Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000377-TA|BGIBMGA000377-PA|IPR011129|Cold shock protein,
IPR001878|Zinc finger, CCHC-type, IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold
(154 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 212 2e-55
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 212 2e-55
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 212 2e-55
U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein ... 70 1e-12
AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p pro... 69 2e-12
AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA... 69 2e-12
AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p pro... 40 0.001
AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB... 40 0.001
AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA... 40 0.001
Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia poly... 37 0.014
AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p pro... 35 0.056
AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p pro... 35 0.056
AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA... 35 0.056
AY052115-1|AAK93539.1| 1358|Drosophila melanogaster SD06557p pro... 33 0.22
AE014296-2810|AAF49404.2| 1734|Drosophila melanogaster CG9715-PA... 33 0.22
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 32 0.30
U23420-1|AAB03640.1| 1607|Drosophila melanogaster unknown protein. 32 0.39
BT021327-1|AAX33475.1| 145|Drosophila melanogaster RE04396p pro... 32 0.39
BT015282-1|AAT94511.1| 1250|Drosophila melanogaster LD04601p pro... 29 3.7
AY061470-1|AAL29018.1| 574|Drosophila melanogaster LD43674p pro... 29 3.7
AF255733-1|AAF71288.1| 1250|Drosophila melanogaster DNA topoisom... 29 3.7
AE014297-4306|AAF56845.2| 574|Drosophila melanogaster CG1420-PA... 29 3.7
AE014134-3114|AAF53813.2| 1250|Drosophila melanogaster CG10123-P... 29 3.7
X07656-1|CAA30502.1| 273|Drosophila melanogaster protein ( Dros... 28 4.8
AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like pro... 28 4.8
BT001285-1|AAN71041.1| 571|Drosophila melanogaster AT08590p pro... 28 6.4
AY069514-1|AAL39659.1| 532|Drosophila melanogaster LD23434p pro... 28 6.4
AF132177-1|AAD34765.1| 1231|Drosophila melanogaster unknown prot... 28 6.4
AE014296-2858|AAN11728.1| 532|Drosophila melanogaster CG6664-PC... 28 6.4
AE014296-2857|AAN11727.1| 532|Drosophila melanogaster CG6664-PB... 28 6.4
AE014296-2856|AAF49384.1| 532|Drosophila melanogaster CG6664-PA... 28 6.4
AE014296-2855|AAN11729.2| 571|Drosophila melanogaster CG6664-PD... 28 6.4
AE013599-3813|AAF47162.1| 1231|Drosophila melanogaster CG3231-PA... 28 6.4
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 212 bits (517), Expect = 2e-55
Identities = 90/131 (68%), Positives = 108/131 (82%), Gaps = 1/131 (0%)
Query: 1 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 59
G R G+CKWFNVAKGWGF+TP+DGGQ+VFVHQSV+QM GFRSLG+ EEVEFEC+ + +G
Sbjct: 36 GCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRG 95
Query: 60 LEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKS 119
LEATRV+ +G C GS RP R R++RCYNCGEFANHIA++C++GPQPKRCH C+
Sbjct: 96 LEATRVSSRHGGSCQGSTYRPRINRRTRRMRCYNCGEFANHIASECALGPQPKRCHRCRG 155
Query: 120 EDHLVADCPIK 130
EDHL ADCP K
Sbjct: 156 EDHLHADCPHK 166
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 212 bits (517), Expect = 2e-55
Identities = 90/131 (68%), Positives = 108/131 (82%), Gaps = 1/131 (0%)
Query: 1 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 59
G R G+CKWFNVAKGWGF+TP+DGGQ+VFVHQSV+QM GFRSLG+ EEVEFEC+ + +G
Sbjct: 36 GCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRG 95
Query: 60 LEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKS 119
LEATRV+ +G C GS RP R R++RCYNCGEFANHIA++C++GPQPKRCH C+
Sbjct: 96 LEATRVSSRHGGSCQGSTYRPRINRRTRRMRCYNCGEFANHIASECALGPQPKRCHRCRG 155
Query: 120 EDHLVADCPIK 130
EDHL ADCP K
Sbjct: 156 EDHLHADCPHK 166
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 212 bits (517), Expect = 2e-55
Identities = 90/131 (68%), Positives = 108/131 (82%), Gaps = 1/131 (0%)
Query: 1 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKESDKG 59
G R G+CKWFNVAKGWGF+TP+DGGQ+VFVHQSV+QM GFRSLG+ EEVEFEC+ + +G
Sbjct: 36 GCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRG 95
Query: 60 LEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKS 119
LEATRV+ +G C GS RP R R++RCYNCGEFANHIA++C++GPQPKRCH C+
Sbjct: 96 LEATRVSSRHGGSCQGSTYRPRINRRTRRMRCYNCGEFANHIASECALGPQPKRCHRCRG 155
Query: 120 EDHLVADCPIK 130
EDHL ADCP K
Sbjct: 156 EDHLHADCPHK 166
>U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein
protein.
