Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000377-TA|BGIBMGA000377-PA|IPR011129|Cold shock protein,
IPR001878|Zinc finger, CCHC-type, IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold
(154 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 84 4e-17
08_01_0202 - 1638978-1639571 77 5e-15
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 40 7e-04
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296 37 0.008
12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998 36 0.019
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 36 0.019
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 36 0.019
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 35 0.033
05_01_0553 + 4849535-4849553,4850727-4851913 31 0.41
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 31 0.54
08_02_0701 + 20177860-20178603 31 0.54
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 31 0.54
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 30 0.72
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580 30 0.72
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600 30 0.95
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 29 1.3
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 29 1.3
05_07_0361 + 29555446-29556138 29 1.7
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 29 1.7
05_03_0113 + 8526595-8527440,8527662-8528357 29 2.2
03_05_0314 - 23035295-23036342,23036552-23036616 29 2.2
08_02_0009 + 11216532-11218687,11220727-11225998 28 2.9
08_02_0003 + 11180421-11180757,11180773-11185715 28 2.9
08_02_0002 + 11173365-11173512,11173528-11178470 28 2.9
07_01_1159 - 10980975-10981509,10982021-10982262 28 2.9
04_03_0371 - 15050825-15051124 28 2.9
04_03_0321 + 14335813-14336112 28 2.9
11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196 28 3.8
03_02_0737 + 10820728-10821096,10821320-10821532,10821631-108217... 28 3.8
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712... 27 5.1
08_01_0768 + 7408004-7408159,7409101-7409297,7427823-7428206,742... 27 5.1
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 27 6.7
12_02_0371 - 18187169-18188386 27 8.9
10_02_0125 - 5537541-5538758 27 8.9
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118... 27 8.9
04_04_0086 - 22679233-22680450 27 8.9
04_03_0151 + 11905926-11906618 27 8.9
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594 27 8.9
>02_01_0158 - 1103461-1104186
Length = 241
Score = 84.2 bits (199), Expect = 4e-17
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Query: 3 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG-L 60
+ RG KWFN KG+GFI+PDDG +D+FVHQS ++ GFRSL + E+VEF ES+ G
Sbjct: 6 RHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLAEGEQVEFAISESEDGRT 65
Query: 61 EATRVTGPNGTDCHG 75
+A VTGP+G+ G
Sbjct: 66 KAVDVTGPDGSFVKG 80
Score = 29.9 bits (64), Expect = 0.95
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
Query: 91 CYNCGEFANHIAAKCSIGPQ-----------PKRCHNCKSEDHLVADC 127
CYNCGE H+A C G + C+NC H+ DC
Sbjct: 193 CYNCGE-TGHLARDCYNGGGGGGGGRFGGGGDRSCYNCGEAGHIARDC 239
>08_01_0202 - 1638978-1639571
Length = 197
Score = 77.4 bits (182), Expect = 5e-15
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 5 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG-LEA 62
+G KWF+ KG+GFITPDDGG+D+FVHQS L+ G+RSL D + VEF + G +A
Sbjct: 7 KGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDGRTKA 66
Query: 63 TRVTGPNGTDCHGSDR 78
VT P G G R
Sbjct: 67 VDVTAPGGGALTGGSR 82
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 91 CYNCGEFANHIAAKC 105
CYNCGE HIA +C
Sbjct: 179 CYNCGE-TGHIAREC 192
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 40.3 bits (90), Expect = 7e-04
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 4 RRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEAT 63
R GR ++ ++ +GF+ D + + L + G + G + + + ++GL +
