71), Expect = 2.1
 Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 1434 KSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKS-KSPQQSFDGSRSPRGSIMKSRENS 1492
            + P     ++  T  R    S  + RSP     +  +SP +     R  RGS ++ R   
Sbjct: 252  RRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRG--SPRRIRGSPVRRRSPL 309

Query: 1493 VDRSRSPKPAPKKGI-MRTPQASFDRSPCKSPGASRRSSKS 1532
              R RSP P   +    R+P     RSP + PG SR SS S
Sbjct: 310  PLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSSSIS 350


>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
            PF04819: Family of unknown function (DUF716) (Plant
            viral-response family)
          Length = 1206

 Score = 41.9 bits (94), Expect = 0.003
 Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 11/178 (6%)

Query: 1411 RSPN--RSLDRASPDRDRVTKV-IVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDK 1467
            RSP    S  + +P   RV+K   +  S + SS    K   RS   +  +  +   S+  
Sbjct: 753  RSPEAINSRGQKNPPSPRVSKEPYMSSSLSVSSSSTRKKPPRSHEAANSRGYNHTPSLRA 812

Query: 1468 SKSPQQS--FDGSRSPRGSIMKSRENSVDRSRSPKPAPK--KGIMRTPQASFDRSPC--K 1521
            SK P +S    GS S R    +S E S  R  +  P+P+  K + +TP  S   S    K
Sbjct: 813  SKEPYKSSSLSGSSSTRKKPPRSHEASSSRGYNHPPSPRVSKELNKTPSISGSPSATRNK 872

Query: 1522 SPGASRRSSKSGGEKLARLGTNSLDRATHYSQLAKVEDKAMKMGIVVSKSTESIAKAI 1579
            SP +S   +  G       G + + R T  S +   ++  +K  + +SK+ + + + +
Sbjct: 873  SPRSSENVNSCGNSSSG--GNSVVKRNTDTSIIVSKQESPIKTQLDISKANKLLEEVV 928


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
            protein identical to SP|O22315 Pre-mRNA splicing factor
            SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 41.5 bits (93), Expect = 0.004
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 1434 KSPNKS-SLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRG-SIMKSREN 1491
            +S +KS S  + +++ RS   S  +SRSP+    + +SP +S   S  PR  S   S   
Sbjct: 208  RSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSR-RSPAKSTSRSPGPRSKSRSPSPRR 266

Query: 1492 SVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSK 1531
            S  RSRSP P+ +K   ++P      SP KSP  +R  S+
Sbjct: 267  SRSRSRSPLPSVQKEGSKSPSKP---SPAKSPIHTRSPSR 303



 Score = 39.1 bits (87), Expect = 0.024
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1404 GSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRG 1463
            G S++R RS +RS  R SP + + ++    KS ++S   ++K+   SPR S  +SRSP  
Sbjct: 219  GRSVSRSRSRSRSRSR-SP-KAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLP 276

Query: 1464 SIDK--SKSPQQ 1473
            S+ K  SKSP +
Sbjct: 277  SVQKEGSKSPSK 288



 Score = 37.9 bits (84), Expect = 0.055
 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 1449 RSP-RG-SFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK-K 1505
            RSP RG S+ +SRS       S+S  +S   SRSP+    KS   S  +S S  P P+ K
Sbjct: 202  RSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKA---KSSRRSPAKSTSRSPGPRSK 258

Query: 1506 GIMRTPQASFDRSPCKSPGASRRSSKS 1532
                +P+ S  RS    P   +  SKS
Sbjct: 259  SRSPSPRRSRSRSRSPLPSVQKEGSKS 285



 Score = 37.1 bits (82), Expect = 0.096
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 10/86 (11%)

Query: 1467 KSKSPQQSFDGSRS-PRG-SIMKSRENSVDRSRSPKP-----APKKGIMRTP-QASFDRS 1518
            +S S  +S+  SRS  RG S+ +SR  S  RSRSPK      +P K   R+P   S  RS
Sbjct: 202  RSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRS 261

Query: 1519 PCKSPGASRRSSKSGGEKLARLGTNS 1544
            P  SP  SR  S+S    + + G+ S
Sbjct: 262  P--SPRRSRSRSRSPLPSVQKEGSKS 285



 Score = 33.1 bits (72), Expect = 1.6
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 1468 SKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK-KGIMRTPQASFDRSP---CKSP 1523
            S+SP +    S+S   S  +S   S  RSRS   +PK K   R+P  S  RSP    KS 
Sbjct: 201  SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR 260

Query: 1524 GASRRSSKS 1532
              S R S+S
Sbjct: 261  SPSPRRSRS 269


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
            protein identical to SP|O22315 Pre-mRNA splicing factor
            SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 41.5 bits (93), Expect = 0.004
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 1434 KSPNKS-SLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRG-SIMKSREN 1491
            +S +KS S  + +++ RS   S  +SRSP+    + +SP +S   S  PR  S   S   
Sbjct: 208  RSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSR-RSPAKSTSRSPGPRSKSRSPSPRR 266

Query: 1492 SVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSK 1531
            S  RSRSP P+ +K   ++P      SP KSP  +R  S+
Sbjct: 267  SRSRSRSPLPSVQKEGSKSPSKP---SPAKSPIHTRSPSR 303



 Score = 39.1 bits (87), Expect = 0.024
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1404 GSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRG 1463
            G S++R RS +RS  R SP + + ++    KS ++S   ++K+   SPR S  +SRSP  
Sbjct: 219  GRSVSRSRSRSRSRSR-SP-KAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLP 276

Query: 1464 SIDK--SKSPQQ 1473
            S+ K  SKSP +
Sbjct: 277  SVQKEGSKSPSK 288



 Score = 37.9 bits (84), Expect = 0.055
 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 1449 RSP-RG-SFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK-K 1505
            RSP RG S+ +SRS       S+S  +S   SRSP+    KS   S  +S S  P P+ K
Sbjct: 202  RSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKA---KSSRRSPAKSTSRSPGPRSK 258

Query: 1506 GIMRTPQASFDRSPCKSPGASRRSSKS 1532
                +P+ S  RS    P   +  SKS
Sbjct: 259  SRSPSPRRSRSRSRSPLPSVQKEGSKS 285



 Score = 37.1 bits (82), Expect = 0.096
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 10/86 (11%)

Query: 1467 KSKSPQQSFDGSRS-PRG-SIMKSRENSVDRSRSPKP-----APKKGIMRTP-QASFDRS 1518
            +S S  +S+  SRS  RG S+ +SR  S  RSRSPK      +P K   R+P   S  RS
Sbjct: 202  RSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRS 261