Length = 359
Score = 70.1 bits (164), Expect = 1e-12
Identities = 40/89 (44%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 3 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL---QMPGFRSLGD-EEVEFECKESDK 58
K G KWFNV G+GFI +D +DVFVHQS + RS+GD E VEF+ +K
Sbjct: 62 KVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIANNPKKAVRSVGDGEVVEFDVVIGEK 121
Query: 59 GLEATRVTGPNGTDCHGSDRRPLSKIRFR 87
G EA VTGP+G GS + FR
Sbjct: 122 GNEAANVTGPSGEPVRGSQFAADKRRNFR 150
>AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p
protein.
Length = 352
Score = 69.3 bits (162), Expect = 2e-12
Identities = 40/90 (44%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 3 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL----QMPGFRSLGD-EEVEFECKESD 57
K G KWFNV G+GFI +D +DVFVHQS + RS+GD E VEF+ +
Sbjct: 61 KVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGE 120
Query: 58 KGLEATRVTGPNGTDCHGSDRRPLSKIRFR 87
KG EA VTGP+G GS + FR
Sbjct: 121 KGNEAANVTGPSGEPVRGSQFAADKRRNFR 150
>AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA
protein.
Length = 352
Score = 69.3 bits (162), Expect = 2e-12
Identities = 40/90 (44%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 3 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL----QMPGFRSLGD-EEVEFECKESD 57
K G KWFNV G+GFI +D +DVFVHQS + RS+GD E VEF+ +
Sbjct: 61 KVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGE 120
Query: 58 KGLEATRVTGPNGTDCHGSDRRPLSKIRFR 87
KG EA VTGP+G GS + FR
Sbjct: 121 KGNEAANVTGPSGEPVRGSQFAADKRRNFR 150
>AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p
protein.
Length = 143
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 6 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDE 47
G K F+ KG GFITP+ GG+DVF H S ++ GDE
Sbjct: 57 GMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMPGDE 98
>AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB,
isoform B protein.
Length = 143
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 6 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDE 47
G K F+ KG GFITP+ GG+DVF H S ++ GDE
Sbjct: 57 GMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMPGDE 98
>AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA,
isoform A protein.
Length = 143
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 6 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDE 47
G K F+ KG GFITP+ GG+DVF H S ++ GDE
Sbjct: 57 GMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGEYVPMPGDE 98
>Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia
polyprotein protein.
Length = 1333
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEKKK 135
C+NCG H C++ P +C +C E H+ + CP KV +
Sbjct: 268 CFNCGS-REHKRKDCTL---PTKCFSCNQEGHISSKCPEKVNSMR 308
>AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p
protein.
Length = 165
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEKK 134
RCY C HI+ C+ P C+ C H V +CP V ++
Sbjct: 76 RCYRCNGIG-HISKDCTQADNPT-CYRCNKTGHWVRNCPEAVNER 118
Score = 34.3 bits (75), Expect = 0.073
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 84 IRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
+R + +CY C +F H A C + +RC+ C H+ DC
Sbjct: 50 MRRNREKCYKCNQFG-HFARACP--EEAERCYRCNGIGHISKDC 90
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 89 IRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIK 130
+ CY C HI+ C K C+ C HL +C K
Sbjct: 123 VSCYKCNR-TGHISKNCP--ETSKTCYGCGKSGHLRRECDEK 161
>AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p
protein.
