Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000377-TA|BGIBMGA000377-PA|IPR011129|Cold shock protein,
IPR001878|Zinc finger, CCHC-type, IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold
(154 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 43 2e-05
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 35 0.006
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 28 0.73
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 27 0.96
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 1.7
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 26 2.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 3.9
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 5.1
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 5.1
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 6.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 24 8.9
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 24 8.9
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 24 8.9
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 43.2 bits (97), Expect = 2e-05
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCP 128
CYNC + H A++C+ Q K C+ C + HLV DCP
Sbjct: 38 CYNCNQ-TGHKASECTEPQQEKTCYACGTAGHLVRDCP 74
Score = 36.7 bits (81), Expect = 0.002
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEKK 134
RCYNCGE H A +C+ G C+NC H ++C ++K
Sbjct: 18 RCYNCGE-NGHQARECTKG---SICYNCNQTGHKASECTEPQQEK 58
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 34.7 bits (76), Expect = 0.006
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 89 IRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
+ C CG +HI+ +C P K+C NC H+ A C
Sbjct: 105 VLCTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARC 140
Score = 30.3 bits (65), Expect = 0.14
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 114 CHNCKSEDHLVADCP 128
CHNCK H+ DCP
Sbjct: 89 CHNCKGNGHISKDCP 103
Score = 25.8 bits (54), Expect = 2.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 112 KRCHNCKSEDHLVADCPI 129
K C+NC S++H DC +
Sbjct: 187 KFCYNCASDEHFGDDCTL 204
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 27.9 bits (59), Expect = 0.73
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 90 RCYNCGEFANHIAAKCSIGPQ---PKR--CHNCKSEDHLVADC 127
+C+ C E H++ +C P+ PK C C S HL DC
Sbjct: 125 KCFICHE-NGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166
Score = 26.2 bits (55), Expect = 2.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 112 KRCHNCKSEDHLVADCP 128
K C C+ + H+V DCP
Sbjct: 77 KFCFACRQQGHIVQDCP 93
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 27.5 bits (58), Expect = 0.96
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 46 DEEVEFECKESDKGLEATRVTGPNGTDC-HGSDRRPLSKIRFRKIRCYNCGEFANHIAAK 104
D + ++C SDK + +V + DC GSD S K C N G +++I
Sbjct: 41 DAKGNWKCLGSDKLISFNQVND-DYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIP-- 97
Query: 105 CSIGPQPKRCHNCKSEDHLVADCPIKVEKKKDE 137
S C C D + CP +K E
Sbjct: 98 -SNRVDDTVCDCCDGSDESLIKCPNTCAQKARE 129
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.6 bits (56), Expect = 1.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 22 PDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRVTGPNGTDCHGS 76
P G VF QS+ MP +RS EE+ + + ++G + N T GS
Sbjct: 191 PQTNGTSVF--QSITCMPAYRSYSFEELRLQ--DYNQGRRFGNASSTNTTSAFGS 241
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 105 CSIGPQPKRCHNCKSEDHLVADCPIKVE 132
CS+ P +C NCK+ L+ C +E
Sbjct: 42 CSLNPNIIKCGNCKNLCRLLLQCYAPLE 69
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.4 bits (53), Expect = 3.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 114 CHNCKSEDHLVADCPIK 130
C +C S H+ DCP++
Sbjct: 336 CRHCGSIGHIARDCPVR 352
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.0 bits (52), Expect = 5.1
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 23 DDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRV 65
DD Q++ Q ++ L D+E +++ K+ KG ++ +V
Sbjct: 74 DDESQELESPQGPKELTAVTELDDDEFDYKPKKGKKGKKSKKV 116
Score = 24.6 bits (51), Expect = 6.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 20 ITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEA 62
+ DD Q++ Q ++ L D+E +++ K+ KG +A
Sbjct: 116 VEEDDEPQEIESPQGPKELTAVTELDDDEFDYKPKKGKKGKKA 158
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 5.1
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 83 KIRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLV 124
++++ + C CG S+ + CHNC S V
Sbjct: 326 QLKYIRFTCTKCGATLGPFFQDSSVEVKISFCHNCSSRGPFV 367
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 12 NVAKGWGFITPDDGGQDVFVHQSVLQMPGFRS 43
++AK G D GG D V+Q + +M G S
Sbjct: 601 SIAKARGASAGDSGGGDRVVNQLLTEMDGVNS 632
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 24.2 bits (50), Expect = 8.9
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEKKKDE 137
CY+ G + K P + CH+ +S + VA PI+ KD+
Sbjct: 650 CYDIGMYDLQKILKLKKTPICRWCHSKRSSEWFVAP-PIEESSPKDK 695
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 80 PLSKIRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSE 120
P+S +R KI ++ ++N+I+ + +G + N SE
Sbjct: 421 PISNVRHLKIAEHSSLAYSNNISVRWFLGATSAQNRNASSE 461
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 24.2 bits (50), Expect = 8.9
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 36 LQMPGFRSLGDEEVEFECKESDKGLEATRVTGPNGTDCHGSDRRPLSKIR 85
++ P FR GDE FE +E + L R + + +R +IR
Sbjct: 39 VECPRFRREGDEPFAFEAQEFSRRLVVGRPASVSTLYVIPTSKREYGRIR 88
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.139 0.459
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,926
Number of Sequences: 5004
Number of extensions: 25680
Number of successful extensions: 64
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 19
length of query: 154
length of database: 2,362,478
effective HSP length: 67
effective length of query: 87
effective length of database: 2,027,210
effective search space: 176367270
effective search space used: 176367270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)
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