Query: 1519 PCKSPGASRRSSKSGGEKLARLGTNS 1544
            P  SP  SR  S+S    + + G+ S
Sbjct: 262  P--SPRRSRSRSRSPLPSVQKEGSKS 285



 Score = 33.1 bits (72), Expect = 1.6
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 1468 SKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK-KGIMRTPQASFDRSP---CKSP 1523
            S+SP +    S+S   S  +S   S  RSRS   +PK K   R+P  S  RSP    KS 
Sbjct: 201  SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR 260

Query: 1524 GASRRSSKS 1532
              S R S+S
Sbjct: 261  SPSPRRSRS 269


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
            protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 39.5 bits (88), Expect = 0.018
 Identities = 39/140 (27%), Positives = 52/140 (37%), Gaps = 1/140 (0%)

Query: 1400 RSCSGSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459
            RS S S I R R P     R SP   R  +     +  + S        RSP     + R
Sbjct: 282  RSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHR 341

Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSP 1519
            SP     + +SP       RSP  +  + R  S    R   P+P     R+P   + R+ 
Sbjct: 342  SPTPPARQRRSPSPPARRHRSPPPA-RRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNR 400

Query: 1520 CKSPGASRRSSKSGGEKLAR 1539
              SP   R  S+S   K  R
Sbjct: 401  SPSPLYRRNRSRSPLAKRGR 420



 Score = 35.5 bits (78), Expect = 0.29
 Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 1406 SINRDRSPNRSLDRA-SPDRDRVTKVIVCKS--PNKSSLKQTKTLHRSPRGSFDQSRSPR 1462
            S +R RS +RS+ R+ SP R R+      +S  P +   + T    R       + RSP 
Sbjct: 255  SNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPS 314

Query: 1463 GSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRT-PQASFDRSPCK 1521
                + +SP       RSP     + R  +    +   P+P     R+ P A   RSP  
Sbjct: 315  PPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPARRHRSPPPARRRRSP-- 372

Query: 1522 SPGASRRSSKS 1532
            SP A RR S S
Sbjct: 373  SPPARRRRSPS 383



 Score = 33.9 bits (74), Expect = 0.89
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 3/116 (2%)

Query: 1408 NRDRSPN-RSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSID 1466
            +RDR  + R  D  +  ++R   +I  +  + S      +  RS   +   S+S  G   
Sbjct: 176  SRDRPEDGRRADEKNGVKERRRDLIPPRRGDASRSPLRGSRSRSISKTNSGSKSYSGE-R 234

Query: 1467 KSKSPQQSFDGSRSPRGS-IMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCK 1521
            KS+S  QS D S SPR   +  SR  S  RS     +P++  + +P  S  RSP +
Sbjct: 235  KSRSTSQSSDASISPRKRRLSNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIR 290



 Score = 32.3 bits (70), Expect = 2.7
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 1413 PNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQ 1472
            P R     +PD +RV+     +  + S +KQ  ++  SP     +S SP     K++SP 
Sbjct: 525  PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSM--SPVRGRGKS-SPSSRHQKARSPV 581

Query: 1473 QSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSKS 1532
            +     RSP     +SR     RS S   +P +   R+P +S   S  +SP    RS   
Sbjct: 582  RR----RSPTPVNRRSR-----RSSSASRSPDRRRRRSPSSSRSPSRSRSPPVLHRSPSP 632

Query: 1533 GGEKLAR 1539
             G K  R
Sbjct: 633  RGRKHQR 639



 Score = 30.7 bits (66), Expect = 8.3
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 1449 RSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENS--VDRSRSPKPAPKKG 1506
            RSP     + RSP  +  + +SP       RSP     + R  S    R+RSP P  ++ 
Sbjct: 351  RSPSPPARRHRSPPPA-RRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRN 409

Query: 1507 IMRTPQASFDRSPCKSPGAS 1526
              R+P A   RS   SPG S
Sbjct: 410  RSRSPLAKRGRSD--SPGRS 427


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
            almost identical to SC35-like splicing factor SCL30a
            GI:9843661 from [Arabidopsis thaliana]; contains Pfam
            profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD,
            or RNP domain)
          Length = 262

 Score = 38.3 bits (85), Expect = 0.041
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 1411 RSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKS 1470
            RSP     R S  R R       K     S+      +   R S+ +S    GS  +S S
Sbjct: 147  RSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSPQDRRYEKER-SYSRSPPHNGSRVRSGS 205

Query: 1471 PQQSFDGSRSPRGSIM--KSRENSVDRSRSPKPAPKKGIMRTP----QASFDRSP 1519
            P +    SRSPR S+   K+R  + +++RS  P P++    TP      + DRSP
Sbjct: 206  PGRVKSHSRSPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPVPRGAQNGDRSP 260


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
            nearly identical to SC35-like splicing factor SCL30, 30
            kD [Arabidopsis thaliana] GI:9843657;
            Serine/arginine-rich protein/putative splicing factor,
            Arabidopdis thaliana, EMBL:AF099940; contains Pfam
            profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD,
            or RNP domain)
          Length = 262

 Score = 37.1 bits (82), Expect = 0.096
 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 13/93 (13%)

Query: 1415 RSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKS--KSPQ 1472
            RS++R S     +T V+  +S  +    + KT  RS        R P GS D+S  +S  
Sbjct: 106  RSMNRRSFAGREITVVVASESRKRPEEMRVKTRTRS--------REPSGSRDRSHGRSRS 157

Query: 1473 QSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKK 1505
            +S   SRSPR     S   S  RSRS  PAP++
Sbjct: 158  RSISRSRSPR---RPSDSRSRYRSRSYSPAPRR 187


>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
            contains Pfam domain PF00098: Zinc knuckle
          Length = 284

 Score = 37.1 bits (82), Expect = 0.096
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 1404 GSSINRDRSPNRSLDRASPDRDRVTKV----IVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459
            G S +R RSP R  +++  DR R  K     +  K  ++S     K +  SP+   D   
Sbjct: 176  GRSYSRSRSPVRR-EKSVEDRSRSPKAMERSVSPKGRDQSLSPDRKVIDASPKRGSDYDG 234

Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK 1504
            SP+ + +   S      G  SP G   + R    D +   +P+PK
Sbjct: 235  SPKENGNGRNSASPIVGGGESPVGLNGQDRSPIDDEAELSRPSPK 279



