Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000377-TA|BGIBMGA000377-PA|IPR011129|Cold shock protein,
IPR001878|Zinc finger, CCHC-type, IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold
(154 letters)
Database: mosquito
2123 sequences; 516,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090823-1|BAC57921.1| 429|Anopheles gambiae gag-like protein p... 39 8e-05
AB090820-1|BAC57915.1| 527|Anopheles gambiae gag-like protein p... 36 4e-04
AB090818-1|BAC57911.1| 285|Anopheles gambiae gag-like protein p... 36 8e-04
AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein p... 32 0.009
AB090821-1|BAC57917.1| 353|Anopheles gambiae gag-like protein p... 31 0.012
AB090819-1|BAC57913.1| 400|Anopheles gambiae gag-like protein p... 31 0.012
AF387862-1|AAL56547.1| 476|Anopheles gambiae gag polyprotein pr... 31 0.016
AB090816-1|BAC57907.1| 455|Anopheles gambiae gag-like protein p... 28 0.12
AB090814-1|BAC57903.1| 499|Anopheles gambiae gag-like protein p... 25 1.4
AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein p... 24 1.9
M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein. 23 3.3
M93691-1|AAA29366.1| 574|Anopheles gambiae protein ( Anopheles ... 23 4.3
AB090824-1|BAC57923.1| 298|Anopheles gambiae gag-like protein p... 23 5.7
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal... 22 7.6
>AB090823-1|BAC57921.1| 429|Anopheles gambiae gag-like protein
protein.
Length = 429
Score = 38.7 bits (86), Expect = 8e-05
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 73 CHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKC-SIGPQPKRCHNCKSEDHLVADCPIKV 131
C S+ + I ++ RCY C E HIA +C S + K C C +E HL DC +V
Sbjct: 346 CCISNIKEAPAINLQQQRCYRCLE-RGHIARECRSPVDRQKACIRCGAEGHLAKDCNAEV 404
Query: 132 E 132
+
Sbjct: 405 K 405
Score = 27.5 bits (58), Expect = 0.20
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 106 SIGPQPKRCHNCKSEDHLVADCPIKVEKKK 135
+I Q +RC+ C H+ +C V+++K
Sbjct: 356 AINLQQQRCYRCLERGHIARECRSPVDRQK 385
>AB090820-1|BAC57915.1| 527|Anopheles gambiae gag-like protein
protein.
Length = 527
Score = 36.3 bits (80), Expect = 4e-04
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 83 KIRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVE 132
K+ + RC+ C E HIAA C+ + KRC C + H + C +V+
Sbjct: 458 KVSGQLTRCFRCLE-RGHIAATCTGEDRSKRCLRCGDQTHKASGCTNEVK 506
>AB090818-1|BAC57911.1| 285|Anopheles gambiae gag-like protein
protein.
Length = 285
Score = 35.5 bits (78), Expect = 8e-04
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDH 122
R+ +CY C E+ H AA+C + +CH C + H
Sbjct: 210 RRRQCYRCYEYG-HTAARCHGKDRSSKCHRCAEDKH 244
>AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein
protein.
Length = 541
Score = 31.9 bits (69), Expect = 0.009
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 79 RPLSKIRFRKIRCYNCGEFANHIAAKC-SIGPQPKRCHNCKSEDHLVADC 127
R + K + RCY C E H+A C S + + C C SE H DC
Sbjct: 465 RGVEKAAPERQRCYRCLE-RGHLAHACRSSTDRQQLCIRCGSEGHKARDC 513
Score = 23.8 bits (49), Expect = 2.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 109 PQPKRCHNCKSEDHLVADCPIKVEKKK 135
P+ +RC+ C HL C ++++
Sbjct: 472 PERQRCYRCLERGHLAHACRSSTDRQQ 498
>AB090821-1|BAC57917.1| 353|Anopheles gambiae gag-like protein
protein.