Length = 165
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEKK 134
RCY C HI+ C+ P C+ C H V +CP V ++
Sbjct: 76 RCYRCNGIG-HISKDCTQADNPT-CYRCNKTGHWVRNCPEAVNER 118
Score = 34.3 bits (75), Expect = 0.073
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 84 IRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
+R + +CY C +F H A C + +RC+ C H+ DC
Sbjct: 50 MRRNREKCYKCNQFG-HFARACP--EEAERCYRCNGIGHISKDC 90
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 89 IRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIK 130
+ CY C HI+ C K C+ C HL +C K
Sbjct: 123 VSCYKCNR-TGHISKNCP--ETSKTCYGCGKSGHLRRECDEK 161
>AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA
protein.
Length = 165
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEKK 134
RCY C HI+ C+ P C+ C H V +CP V ++
Sbjct: 76 RCYRCNGIG-HISKDCTQADNPT-CYRCNKTGHWVRNCPEAVNER 118
Score = 34.3 bits (75), Expect = 0.073
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 84 IRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
+R + +CY C +F H A C + +RC+ C H+ DC
Sbjct: 50 MRRNREKCYKCNQFG-HFARACP--EEAERCYRCNGIGHISKDC 90
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 89 IRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIK 130
+ CY C HI+ C K C+ C HL +C K
Sbjct: 123 VSCYKCNR-TGHISKNCP--ETSKTCYGCGKSGHLRRECDEK 161
>AY052115-1|AAK93539.1| 1358|Drosophila melanogaster SD06557p
protein.
Length = 1358
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 76 SDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCP 128
+DR P+++ R +C NC E H+ +KC +P C C + H CP
Sbjct: 463 ADRCPVARPRSHA-KCSNCFEMG-HVRSKCPRPRKPLVCFICGTMGHAEPRCP 513
>AE014296-2810|AAF49404.2| 1734|Drosophila melanogaster CG9715-PA
protein.
Length = 1734
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 76 SDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCP 128
+DR P+++ R +C NC E H+ +KC +P C C + H CP
Sbjct: 839 ADRCPVARPRSHA-KCSNCFEMG-HVRSKCPRPRKPLVCFICGTMGHAEPRCP 889
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 89 IRCYNCGEFANHIAAKCSIGP-QPKRCHNCKSEDHLVADCPIK 130
IRC NC H A C +P C+ C HLVA CP +
Sbjct: 354 IRCANCNS-RGHKADICKKPKREPGSCYACGQLGHLVAQCPTR 395
>U23420-1|AAB03640.1| 1607|Drosophila melanogaster unknown protein.
Length = 1607
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 52 ECKESDKGLEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCGEF-ANHIAAKCSIGPQ 110
E E + +A R + D H P + + + C +F A IA++
Sbjct: 152 EAFELTRSTQARRAATTHHADTHPRREEPKCTSCQQNHQLFKCPQFIALDIASRRDFLKS 211
Query: 111 PKRCHNCKSEDHLVADC 127
K C NC S H+V +C
Sbjct: 212 RKLCFNCLSPAHMVGNC 228
>BT021327-1|AAX33475.1| 145|Drosophila melanogaster RE04396p
protein.
Length = 145
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIK 130
+K C NCG + NH + KC + C NC HL C +K
Sbjct: 21 QKKACTNCG-WRNHNSDKCKY--KGYDCRNCGKRGHLTTVCKLK 61
>BT015282-1|AAT94511.1| 1250|Drosophila melanogaster LD04601p protein.
Length = 1250
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 106 SIGPQPKRCHNCKSEDHLVADCPIKVE 132
S GP+ +RC C+ E H CP K E
Sbjct: 1221 SDGPKTRRCGLCRKEGHTRNKCPRKDE 1247
>AY061470-1|AAL29018.1| 574|Drosophila melanogaster LD43674p
protein.
Length = 574
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 85 RFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKS----EDHLVADCPIKVEKKKD 136
+FRK C NCG H C P+ + +S ++HLV + + ++K+D
Sbjct: 112 KFRKGACENCGA-VTHKRKDCLERPRKVQAKYAESIVVHDEHLVNEAAVNYDEKRD 166
>AF255733-1|AAF71288.1| 1250|Drosophila melanogaster DNA topoisomerase
III alpha protein.
Length = 1250
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 106 SIGPQPKRCHNCKSEDHLVADCPIKVE 132
S GP+ +RC C+ E H CP K E
Sbjct: 1221 SDGPKTRRCGLCRKEGHTRNKCPRKDE 1247
>AE014297-4306|AAF56845.2| 574|Drosophila melanogaster CG1420-PA
protein.