 Score = 34.7 bits (76), Expect = 0.51
 Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 1433 CK-SPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSREN 1491
            CK SP+    +Q  +  RSP  S    R    S  +S S  +S+  SRSP       RE 
Sbjct: 136  CKNSPSPKKARQGGSYSRSPVKSRSPRRRRSPSRSRSYSRGRSYSRSRSP-----VRREK 190

Query: 1492 SV-DRSRSPK 1500
            SV DRSRSPK
Sbjct: 191  SVEDRSRSPK 200


>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
            contains Pfam domain PF00098: Zinc knuckle
          Length = 243

 Score = 37.1 bits (82), Expect = 0.096
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 1404 GSSINRDRSPNRSLDRASPDRDRVTKV----IVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459
            G S +R RSP R  +++  DR R  K     +  K  ++S     K +  SP+   D   
Sbjct: 135  GRSYSRSRSPVRR-EKSVEDRSRSPKAMERSVSPKGRDQSLSPDRKVIDASPKRGSDYDG 193

Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPK 1504
            SP+ + +   S      G  SP G   + R    D +   +P+PK
Sbjct: 194  SPKENGNGRNSASPIVGGGESPVGLNGQDRSPIDDEAELSRPSPK 238



 Score = 34.7 bits (76), Expect = 0.51
 Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 1433 CK-SPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSREN 1491
            CK SP+    +Q  +  RSP  S    R    S  +S S  +S+  SRSP       RE 
Sbjct: 95   CKNSPSPKKARQGGSYSRSPVKSRSPRRRRSPSRSRSYSRGRSYSRSRSP-----VRREK 149

Query: 1492 SV-DRSRSPK 1500
            SV DRSRSPK
Sbjct: 150  SVEDRSRSPK 159


>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
            contains similarity to splicing factor; contains Pfam
            profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD,
            or RNP domain)
          Length = 303

 Score = 36.3 bits (80), Expect = 0.17
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 1449 RSPRGSFDQSRSPRGSID-KSKSPQQSFDGS---RSPRGSIMK----SRENSVD-RSRSP 1499
            RS   S D+ R  RG  D +S+S  +S   S   RSPR S  +    +RE S D RS   
Sbjct: 185  RSRSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNER 244

Query: 1500 KPAPKKGIMRTPQASFDRSPCKSPGASRRSSK 1531
             P+P++ +     A    SP K     RRS++
Sbjct: 245  SPSPRRSLSPRSPALQKASPSKEMSPERRSNE 276


>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
            contains similarity to splicing factor; contains Pfam
            profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD,
            or RNP domain)
          Length = 303

 Score = 36.3 bits (80), Expect = 0.17
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 1449 RSPRGSFDQSRSPRGSID-KSKSPQQSFDGS---RSPRGSIMK----SRENSVD-RSRSP 1499
            RS   S D+ R  RG  D +S+S  +S   S   RSPR S  +    +RE S D RS   
Sbjct: 185  RSRSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNER 244

Query: 1500 KPAPKKGIMRTPQASFDRSPCKSPGASRRSSK 1531
             P+P++ +     A    SP K     RRS++
Sbjct: 245  SPSPRRSLSPRSPALQKASPSKEMSPERRSNE 276


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
            protein, putative strong similarity to SP|O22315 Pre-mRNA
            splicing factor SF2 (SR1 protein) {Arabidopsis thaliana};
            cDNA NCBI_gi:15810292 supports a truncated version while
            protein evidence supports a longer model.
          Length = 278

 Score = 35.9 bits (79), Expect = 0.22
 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 1455 FDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQAS 1514
            +D  R  R S  + +S  +S    RSP  S  +SR  S  +SRSPK    K + R+P  S
Sbjct: 193  YDSRRDSR-SPSRGRSYSKSRSRGRSPSRS--RSRSRSRSKSRSPK---AKSLRRSPAKS 246

Query: 1515 FDRSP-CKSPGASRRSSKSG 1533
              RSP  +S   SR  S  G
Sbjct: 247  TSRSPRSRSRSKSRSLSPRG 266



 Score = 31.9 bits (69), Expect = 3.6
 Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 14/85 (16%)

Query: 1406 SINRDRSPNRSLDRA-SPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGS 1464
            S +R RS ++S  R  SP R R       +S +KS   + K+L RSP  S   SRSPR S
Sbjct: 201  SPSRGRSYSKSRSRGRSPSRSRSRS----RSRSKSRSPKAKSLRRSPAKS--TSRSPR-S 253

Query: 1465 IDKSKSPQQSFDGSRSPRGSIMKSR 1489
              +SKS       S SPRG +   R
Sbjct: 254  RSRSKSR------SLSPRGWVTVER 272



 Score = 31.1 bits (67), Expect = 6.3
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 1449 RSP-RG-SFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPK 1500
            RSP RG S+ +SRS   S  +S+S  +S   SRSP+   ++ R  +   SRSP+
Sbjct: 200  RSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKAKSLR-RSPAKSTSRSPR 252


>At4g36980.1 68417.m05240 expressed protein
          Length = 560

 Score = 35.5 bits (78), Expect = 0.29
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 1426 RVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQ-SRSPRGSIDKSKSPQQSFDGSRSPRGS 1484
            R+    + K   K S  +T       R   ++ + + R S ++ +S  +S   S  PR  
Sbjct: 439  RIMNKQLTKQIKKDSATETAKKREQERQRLEKLAETSRLSRNRQRSRSRSISRSPPPRRH 498

Query: 1485 IMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSKSGGEKLARLGT 1542
              +SR  S  RSR  +    +   R+P  S  RSP +   A        GE+ A  GT
Sbjct: 499  -RRSRSRSGSRSRRSRRHSSRSRSRSPSRSLSRSPKRHADALHLIRGLPGEEAAGQGT 555


>At5g24880.1 68418.m02946 expressed protein ; expression supported by
            MPSS
          Length = 443

 Score = 35.1 bits (77), Expect = 0.39
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 1436 PNKSSLKQTKTLHRSPRGSFDQSRSPRGSID-KSKSPQQSF----DGSRSPRGSIMKSRE 1490
            P+  +L +TK+L R P+     + S  GS D K + P  ++      SR   G ++K   
Sbjct: 12   PDNQNLSRTKSLGRKPKQPLSTASSEDGSSDQKPEKPLPNYLKPTISSRPDAGKLLKKNN 71