Length = 353
Score = 31.5 bits (68), Expect = 0.012
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 89 IRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
+RC+ C E H A C+ + C +C + DH A C
Sbjct: 289 VRCFRCLE-RGHTTADCAGEDRSSLCLHCGAADHRAASC 326
>AB090819-1|BAC57913.1| 400|Anopheles gambiae gag-like protein
protein.
Length = 400
Score = 31.5 bits (68), Expect = 0.012
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 88 KIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCP 128
+++C+ C + H +C+ + K C C E H + +CP
Sbjct: 327 QVKCFKCWKLG-HKGFECTGQDRSKLCIKCGQEGHKIRECP 366
>AF387862-1|AAL56547.1| 476|Anopheles gambiae gag polyprotein
protein.
Length = 476
Score = 31.1 bits (67), Expect = 0.016
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 107 IGPQPK-RCHNCKSEDHLVADCPIK 130
+GP+ K CH C+ H+ DCP++
Sbjct: 196 VGPEKKITCHRCRKPGHMKRDCPME 220
>AB090816-1|BAC57907.1| 455|Anopheles gambiae gag-like protein
protein.
Length = 455
Score = 28.3 bits (60), Expect = 0.12
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEKKK 135
RK+R C + I + +RC+ C HL DC V++++
Sbjct: 366 RKLRLCGC---ISSIMEAMPVSVDRQRCYRCLERGHLARDCQSPVDRQQ 411
>AB090814-1|BAC57903.1| 499|Anopheles gambiae gag-like protein
protein.
Length = 499
Score = 24.6 bits (51), Expect = 1.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 112 KRCHNCKSEDHLVADC 127
+RC+ C DH+ DC
Sbjct: 429 RRCYRCWQTDHISQDC 444
>AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein
protein.
Length = 724
Score = 24.2 bits (50), Expect = 1.9
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 88 KIRCYNCGEFANHIAAKC-SIGPQPKRCHNCKSEDHLVADC 127
++RCY C E H A C S + C C H+ C
Sbjct: 659 RVRCYRCLEL-GHWAHDCRSPDDRQNMCIRCGVVGHMAKVC 698
>M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein.
Length = 613
Score = 23.4 bits (48), Expect = 3.3
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 109 PQPK---RCHNCKSEDHLVADCPIKVEKK 134
P PK RC+ C H DC V+++
Sbjct: 543 PTPKEHLRCYRCLEHGHNARDCRSPVDRQ 571
>M93691-1|AAA29366.1| 574|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 574
Score = 23.0 bits (47), Expect = 4.3
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 78 RRPLSKIR-FRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
R P+ R ++ + C + + + A P+ +RC C H+ ++C
Sbjct: 472 RLPVKSARQLEGLKLFLC-DCVSKVRAAPPTPPERQRCFRCLEMGHIASNC 521
>AB090824-1|BAC57923.1| 298|Anopheles gambiae gag-like protein
protein.
Length = 298
Score = 22.6 bits (46), Expect = 5.7
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 110 QPKRCHNCKSEDHLVADC 127
+ +RC C H+V +C
Sbjct: 232 ESRRCFRCLERGHMVREC 249
>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
growth factor receptorprotein.
Length = 1433
Score = 22.2 bits (45), Expect = 7.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 47 EEVEFECKESDKGLEATRVTGPNGTDCHG 75
E+ E EC + E TR+ P +C G
Sbjct: 666 EQCEDECPQDFYANEETRICLPCHQECRG 694
Database: mosquito
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 516,269
Number of sequences in database: 2123
Lambda K H
0.320 0.139 0.459
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,722
Number of Sequences: 2123
Number of extensions: 6797
Number of successful extensions: 21
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 16
length of query: 154
length of database: 516,269
effective HSP length: 59
effective length of query: 95
effective length of database: 391,012
effective search space: 37146140
effective search space used: 37146140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)
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