Sbjct: 40 RYGRVRFVDLKNEYGFVEFSDPRD---ANDARLDLDGRKYDGSDIIVQFARGVERGLGGS 96
Query: 64 RVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHL 123
R G HGSD C+NCG H C+ G RC+ C H+
Sbjct: 97 R--GYKARPAHGSDH------------CFNCG-MEGHWHRNCTAGDWTNRCYGCGERGHI 141
Query: 124 VADCPIKVEKKKDE 137
+ +C + K E
Sbjct: 142 LRECKNSPKDLKQE 155
>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
Length = 247
Score = 36.7 bits (81), Expect = 0.008
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 91 CYNCGEFANHIAAKCSIGP----QPKRCHNCKSEDHLVADC 127
C NCG+ + HIA +CS P + + C NC HL A+C
Sbjct: 98 CRNCGK-SGHIARECSAPPMLPGEMRLCSNCYKPGHLAAEC 137
Score = 35.9 bits (79), Expect = 0.014
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCP 128
C NC + H+AA+C+ K C+NC+ HL +CP
Sbjct: 124 CSNCYK-PGHLAAECT---NEKACNNCRKSGHLARNCP 157
Score = 34.7 bits (76), Expect = 0.033
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCP 128
C+ CG HIAA+CS C NCK H+ CP
Sbjct: 60 CHACG-LPGHIAAECS---SKDLCWNCKEPGHMANSCP 93
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 85 RFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIK 130
RF C NC H A C P CH C H+ A+C K
Sbjct: 35 RFPNDLCNNCKR-PGHFARDC---PNVALCHACGLPGHIAAECSSK 76
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 86 FRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCP 128
+ + C C + H++ C G CHNC H+ +CP
Sbjct: 194 YSDVVCRACNQ-VGHMSRDCMAGAF-MICHNCGGRGHMAYECP 234
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCP 128
C NC + + H+A C P C+ C HL +CP
Sbjct: 143 CNNCRK-SGHLARNC---PNEPVCNLCNVSGHLARECP 176
>12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998
Length = 375
Score = 35.5 bits (78), Expect = 0.019
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 88 KIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEKK 134
+I+C+ CG +H A C P P ++C + H+ + CP+ + KK
Sbjct: 135 RIKCFECGREGHH-QATC---PNPHLYYSCHNTGHISSHCPLLLGKK 177
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 35.5 bits (78), Expect = 0.019
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
RC+NCG H A C G +C+ C H+ +C
Sbjct: 103 RCFNCG-IDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 35.5 bits (78), Expect = 0.019
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
RC+NCG H A C G +C+ C H+ +C
Sbjct: 150 RCFNCG-IDGHWARDCKAGDWKNKCYRCGERGHIERNC 186
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 34.7 bits (76), Expect = 0.033
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 91 CYNCGEFANHIAAKC-----SIGPQPKRCHNCKSEDHLVADCP 128
CYNCGE + H +KC + G + C CK + HL +CP
Sbjct: 122 CYNCGE-SGHSLSKCPKPIENGGTKFASCFVCKQQGHLSKNCP 163
Score = 29.9 bits (64), Expect = 0.95
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 90 RCYNCGEFANHIAAKC---SIGPQPKRCHNCKSEDHLVADCPIK 130
RC+ C + A+H+A C S+ + K C C+ H + +CP K
Sbjct: 71 RCFIC-KAADHVAKVCPEKSLWEKNKICLLCRQRGHSLKNCPDK 113
>05_01_0553 + 4849535-4849553,4850727-4851913
Length = 401
Score = 31.1 bits (67), Expect = 0.41
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 95 GEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCP-------IKVEKKKDE 137
G + H + K S + C+ CK H +ADCP +K +KKK E
Sbjct: 120 GGSSKHYSNKSSGRHSARVCYVCKEPGHFIADCPHLKDGSHMKEDKKKSE 169
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 30.7 bits (66), Expect = 0.54
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVE 132
RC+ C H+ A CS QP C+ C H+ +C + ++
Sbjct: 70 RCFRCLGLG-HLKASCS---QPPTCYRCWYPGHIERNCKVDID 108
>08_02_0701 + 20177860-20178603
Length = 247
Score = 30.7 bits (66), Expect = 0.54
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 70 GTDCHGSDRR-PLSKIRFRKIRCYNCGEFANHIAAKC 105
G D D R P K R+ + CYNCGE HIA C
Sbjct: 210 GGDYPDEDHRSPKRKRRYDRGPCYNCGE-PGHIARDC 245
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 30.7 bits (66), Expect = 0.54
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIK 130
+C+ C ++H AA C P RC+ C+ H+ CP K