Query: 1491 NSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSP 1523
            NS+D ++  K   ++   R P +    S   SP
Sbjct: 72   NSLDDNQ--KLLRRRSFDRPPSSLTSPSTSASP 102


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
            RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF00397:
            WW domain
          Length = 1088

 Score = 35.1 bits (77), Expect = 0.39
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 1449 RSPRGSFDQSRSPRGSIDKSKSPQQSF--DGSRSPRGSIMKSREN-SVDRSRSPKPAPKK 1505
            R    S+ +SRS  GS  +S+S  +S+    SRSPR S  +   N S   SRSP P  ++
Sbjct: 965  RRRSSSYSRSRSRSGSYSRSRSRSRSWSRSRSRSPRHSRDRGGHNRSRSYSRSPSPVYER 1024

Query: 1506 GIMRTPQAS-FDRSP 1519
               R P+ S FD  P
Sbjct: 1025 R-DRAPRVSGFDIKP 1038



 Score = 30.7 bits (66), Expect = 8.3
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 1457 QSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSREN----SVDRSRSPKPAPKKGIMRTPQ 1512
            +SRS    + + +    S+  SRS  GS  +SR      S  RSRSP+ +  +G      
Sbjct: 953  RSRSRSPDLVRPRRRSSSYSRSRSRSGSYSRSRSRSRSWSRSRSRSPRHSRDRG-GHNRS 1011

Query: 1513 ASFDRSPCKSPGASRR 1528
             S+ RSP  SP   RR
Sbjct: 1012 RSYSRSP--SPVYERR 1025


>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
            protein identical to SP|O22315 Pre-mRNA splicing factor
            SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 285

 Score = 34.7 bits (76), Expect = 0.51
 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 1467 KSKSPQQSFDGSRS-PRG-SIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPG 1524
            +S S  +S+  SRS  RG S+ +SR  S  RSRSPK    K   R+P  S  RSP   P 
Sbjct: 202  RSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPK---AKSSRRSPAKSTSRSP--GPR 256

Query: 1525 ASRRS 1529
            +  RS
Sbjct: 257  SKSRS 261


>At1g74160.1 68414.m08589 expressed protein
          Length = 1030

 Score = 34.3 bits (75), Expect = 0.67
 Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 16/193 (8%)

Query: 1415 RSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQ- 1473
            + + R  PD D+ T     K   K      +    S   SFD+    R     SK PQQ 
Sbjct: 518  KKIRREKPD-DKGTSASNSKRVTKDCSPGNRRAE-SCTSSFDKKSDSRNVRSSSKKPQQV 575

Query: 1474 SFDGSRSPRGSI---MKSRENSVD-RSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRS 1529
            S + +    GS+   ++ ++   D RSR P P P     R P ++       SPG  RR 
Sbjct: 576  SKESASKSSGSVSPRLQQKKLEYDKRSRPPTP-PDSSKSRKP-SNQQLVESTSPGGRRRP 633

Query: 1530 SKSGGEKLARLGTNSLDRATHYSQLAK---VEDKAMKMGIVVSKSTESI-AKAIEHTTCV 1585
                G+K  +   + L +A++ S+ +          +    V KSTE+   K+       
Sbjct: 634  K---GQKSLQQVDDQLSQASNESRTSSHGICTQSETEASACVEKSTEADGGKSPSVIEAA 690

Query: 1586 QCYLSGKRQSKSS 1598
            +  +S   Q+KSS
Sbjct: 691  KAVVSNLMQNKSS 703


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
            pectinesterase (EC 3.1.1.11) from Salix gilgiana
            GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
            vulgaris SP|Q43111; contains Pfam profile PF01095
            pectinesterase
          Length = 732

 Score = 33.9 bits (74), Expect = 0.89
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 1458 SRSPRGSIDKSKSPQQSFDGSRS--PRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASF 1515
            S +P   +  S SP     GS S  P   +  S   S   S SP  +P      +P AS 
Sbjct: 652  SDTPSSLVSPSTSPPAGHLGSPSDTPSSVVTPSASPSTSPSASPSVSPSAFPSASPSASP 711

Query: 1516 DRSPCKSPGASRRSS 1530
              SP  SP AS  +S
Sbjct: 712  SASPSVSPSASPSAS 726


>At4g37100.1 68417.m05255 hypothetical protein
          Length = 896

 Score = 33.9 bits (74), Expect = 0.89
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 1418 DRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDG 1477
            D  S DRD  T   + +     S+ +   L +SP  S D+S      ID  +SP  S   
Sbjct: 464  DNISSDRDGTTSTTIFEETESVSVGE---LMKSPVFSEDESSDNSFWIDLGQSPLGSDQH 520

Query: 1478 SR--SPRGSIMKSRENSVDRSRSPKPAPK 1504
            ++  SP   I  + +    + +SPKP PK
Sbjct: 521  NKIASPLPPIWLTNKRKQKQRQSPKPIPK 549


>At3g02890.1 68416.m00284 PHD finger protein-related contains low
            similarity to PHD-finger domain proteins
          Length = 963

 Score = 33.9 bits (74), Expect = 0.89
 Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 13/206 (6%)

Query: 1406 SINRDRSPNRSLDR--ASPDRDRVTKVIVCKSPNKSSLKQTKTLHR--SPRGSFDQSRS- 1460
            ++N   S  R +D+  A PD  R+       SP +S L +  TL R  S +G    +R  
Sbjct: 272  NVNTQISSKRHIDKFEAVPDSKRLAVGAQIGSPKRSVLPRMSTLSRETSFKGLEKPTRKL 331

Query: 1461 ------PRGSIDKSKSPQQSFDGSRSPRGSIMKSRE-NSVDRSRSPKPAPKKGIMRTPQA 1513
                     S D ++S + +    +SP+GS +KS   NS+      +P     + R    
Sbjct: 332  AHYSSFNSHSSDDTESTRSTDSQLQSPKGSFLKSNSFNSLSSRSKVRPVDDDMLPRQKTG 391

Query: 1514 SFDRSPCKSPGASRRSSKSGGEKLARLG-TNSLDRATHYSQLAKVEDKAMKMGIVVSKST 1572
            + + S     G S+   KS   +   +G +N  D     S+  K           +S+  
Sbjct: 392  NENSSLEVKEGFSKNVGKSMSSRCIDVGSSNCNDSKVKGSKQLKDWSTEANPSASISRGN 451

Query: 1573 ESIAKAIEHTTCVQCYLSGKRQSKSS 1598
             SI  A            GK+   SS
Sbjct: 452  SSIPYAKSPRDLKDLQSDGKQVGDSS 477


