Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000378-TA|BGIBMGA000378-PA|IPR000697|EVH1
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)                    40   0.010
SB_30523| Best HMM Match : TPR_2 (HMM E-Value=9.9e-30)                 30   8.1  
SB_3154| Best HMM Match : DUF812 (HMM E-Value=1.8)                     30   8.1  

>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
          Length = 924

 Score = 39.5 bits (88), Expect = 0.010
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 77  VFHITAYNSQVDKILDVRLLQPGTRIGQASECFVYWKDPMTNDTWGLNFTSPIDAKQFRE 136
           VF +TA ++    + +        R+ + S+ FV W++  + + WGLNF S  +A +F +
Sbjct: 147 VFEVTA-STHKGTVFNTEFNLKEIRLKKTSDFFVQWRNRKSRNAWGLNFISAEEADRFMQ 205

Query: 137 CC 138
            C
Sbjct: 206 FC 207


>SB_30523| Best HMM Match : TPR_2 (HMM E-Value=9.9e-30)
          Length = 908

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 734 RSEYTSDRESSRYGIVQQASIDSTDSRICYLTSSELPYKVCPAL 777
           RS   S+   ++YG+   A+  S D  +C L S  LP  V  +L
Sbjct: 390 RSRALSENLQTKYGLQGDATKSSLDQEVCLLVSGTLPSFVVVSL 433


>SB_3154| Best HMM Match : DUF812 (HMM E-Value=1.8)
          Length = 815

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 491 PSSSNGNSDQEPCQRRDPRQH 511
           PS+S GN  Q P Q+ +P QH
Sbjct: 65  PSTSQGNEHQRPLQQHNPSQH 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.128    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,064,840
Number of Sequences: 59808
Number of extensions: 646837
Number of successful extensions: 1588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1584
Number of HSP's gapped (non-prelim): 4
length of query: 779
length of database: 16,821,457
effective HSP length: 88
effective length of query: 691
effective length of database: 11,558,353
effective search space: 7986821923
effective search space used: 7986821923
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)