GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000378-TA|BGIBMGA000378-PA|IPR000697|EVH1
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    33   0.11 
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    29   3.3  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    27   7.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 161 TGSSTLPXXXXXXXXXXXXXXXXXXXXXSDKVAAATS----STSLYDNVTNSQAT-HQPP 215
           T S+++P                     S    ++TS    S+S Y NVT S +T   PP
Sbjct: 634 TSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSSSTVSTPP 693

Query: 216 PKRKMLNTFAT 226
           P     +TF T
Sbjct: 694 PTTSFPSTFTT 704


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 701 SLRHEGSLNDSGYRSNRADSFEQRGVFDRQDSVRSEYTSDRESSRY 746
           S R  G   D  YR  R +  ++R     +DS R +Y+  R   RY
Sbjct: 21  SSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQRRDYSPARRRDRY 66


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 38  LWAEVFHVSASGAGTVKWQQVSEDLVPVNITCIQDSPECVFHITAYNSQVDKILDVRL 95
           L + VF+++    G   W Q+ E     N   +++S    F +T     + K LD+ L
Sbjct: 710 LRSAVFNIAIRYGGAKSWDQLLEIYTKTNDPYVRNSCLRAFGVTEDEKYIQKTLDLTL 767


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.128    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,860
Number of Sequences: 5004
Number of extensions: 85027
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 3
length of query: 779
length of database: 2,362,478
effective HSP length: 78
effective length of query: 701
effective length of database: 1,972,166
effective search space: 1382488366
effective search space used: 1382488366
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)