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar to
            SF16 protein [Helianthus annuus] GI:560150; contains Pfam
            profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 33.9 bits (74), Expect = 0.89
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 1422 PDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSP 1481
            P  DR         P  +S +       SPR +  +  SPR  + ++ SP+     +  P
Sbjct: 80   PTPDRPNPYSASPPPRPASPRVASPRPTSPRVASPRVPSPRAEVPRTLSPKPPSPRAEVP 139

Query: 1482 RGSIMK--SRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSK 1531
            R    K  S    + RS SPKP  +    +   AS +  P   P ++R  S+
Sbjct: 140  RSLSPKPPSPRADLPRSLSPKPFDRS---KPSSASANAPPTLRPASTRVPSQ 188



 Score = 31.9 bits (69), Expect = 3.6
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 8/130 (6%)

Query: 1405 SSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHR--SPRGSFDQSRSPR 1462
            + + R  SP +  DR+ P           +  +     Q  T H   SPR S  +  SP+
Sbjct: 151  ADLPRSLSP-KPFDRSKPSSASANAPPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQ 209

Query: 1463 GSIDKSKSPQ---QSFDGSR--SPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDR 1517
                K  SP+    + D  R  SPR + +++    +D +R   P P   +   P+    R
Sbjct: 210  AISSKPPSPRAEPPTLDTPRPPSPRAASLRADPPRLDAARPTTPRPPSPLADAPRLDAPR 269

Query: 1518 SPCKSPGASR 1527
                 P + R
Sbjct: 270  PTTPKPPSPR 279


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar to
            SF16 protein [Helianthus annuus] GI:560150; contains Pfam
            profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 33.9 bits (74), Expect = 0.89
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 1422 PDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSP 1481
            P  DR         P  +S +       SPR +  +  SPR  + ++ SP+     +  P
Sbjct: 79   PTPDRPNPYSASPPPRPASPRVASPRPTSPRVASPRVPSPRAEVPRTLSPKPPSPRAEVP 138

Query: 1482 RGSIMK--SRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSK 1531
            R    K  S    + RS SPKP  +    +   AS +  P   P ++R  S+
Sbjct: 139  RSLSPKPPSPRADLPRSLSPKPFDRS---KPSSASANAPPTLRPASTRVPSQ 187



 Score = 31.9 bits (69), Expect = 3.6
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 8/130 (6%)

Query: 1405 SSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHR--SPRGSFDQSRSPR 1462
            + + R  SP +  DR+ P           +  +     Q  T H   SPR S  +  SP+
Sbjct: 150  ADLPRSLSP-KPFDRSKPSSASANAPPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQ 208

Query: 1463 GSIDKSKSPQ---QSFDGSR--SPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDR 1517
                K  SP+    + D  R  SPR + +++    +D +R   P P   +   P+    R
Sbjct: 209  AISSKPPSPRAEPPTLDTPRPPSPRAASLRADPPRLDAARPTTPRPPSPLADAPRLDAPR 268

Query: 1518 SPCKSPGASR 1527
                 P + R
Sbjct: 269  PTTPKPPSPR 278


>At5g22450.1 68418.m02618 expressed protein
          Length = 1180

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 21/71 (29%), Positives = 30/71 (42%)

Query: 1250 SAGNIEVGNISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDK 1309
            + G+    N   E S    E + SG     ++R   I DV+     +V +S  + V S  
Sbjct: 1006 NGGSGTASNTLNEPSNHQAEAKGSGAVSSTKRREALIDDVIGCASSKVTTSKGSAVLSGG 1065

Query: 1310 EPAGSRSEGED 1320
               G RSE ED
Sbjct: 1066 GAQGKRSERED 1076


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical to
            gi_11935088_gb_AAG41964
          Length = 209

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 1256 VGNISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDKEPAGSR 1315
            VG  S  +S     T  S P      +S  +        K   +SA++PVES K PA   
Sbjct: 19   VGGQSPISSPTKSPTTPSAPTTS-PTKSPAVTSPTTAPAKTPTASASSPVESPKSPA--- 74

Query: 1316 SEGEDEPPPPPVKRSLGRTP 1335
               E  PPP PV  S    P
Sbjct: 75   PVSESSPPPTPVPESSPPVP 94


>At3g25840.1 68416.m03219 protein kinase family protein contains Pfam
            profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 1400 RSCSGSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459
            R  S   + RDRS  R +DR    RDR ++    K  +K S  + +   R  R   +  R
Sbjct: 246  RQYSREVLERDRSKERDMDREGSIRDRDSE--GSKRRDKDS-DRRREREREKRREIESDR 302

Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSR 1497
              R   ++ +S  +  D  +   G  ++ R N   RSR
Sbjct: 303  ERRKEKERERSIDR--DRRKEREGDYLRDRANERGRSR 338


>At5g48610.1 68418.m06012 expressed protein ; expression supported by
            MPSS
          Length = 470

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 8/126 (6%)

Query: 1411 RSPNRSLDRASPDRDRVTKVIVCKS-PNKSSLKQTKTLHRSPRG-SFDQSRSPRGSIDKS 1468
            +S   ++ R S   D     ++ K   N+  ++QT++  +S R  +  +S  PR      
Sbjct: 166  KSSENAVSRVSFGADHKRAEVMGKPMENRDQVRQTESAEKSHRKENVTKSEKPRDQEGVK 225

Query: 1469 KSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKG--IMRTPQASFDRSPCKSPGAS 1526
            K+  +  D ++  +    + +  S++++R  KP   +G  +    + S D   CK P  S
Sbjct: 226  KTEAKDKDRNKEKK----EEKTESINKTRQEKPKLIRGPKLEEREKDSPDLRNCKLPDVS 281

Query: 1527 RRSSKS 1532
            R S K+
Sbjct: 282  RTSIKN 287


>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
            nearly identical to SF2/ASF-like splicing modulator Srp30
            [Arabidopsis thaliana] GI:4775270
          Length = 268

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1432 VCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQ-QSFDGSRSPRGSIMKSRE 1490
            V +SP+ S   ++++  R P  S+  S+S   S  +S SP+ +    SRS   S+ +S+ 
Sbjct: 190  VSRSPDDSKSYRSRSRSRGPSCSYS-SKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQS 248