Sbjct: 261 KCFRCFA-SDHQAAACR---DPIRCYTCRRSGHISFRCPNK 297
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 30.3 bits (65), Expect = 0.72
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 48 EVEFECKESDKGLEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKCSI 107
E+++E K S +G R T +G HG + C G F H +
Sbjct: 139 ELKWEDKPSKRGQTGGRFT--SGRYGHGPVEGETPPPGYVCRSCGVPGHFIQHCQQERKT 196
Query: 108 GPQPKRCHNCKSEDHLVADCPIKVEKKKDE 137
P C+ C+ H + CP + K D+
Sbjct: 197 PPSGYVCYRCRIPGHFIHHCPTIGDPKFDD 226
>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
Length = 726
Score = 30.3 bits (65), Expect = 0.72
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEK 133
C C + HIA+ CS P RCH+C H+ C + K
Sbjct: 230 CVRCLD-KGHIASNCS---GPVRCHSCLEAGHMSCFCATRPTK 268
>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
Length = 585
Score = 29.9 bits (64), Expect = 0.95
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPI 129
C+ C HI CS C C+SEDH+ CPI
Sbjct: 274 CFRCLT-KGHIMQDCS---SKFYCEICESEDHIATRCPI 308
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 69 NGTDCHGSDRRPLSKIRF--RKIR--CYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLV 124
N D G + + K R R ++ C+NC H + C P RC+NC H+
Sbjct: 106 NAVDQRGEEDQAFKKARTVPRWLQGCCFNCLGLG-HQKSAC---PGSTRCYNCWYSGHIA 161
Query: 125 ADCP 128
+CP
Sbjct: 162 RNCP 165
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 111 PKRCHNCKSEDHLVADCPIKVEKK 134
P RC+ CK H+ + CP K + K
Sbjct: 117 PPRCYICKRSGHISSGCPSKYKNK 140
>05_07_0361 + 29555446-29556138
Length = 230
Score = 29.1 bits (62), Expect = 1.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 114 CHNCKSEDHLVADCPI 129
CHNC+ H +DCP+
Sbjct: 61 CHNCRKPGHRFSDCPL 76
>05_01_0084 +
562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 89 IRCYNCGEFANHIAAKCSI-GPQPKRCHNCKSEDHLVADCP 128
+ C+ C + H + C + C CK H DCP
Sbjct: 947 LECFKCKQ-PGHFSRDCPVQSTGGSECFKCKQPGHFARDCP 986
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 91 CYNCGEFANHIAAKC-SIGPQPKRCHNCKSEDHLVADCPIK 130
CY C + H A C C CK H DCP++
Sbjct: 926 CYKCKQ-PGHYARDCPGQSTGGLECFKCKQPGHFSRDCPVQ 965
>05_03_0113 + 8526595-8527440,8527662-8528357
Length = 513
Score = 28.7 bits (61), Expect = 2.2
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 73 CHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPI-KV 131
C D R ++K+ I C C + H+ A C+I C C S+ H+ CPI K+
Sbjct: 193 CVVDDVRSVAKV----IGCSKCAQ-KGHVVADCTI---EVCCDICNSDSHVNHRCPILKI 244
Query: 132 EK 133
K
Sbjct: 245 PK 246
>03_05_0314 - 23035295-23036342,23036552-23036616
Length = 370
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 114 CHNCKSEDHLVADCP-------IKVEKKKDE 137
C+ CK H +ADCP IK +KKK E
Sbjct: 234 CYVCKEPRHFIADCPHLKDGSHIKEDKKKGE 264
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 113 RCHNCKSEDHLVADCPIKVEKK 134
RC C S DHL CP K +K+
Sbjct: 1511 RCFICNSPDHLSRTCPNKDQKR 1532
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 113 RCHNCKSEDHLVADCPIKVEKK 134
RC C S DHL CP K +K+
Sbjct: 795 RCFICNSPDHLSRTCPNKDQKR 816
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 113 RCHNCKSEDHLVADCPIKVEKK 134
RC C S DHL CP K +K+
Sbjct: 732 RCFICNSPDHLSRTCPNKDQKR 753
>07_01_1159 - 10980975-10981509,10982021-10982262
Length = 258
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 111 PKRCHNCKSEDHLVADCPIKVEKKKDE 137
P RC C S DHL + CP K+ + K E
Sbjct: 222 PNRCFECGSIDHLRSHCP-KLGRGKRE 247
>04_03_0371 - 15050825-15051124
Length = 99
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 67 GPNGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKC 105
G +G+D + S+R K+ +K++CYN G H A +C
Sbjct: 46 GEDGSDSNSSER----KVDRKKVKCYNYG-IHGHYANEC 79
>04_03_0321 + 14335813-14336112
Length = 99
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 67 GPNGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKC 105
G +G+D + S+R K+ +K++CYN G H A +C
Sbjct: 46 GEDGSDSNSSER----KVDRKKVKCYNYG-IHGHYANEC 79