Length = 574
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 85 RFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKS----EDHLVADCPIKVEKKKD 136
+FRK C NCG H C P+ + +S ++HLV + + ++K+D
Sbjct: 112 KFRKGACENCGA-VTHKRKDCLERPRKVQAKYAESIVVHDEHLVNEAAVNYDEKRD 166
>AE014134-3114|AAF53813.2| 1250|Drosophila melanogaster CG10123-PA
protein.
Length = 1250
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 106 SIGPQPKRCHNCKSEDHLVADCPIKVE 132
S GP+ +RC C+ E H CP K E
Sbjct: 1221 SDGPKTRRCGLCRKEGHTRNKCPRKDE 1247
>X07656-1|CAA30502.1| 273|Drosophila melanogaster protein (
Drosophila melanogasterretrotransposon 1731 sequence. ).
Length = 273
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 54 KESDKGLEATRV-TGPNGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKC 105
++ +K E+ + T + + RP +K R + + CYNCGE H A C
Sbjct: 189 QQREKQTESAKAFTAVHKPQAPAREARPSAKKR-KDVVCYNCGE-RRHFKANC 239
>AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like
protein protein.
Length = 488
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
R IRC+ C EF H A C + C C H C
Sbjct: 405 RPIRCFRCLEF-GHRAPYCKSVDRSDCCLRCGEHGHKAKGC 444
>BT001285-1|AAN71041.1| 571|Drosophila melanogaster AT08590p
protein.
Length = 571
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 76 SDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGP 109
S RPLS + RCY CG+ N A++ I P
Sbjct: 390 SSSRPLSPGTAVQNRCYACGQLVNRRASERFIKP 423
>AY069514-1|AAL39659.1| 532|Drosophila melanogaster LD23434p
protein.
Length = 532
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 76 SDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGP 109
S RPLS + RCY CG+ N A++ I P
Sbjct: 351 SSSRPLSPGTAVQNRCYACGQLVNRRASERFIKP 384
>AF132177-1|AAD34765.1| 1231|Drosophila melanogaster unknown
protein.
Length = 1231
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 109 PQPKRCHNCKSEDHLVADCPIKVEKKKDE 137
P RC+ CK H + +CP K + E
Sbjct: 148 PASYRCNKCKKSGHWIKNCPFVGGKDQQE 176
>AE014296-2858|AAN11728.1| 532|Drosophila melanogaster CG6664-PC,
isoform C protein.
Length = 532
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 76 SDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGP 109
S RPLS + RCY CG+ N A++ I P
Sbjct: 351 SSSRPLSPGTAVQNRCYACGQLVNRRASERFIKP 384
>AE014296-2857|AAN11727.1| 532|Drosophila melanogaster CG6664-PB,
isoform B protein.
Length = 532
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 76 SDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGP 109
S RPLS + RCY CG+ N A++ I P
Sbjct: 351 SSSRPLSPGTAVQNRCYACGQLVNRRASERFIKP 384
>AE014296-2856|AAF49384.1| 532|Drosophila melanogaster CG6664-PA,
isoform A protein.
Length = 532
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 76 SDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGP 109
S RPLS + RCY CG+ N A++ I P
Sbjct: 351 SSSRPLSPGTAVQNRCYACGQLVNRRASERFIKP 384
>AE014296-2855|AAN11729.2| 571|Drosophila melanogaster CG6664-PD,
isoform D protein.
Length = 571
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 76 SDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGP 109
S RPLS + RCY CG+ N A++ I P
Sbjct: 390 SSSRPLSPGTAVQNRCYACGQLVNRRASERFIKP 423
>AE013599-3813|AAF47162.1| 1231|Drosophila melanogaster CG3231-PA
protein.
Length = 1231
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 109 PQPKRCHNCKSEDHLVADCPIKVEKKKDE 137
P RC+ CK H + +CP K + E
Sbjct: 148 PASYRCNKCKKSGHWIKNCPFVGGKDQQE 176
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.320 0.139 0.459
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,872,501
Number of Sequences: 52641
Number of extensions: 334861
Number of successful extensions: 647
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 50
length of query: 154
length of database: 24,830,863
effective HSP length: 79
effective length of query: 75
effective length of database: 20,672,224
effective search space: 1550416800
effective search space used: 1550416800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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