Query: 1491 NSVDRSRSPKPAP 1503
             S  RSRS   +P
Sbjct: 249  RSKSRSRSRSNSP 261


>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
            (RSP41) nearly identical to SP|P92966
            Arginine/serine-rich splicing factor RSP41 {Arabidopsis
            thaliana}
          Length = 357

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 1409 RDRSPNRSLDRASPDRDRVTKVIVCK----SPNKSSLKQTKTLHRSPRGSFDQSRSPRGS 1464
            R  SP R  +R SPD  R    +  K    SP+    +++ + ++  R S D  R  R  
Sbjct: 191  RSPSPYRR-ERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRR 249

Query: 1465 IDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSP 1523
             ++  SP+     +RSPR    K R      SRSP P  K+   R+P     R   +SP
Sbjct: 250  -ERVASPENGAVRNRSPR----KGR----GESRSPPPYEKRRESRSPPPYEKRRESRSP 299



 Score = 31.9 bits (69), Expect = 3.6
 Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 1409 RDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKS 1468
            RDRSP+R     SP R         +  +  + K+ +T     RG     RSP       
Sbjct: 182  RDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGR----RSPSPYKRAR 237

Query: 1469 KSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPG--AS 1526
             SP    D  R  R   + S EN   R+RSP+    +G  R+P     R   +SP     
Sbjct: 238  LSPDYKRDDRRRER---VASPENGAVRNRSPRKG--RGESRSPPPYEKRRESRSPPPYEK 292

Query: 1527 RRSSKS 1532
            RR S+S
Sbjct: 293  RRESRS 298


>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
            (RSP41) nearly identical to SP|P92966
            Arginine/serine-rich splicing factor RSP41 {Arabidopsis
            thaliana}
          Length = 356

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 1409 RDRSPNRSLDRASPDRDRVTKVIVCK----SPNKSSLKQTKTLHRSPRGSFDQSRSPRGS 1464
            R  SP R  +R SPD  R    +  K    SP+    +++ + ++  R S D  R  R  
Sbjct: 191  RSPSPYRR-ERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRR 249

Query: 1465 IDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSP 1523
             ++  SP+     +RSPR    K R      SRSP P  K+   R+P     R   +SP
Sbjct: 250  -ERVASPENGAVRNRSPR----KGR----GESRSPPPYEKRRESRSPPPYEKRRESRSP 299



 Score = 31.9 bits (69), Expect = 3.6
 Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 1409 RDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKS 1468
            RDRSP+R     SP R         +  +  + K+ +T     RG     RSP       
Sbjct: 182  RDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGR----RSPSPYKRAR 237

Query: 1469 KSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPG--AS 1526
             SP    D  R  R   + S EN   R+RSP+    +G  R+P     R   +SP     
Sbjct: 238  LSPDYKRDDRRRER---VASPENGAVRNRSPRKG--RGESRSPPPYEKRRESRSPPPYEK 292

Query: 1527 RRSSKS 1532
            RR S+S
Sbjct: 293  RRESRS 298


>At4g09270.1 68417.m01535 hypothetical protein same aa sequence as
            protein T8A17_30 because of location on repetitive
            section
          Length = 100

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 1257 GNISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDKEPAGSRS 1316
            G ++ + +   ++    G  +P  Q  + + + + N   R+  +A AP  + ++P  +  
Sbjct: 8    GRVANQRANRVDDAPADGEAQPLIQGIRGMFEELMN---RIPQAAPAPAPTAQQPEENVL 64

Query: 1317 EGEDEPPPPP 1326
              + +PPPPP
Sbjct: 65   PQQQQPPPPP 74


>At4g09220.1 68417.m01528 hypothetical protein
          Length = 100

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 1257 GNISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDKEPAGSRS 1316
            G ++ + +   ++    G  +P  Q  + + + + N   R+  +A AP  + ++P  +  
Sbjct: 8    GRVANQRANRVDDAPADGEAQPLIQGIRGMFEELMN---RIPQAAPAPAPTAQQPEENVL 64

Query: 1317 EGEDEPPPPP 1326
              + +PPPPP
Sbjct: 65   PQQQQPPPPP 74


>At1g24150.1 68414.m03047 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02181
          Length = 725

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 1257 GNISRENSQDAEETQDSGP--EEPF-RQRSKTIGDVVENGGKRVASSAAAP-VESDKEPA 1312
            G+   +N   ++  + SGP  E P  R RS T   V+ N   R A++   P V++D    
Sbjct: 177  GDDEEKNVIYSKSKKKSGPVTETPLLRGRSSTSHSVIHNDNYRNATTTHPPHVKTDSFEF 236

Query: 1313 GSRSEGEDEPPPPPVKRSLGRTP 1335
                     PPPPP+      TP
Sbjct: 237  VKPDPTPPPPPPPPIPVKQSATP 259


>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
            putative similar to U2 snRNP auxiliary factor, large
            subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 565

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 1400 RSCSGSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459
            R    S  +RDR   +S +R S D+DR  +    +S       + +   R  RG  D   
Sbjct: 66   RDSEVSRRSRDRDGEKSKER-SRDKDRDHRERHHRSSRHRDHSRERG-ERRERGGRDDD- 122

Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKK 1505
              R S D+    ++   G R  R S  +S++ S  R+RS  P+  K
Sbjct: 123  DYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSERRTRSRSPSKSK 168


>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
            putative similar to U2 snRNP auxiliary factor, large
            subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 542

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 1400 RSCSGSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459
            R    S  +RDR   +S +R S D+DR  +    +S       + +   R  RG  D   
Sbjct: 66   RDSEVSRRSRDRDGEKSKER-SRDKDRDHRERHHRSSRHRDHSRERG-ERRERGGRDDD- 122

Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKK 1505
              R S D+    ++   G R  R S  +S++ S  R+RS  P+  K
Sbjct: 123  DYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSERRTRSRSPSKSK 168


>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
            putative similar to U2 snRNP auxiliary factor, large
            subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 573

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 1400 RSCSGSSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSR 1459
            R    S  +RDR   +S +R S D+DR  +    +S       + +   R  RG  D   
Sbjct: 66   RDSEVSRRSRDRDGEKSKER-SRDKDRDHRERHHRSSRHRDHSRERG-ERRERGGRDDD- 122

Query: 1460 SPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKK 1505
              R S D+    ++   G R  R S  +S++ S  R+RS  P+  K
Sbjct: 123  DYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSERRTRSRSPSKSK 168


>At3g57300.1 68416.m06378 transcriptional activator, putative
           similar to transcriptional activator SRCAP [Homo
           sapiens] GI:5106572; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain
          Length = 1507