>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
Length = 676
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 27 QDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRVTGPNGTDCHGSD 77
Q V V S +PGF +EE E E ++ + R G D H S+
Sbjct: 225 QGVAVDGSTAYIPGFEDEDEEEGEDEAGDAGEAARGERADGEGSGDEHISE 275
>03_02_0737 +
10820728-10821096,10821320-10821532,10821631-10821732,
10821755-10821793,10821830-10821967,10822182-10822486,
10822784-10822937,10823279-10823404
Length = 481
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 20 ITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRVTGPNG 70
I+P D G+ H S + LGD ++ K+SD +E R GP G
Sbjct: 314 ISPFDSGKRR--HTSFAAVAVVPILGDGSTRYQIKDSDLRIERFRSGGPGG 362
>11_06_0152 +
20669949-20670326,20670887-20670997,20671079-20671280,
20671393-20671675,20672145-20672234,20672366-20672473,
20672595-20672975,20673250-20673324,20673685-20673797,
20676233-20676742,20676807-20677300
Length = 914
Score = 27.5 bits (58), Expect = 5.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 114 CHNCKSEDHLVADCPIKVEKK 134
C NC E H+ +CP++ K+
Sbjct: 179 CFNCGEEGHVAVNCPMEKRKR 199
>08_01_0768 +
7408004-7408159,7409101-7409297,7427823-7428206,
7428456-7428837
Length = 372
Score = 27.5 bits (58), Expect = 5.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 109 PQPKRCHNCKSEDHLVADCPI 129
P + C NC+ H +DCP+
Sbjct: 295 PASRFCRNCRKPGHRFSDCPL 315
>12_02_0792 - 23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 112 KRCHNCKSEDHLVADCP 128
K C+ CK HL DCP
Sbjct: 1000 KICYKCKKSGHLSRDCP 1016
>12_02_0371 - 18187169-18188386
Length = 405
Score = 26.6 bits (56), Expect = 8.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 114 CHNCKSEDHLVADCP 128
C+NCK H DCP
Sbjct: 351 CYNCKEPGHFSRDCP 365
>10_02_0125 - 5537541-5538758
Length = 405
Score = 26.6 bits (56), Expect = 8.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 114 CHNCKSEDHLVADCP 128
C+NCK H DCP
Sbjct: 351 CYNCKEPGHFSRDCP 365
>07_03_1689 +
28710936-28711129,28711283-28711341,28711858-28711892,
28712123-28712226,28712325-28712397,28712495-28712553,
28712656-28712721,28712815-28712898,28712995-28713059,
28713152-28713342,28713522-28713612,28714076-28714134,
28714732-28714872,28715214-28715321
Length = 442
Score = 26.6 bits (56), Expect = 8.9
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 44 LGDEEVEFECKESDKGLEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAA 103
L ++EV + + G++ R+ G C PLS R + C E AN I
Sbjct: 330 LSNKEV-IQVNQDPLGVQGRRILGQGKNGCQEVWAGPLSGNRLAVVLWNRCEESANIIVK 388
Query: 104 KCSIG 108
S+G
Sbjct: 389 LPSVG 393
>04_04_0086 - 22679233-22680450
Length = 405
Score = 26.6 bits (56), Expect = 8.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 114 CHNCKSEDHLVADCP 128
C+NCK H DCP
Sbjct: 351 CYNCKEPGHFSRDCP 365
>04_03_0151 + 11905926-11906618
Length = 230
Score = 26.6 bits (56), Expect = 8.9
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 112 KRCHNCKSEDHLVADCPI 129
+ C NC+ H +DCP+
Sbjct: 59 RSCRNCRKPGHCFSDCPL 76
>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
Length = 323
Score = 26.6 bits (56), Expect = 8.9
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 108 GPQPKRCHNCKSEDHLVADCP 128
GP P C C H DCP
Sbjct: 125 GPPPGNCFECGRAGHWARDCP 145
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.139 0.459
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,789,612
Number of Sequences: 37544
Number of extensions: 201903
Number of successful extensions: 500
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 59
length of query: 154
length of database: 14,793,348
effective HSP length: 76
effective length of query: 78
effective length of database: 11,940,004
effective search space: 931320312
effective search space used: 931320312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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