GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000377-TA|BGIBMGA000377-PA|IPR011129|Cold shock protein,
IPR001878|Zinc finger, CCHC-type, IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold
         (154 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   4.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   8.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    20   8.3  

>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 90  RCYNCGEFA 98
           +CY CG+F+
Sbjct: 126 KCYKCGDFS 134


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 80 PLSKIRFRKIRCYNCGEFAN 99
          P S  R   I C  CG+F++
Sbjct: 27 PSSSSRILDIPCKVCGDFSS 46


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 80 PLSKIRFRKIRCYNCGEFAN 99
          P S  R   I C  CG+F++
Sbjct: 27 PSSSSRILDIPCKVCGDFSS 46


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.139    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,872
Number of Sequences: 317
Number of extensions: 1457
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 154
length of database: 114,650
effective HSP length: 52
effective length of query: 102
effective length of database: 98,166
effective search space: 10012932
effective search space used: 10012932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)