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 861 PPKVSSRTNSFEIENLL-----KSAEQVTGWCRSPAETRRGSPTGSVASAAAGTPSRHLS 915
           PPK S   N F++E L+     K  ++V  +  S  +  R +  G VA+ + G+ SR ++
Sbjct: 7   PPKDSPYANLFDLEPLMKFRIPKPEDEVDYYGSSSQDESRSTQGGVVANYSNGSKSR-MN 65

Query: 916 DADKLRKVLLEVVDTE 931
            + K RK   E  D E
Sbjct: 66  ASSKKRKRWTEAEDAE 81


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
            domain-containing protein / RNA recognition motif
            (RRM)-containing protein KIAA0122 gene , Homo sapiens,
            EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
            recognition motif. (a.k.a. RRM, RBD, or RNP domain),
            PF01585: G-patch domain, weak hit to PF00641: Zn-finger
            in Ran binding protein and others
          Length = 1105

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 1409 RDRSPNRSLDRASPDRDRV-TKVIVCKSPNKSSLKQ-TKTLHRSP-RGSFDQSRSPRGSI 1465
            +DR  N S DR    RDR   K    +  ++S  K+  K+  RS  RG F +SRSPRG  
Sbjct: 201  QDRERN-SRDREWDSRDREWDKRCYSRERDESPHKRYEKSRSRSTGRGEFSRSRSPRGRS 259

Query: 1466 DKSKSPQQSFDG---SRSPRGSIMKSRENSVDRSRSP 1499
                  + S++G   + S R    + R N    S +P
Sbjct: 260  HGRSYREDSYEGDHWNESERRREYEDRHNQDHFSATP 296


>At5g55660.1 68418.m06940 expressed protein similar to unknown protein
            (pir||T08929)
          Length = 778

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 1260 SRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVES-------DKEPA 1312
            S EN +  EE+++   ++  ++ S+T  D  E+ GK  +   A P +S        K  A
Sbjct: 570  SEENVESEEESEEETKKK--KRGSRTSSDKKESAGKSRSKKTAVPTKSSPPKKATQKRSA 627

Query: 1313 GSRSEGEDEPPPPP 1326
            G R + +D+    P
Sbjct: 628  GKRKKSDDDSDTSP 641


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing protein
            contains similarity to SP|Q02917 Early nodulin 55-2
            precursor {Glycine max}; PF02298: Plastocyanin-like
            domain
          Length = 370

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 1435 SPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVD 1494
            SP +     +     +P  +  +S+ PR S+  ++ P+ S   S +P  S   +  +S  
Sbjct: 146  SPTQPPKSHSPVSPVAPASAPSKSQPPRSSVSPAQPPKSSSPISHTPALSPSHATSHS-P 204

Query: 1495 RSRSPKPAPKKGIMRTPQASFDRSPCKSP 1523
             + SP P     +  +P  S   +P  SP
Sbjct: 205  ATPSPSPKSPSPVSHSPSHSPAHTPSHSP 233


>At4g35785.2 68417.m05083 transformer serine/arginine-rich
            ribonucleoprotein, putative similar to transformer-SR
            ribonucleoprotein [Nicotiana tabacum]
            gi|1781299|emb|CAA70700
          Length = 141

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 1460 SPRGSID-KSKSPQQSFDGSRSPRGSIMKSRENSVDRSRS-PKP-APKKGIMRTPQASFD 1516
            SP+   D +S SP++    SRS   S  +SR     RSRS P+P +P +   R+   S  
Sbjct: 4    SPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRG 63

Query: 1517 RSPCKSPGAS 1526
            RS  ++PG +
Sbjct: 64   RSEVENPGTT 73


>At4g35785.1 68417.m05082 transformer serine/arginine-rich
            ribonucleoprotein, putative similar to transformer-SR
            ribonucleoprotein [Nicotiana tabacum]
            gi|1781299|emb|CAA70700
          Length = 140

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 1470 SPQQSFDG-SRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRR 1528
            SPQ+  D  S SPR    +SR  S  RSRS +P  +      P+     SP +S G SR 
Sbjct: 4    SPQRRRDSRSPSPRKERARSRSRSRSRSRS-RPRLRSRSRSLPRPV---SPSRSRGRSR- 58

Query: 1529 SSKSGGEKLARLGT 1542
             S+S G ++   GT
Sbjct: 59   -SRSRGSEVENPGT 71


>At3g25500.1 68416.m03171 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02181
          Length = 1051

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 1495 RSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSKSGGEKLARLGTNSLDRATHYSQL 1554
            RSRSP  +    +  +P+ +  +SP  SP  S R+S+S      R  ++SLD +   S +
Sbjct: 458  RSRSPSSS-SSSVCSSPEKASHKSPVTSPKLSSRNSQSLSSSPDRDFSHSLDVSPRISNI 516

Query: 1555 A 1555
            +
Sbjct: 517  S 517


>At3g14880.1 68416.m01881 DNA-binding protein-related low similarity
           to tumor-related protein [Nicotiana glauca x Nicotiana
           langsdorffii] GI:688423, SP|O24160 TGACG-sequence
           specific DNA-binding protein TGA-2.1 {Nicotiana tabacum}
          Length = 237

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 214 IESVLSAWAAEEGLTSTGEYSEPDERIVRRRKLIKYKKRTDILNIRRIVYDVSIL 268
           I   LS W  +      G  S+PD+RI   R+L +   RTD L +R I   V +L
Sbjct: 152 ITEELSEWQDDASDLVMGTSSDPDQRI---RRLAEIVHRTDDLRLRTITRVVEVL 203


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 1437 NKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRS 1496
            + SS   + ++  SP  S   S SP      S SP  S   S S   S   SRENS    
Sbjct: 454  DSSSPDSSSSVSSSPDSSSSVSSSPDSYSSFSSSPDSSSSVSSSLFSS---SRENSSSPD 510

Query: 1497 RSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSSKSG 1533
             S   +       +  +S D S    P A+  SS SG
Sbjct: 511  YSNSVSSSLDYSGSVSSSSDYSSSVFPSANSSSSSSG 547


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
            protein-related / DCL protein-related similar to DCL
            protein, chloroplast precursor (Defective chloroplasts
            and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
            esculentum]
          Length = 839

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 3/134 (2%)

Query: 1411 RSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKS 1470
            +S N  L +  PDR           P  S  +       +P G  +QS+ P  SI     
Sbjct: 688  KSLNNYLMKKYPDRAEEFIDKYFTKPRPSGNRDRNNQDATPPGE-EQSQPPNQSIGNGGD 746

Query: 1471 PQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSS 1530
              Q+   S+SP  S  +++  S  +++SP     +   ++   S  +S  +S   S+  S
Sbjct: 747  DFQTQTQSQSP--SQTRAQSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQS 804

Query: 1531 KSGGEKLARLGTNS 1544
            +S  +  ++  T S
Sbjct: 805  QSQSQSPSQTQTQS 818



 Score = 30.7 bits (66), Expect = 8.3
 Identities = 23/87 (26%), Positives = 40/87 (45%)

Query: 1443 QTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPA 1502
            QT+T  +SP  +  QS S   +   S++  QS   S+S   S  +S+  S  +S+S   +
Sbjct: 749  QTQTQSQSPSQTRAQSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQS 808

Query: 1503 PKKGIMRTPQASFDRSPCKSPGASRRS 1529
                  +T   S  ++  +SP +   S
Sbjct: 809  QSPSQTQTQSPSQTQAQAQSPSSQSPS 835


>At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4) contains
            Pfam domain PF00098: Zinc knuckle; identical to cDNA
            CAX-interacting protein 4 GI:27651998
          Length = 332

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 8/194 (4%)

Query: 1405 SSINRDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGS 1464
            SS   + S +   D  S + +R+      K    SS+K+T ++ +  +   D+S S   S
Sbjct: 137  SSEEEEESESSDSDVDS-EMERIIAERFGKKKGGSSVKKTSSVRKKKKRVSDESDSDSDS 195

Query: 1465 IDKSKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPG 1524
             D+ +  +     S   R S+ +S +    RS+  K   ++G  R    S D S  +   
Sbjct: 196  GDRKRRRRSMKKRSSHKRRSLSESEDEEEGRSKRRK--ERRGRKRDEDDS-DESEDEDDR 252

Query: 1525 ASRRSSKSGGEKLARLGTNSLDRATHYSQLAKVEDKAMKMGIVVSKSTESIAKAIEHTTC 1584
              +R S+    +      +S D  +  S+    +D+  K    V+ S++S A        
Sbjct: 253  RVKRKSRKEKRRRRSRRNHSDDSDSESSE----DDRRQKRRNKVAASSDSEANVSGDDVS 308

Query: 1585 VQCYLSGKRQSKSS 1598
                 S KR  K S
Sbjct: 309  RVGRGSSKRSEKKS 322


>At5g60150.1 68418.m07540 expressed protein ; expression supported by
            MPSS
          Length = 1195

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 19/63 (30%), Positives = 29/63 (46%)

Query: 1434 KSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQSFDGSRSPRGSIMKSRENSV 1493
            +SP K+   Q   L  S R    +S S   S  KSK+       S  P+ S+ ++R N +
Sbjct: 224  QSPIKAKNSQPTQLKNSQRSLGSESFSKNTSSTKSKTKSSLASKSSIPKPSLKQARRNVI 283

Query: 1494 DRS 1496
             +S
Sbjct: 284  SKS 286


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
            cyclophilin-type family protein similar to cyclophylin
            [Digitalis lanata] GI:1563719; contains Pfam profile
            PF00160: peptidyl-prolyl cis-trans isomerase,
            cyclophilin-type; contains AT-donor splice site at intron
            9
          Length = 570

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 1409 RDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLK-QTKTLHRSPRGSFDQSRSPRGSIDK 1467
            R RSP R   R SP R    +    +SP+    + +  +  +SPR    +S+SPR     
Sbjct: 470  RFRSPPR---RRSPPRYNRRRRSTSRSPDGYRRRLRDGSRSQSPRHR-SRSQSPRKRQPI 525

Query: 1468 SKSPQQSFDGSRSPRGSIMKSRENSVDRSRSPKPAPKKGIM 1508
            S+  +      RSP      S   S+  S SP P  K+G++
Sbjct: 526  SQDLKSRLGPQRSPIRGGRTSPAESLSPSHSPSPPGKRGLV 566


>At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing protein
            contains Pfam profile PF01429: Methyl-CpG binding domain
          Length = 254

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 1436 PNK-SSLKQTKTLHRSPRGSFDQSRSPRGSIDKSKSPQQS---FDGSRS--PRGSIMKSR 1489
            PNK  S+K+T+ +  +P G    +R       KS     +   FD + S  PR S   S 
Sbjct: 24   PNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGNPAIAEFDWTTSGTPRRSARISE 83

Query: 1490 ENSVDRSRSPKPAPKKGIMRTPQASFDRSPCKSPGASRRSS 1530
            +     S   +P  K+G  ++P +  D    KS G    +S
Sbjct: 84   KTKATPSPDKEPPKKRGRTKSPVSKKDAEGEKSEGGGEENS 124


>At3g01690.1 68416.m00101 expressed protein
          Length = 361

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 1409 RDRSPNRSLDRASPDRDRVTKVIVCKSPNKSSLKQTKTLHRSPRGSFDQSRSPRGSIDKS 1468
            RD  P RS+DR    R + T+    + P KS  K + +  +  + SFDQ    R S+D  
Sbjct: 278  RDAPPRRSMDRRVKPR-QSTERREKEKPPKSQSKMSSSSSKL-KISFDQLDRSRRSVDCH 335

Query: 1469 KSPQQSFDGSRSPRGSI 1485
            +  ++S D     R S+
Sbjct: 336  EKTRKSVDQIERGRKSV 352


>At2g22795.1 68415.m02704 expressed protein
          Length = 734

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 1259 ISRENSQDAEETQDSGPEEPFRQRSKTIGDVVENGGKRVASSAAAPVESDKEPAGSRSEG 1318
            I +E +   EE++++  E   ++ S +  +  E   +++    +AP E  KE    + E 
Sbjct: 547  IEKEEASSQEESKENETETKEKEESSSQEETKEKENEKIEKEESAPQEETKEKENEKIEK 606

Query: 1319 ED 1320
            E+
Sbjct: 607  EE 608


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,850,279
Number of Sequences: 28952
Number of extensions: 1318129
Number of successful extensions: 4576
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 4281
Number of HSP's gapped (non-prelim): 240
length of query: 1598
length of database: 12,070,560
effective HSP length: 91
effective length of query: 1507
effective length of database: 9,435,928
effective search space: 14219943496
effective search space used: 14219943496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 66 (30.7 bits)

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