Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000377-TA|BGIBMGA000377-PA|IPR011129|Cold shock protein,
IPR001878|Zinc finger, CCHC-type, IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold
(154 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 114 2e-26
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 114 2e-26
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 114 2e-26
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 114 2e-26
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 74 4e-14
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 73 1e-13
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 67 4e-12
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 55 3e-08
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 55 3e-08
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 43 1e-04
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 36 0.010
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 36 0.010
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 33 0.068
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 33 0.068
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 33 0.068
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 33 0.068
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 33 0.068
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 33 0.068
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 30 0.83
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 30 0.83
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 28 3.4
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 28 3.4
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 28 3.4
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 28 3.4
AL117204-21|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 3.4
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 3.4
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 28 3.4
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 27 4.4
AC024756-5|AAK29880.3| 414|Caenorhabditis elegans Hypothetical ... 27 4.4
Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical pr... 27 5.9
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 114 bits (275), Expect = 2e-26
Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 6 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKE--SDKGLEA 62
G CKWFNV+KG+GF+ D G+D+FVHQS L M GFRSL + E V + +E + KG EA
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKGREA 83
Query: 63 TRVTGP-NGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKC-SIGPQPKRCHNCKSE 120
V+G G GS PL + + +RC+ CG+FA H A C ++ K C+ C SE
Sbjct: 84 YAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSE 143
Query: 121 DHLVADCPIKVEKKKDE 137
+H+ + CP + K + E
Sbjct: 144 EHVSSICPERRRKHRPE 160
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 114 bits (275), Expect = 2e-26
Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 6 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKE--SDKGLEA 62
G CKWFNV+KG+GF+ D G+D+FVHQS L M GFRSL + E V + +E + KG EA
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKGREA 114
Query: 63 TRVTGP-NGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKC-SIGPQPKRCHNCKSE 120
V+G G GS PL + + +RC+ CG+FA H A C ++ K C+ C SE
Sbjct: 115 YAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSE 174
Query: 121 DHLVADCPIKVEKKKDE 137
+H+ + CP + K + E
Sbjct: 175 EHVSSICPERRRKHRPE 191
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 114 bits (275), Expect = 2e-26
Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 6 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKE--SDKGLEA 62
G CKWFNV+KG+GF+ D G+D+FVHQS L M GFRSL + E V + +E + KG EA
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKGREA 114
Query: 63 TRVTGP-NGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKC-SIGPQPKRCHNCKSE 120
V+G G GS PL + + +RC+ CG+FA H A C ++ K C+ C SE
Sbjct: 115 YAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSE 174
Query: 121 DHLVADCPIKVEKKKDE 137
+H+ + CP + K + E
Sbjct: 175 EHVSSICPERRRKHRPE 191
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 114 bits (275), Expect = 2e-26
Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 6 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGD-EEVEFECKE--SDKGLEA 62
G CKWFNV+KG+GF+ D G+D+FVHQS L M GFRSL + E V + +E + KG EA
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKGREA 114
Query: 63 TRVTGP-NGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKC-SIGPQPKRCHNCKSE 120
V+G G GS PL + + +RC+ CG+FA H A C ++ K C+ C SE
Sbjct: 115 YAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSE 174
Query: 121 DHLVADCPIKVEKKKDE 137
+H+ + CP + K + E
Sbjct: 175 EHVSSICPERRRKHRPE 191
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 74.1 bits (174), Expect = 4e-14
Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 3 KRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVL--QMPG--FRSLGD-EEVEFECKESD 57
K +G KWFNV G+GFI D +D+FVHQ+ + P RSLGD EEV F+ E
Sbjct: 20 KVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGS 79
Query: 58 KGLEATRVTGPNGTDCHGS 76
KGLEA VTGP+G GS
Sbjct: 80 KGLEAASVTGPDGGPVQGS 98
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 72.5 bits (170), Expect = 1e-13
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 5 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG-----FRSLG-DEEVEFECKESDK 58
+G+ KW++V + +GFI+ +DG +D+FVHQ+ + R+LG DEEV F+ E
Sbjct: 67 QGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKN 126
Query: 59 GLEATRVTGPNGTDCHGSDRRPLSKIRFRKIR 90
G EA VTGPNG + GS R RFRK R
Sbjct: 127 GPEAANVTGPNGDNVIGSRYRHKLLSRFRKNR 158
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 67.3 bits (157), Expect = 4e-12
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 5 RGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPG-----FRSLGD-EEVEFECKESDK 58
+G+ KW++V + +GFI+ DG +DVFVHQ+ + R+L D EEV F+ +
Sbjct: 65 QGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKN 124
Query: 59 GLEATRVTGPNGTDCHGSDRRPLSKIRFRKIR 90
G EA VTGP G + GS R RFRK R
Sbjct: 125 GPEAANVTGPAGVNVSGSKYRHQLLSRFRKNR 156
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 54.8 bits (126), Expect = 3e-08
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 5 RGRCKWFNVAKGWGFIT---PDDGGQDVFVHQSVLQMPG-----FRSLGDEE-VEFECKE 55
+G KWF+V +GF+ P D +D FVHQ+ + R+L D+E V F+ E
Sbjct: 90 KGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVE 149
Query: 56 SDKGLEATRVTGPNGTDCHGS 76
KG EA VTGP+G + GS
Sbjct: 150 GLKGPEAANVTGPDGENVRGS 170
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 54.8 bits (126), Expect = 3e-08
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 5 RGRCKWFNVAKGWGFIT---PDDGGQDVFVHQSVLQMPG-----FRSLGDEE-VEFECKE 55
+G KWF+V +GF+ P D +D FVHQ+ + R+L D+E V F+ E
Sbjct: 90 KGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVE 149
Query: 56 SDKGLEATRVTGPNGTDCHGS 76
KG EA VTGP+G + GS
Sbjct: 150 GLKGPEAANVTGPDGENVRGS 170
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 42.7 bits (96), Expect = 1e-04
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 90 RCYNCGEFANHIAAKC--SIGPQPKRCHNCKSEDHLVADCP 128
+CYNCG + HI+ +C S + KRC+ C+ H+ DCP
Sbjct: 108 KCYNCGR-SGHISRECTESGSAEEKRCYQCQETGHISRDCP 147
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 10/47 (21%)
Query: 91 CYNCGEFANHIAAKCSIGPQP---------KRCHNCKSEDHLVADCP 128
CY C + HI+ C G C+NC+ H DCP
Sbjct: 6 CYKCQQ-PGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCP 51
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 36.3 bits (80), Expect = 0.010
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 91 CYNCGEFANHIAAKCSIGPQPK-RCHNCKSEDHLVADC 127
C+NCGE HI+ +C P+ C NC+ H +DC
Sbjct: 572 CHNCGE-EGHISKECDKPKVPRFPCRNCEQLGHFASDC 608
Score = 33.1 bits (72), Expect = 0.089
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKR-CHNCKSEDHLVADC 127
C NCG H A C P+ C NC E H DC
Sbjct: 618 CRNCG-IEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654
Score = 30.3 bits (65), Expect = 0.63
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 108 GPQPKRCHNCKSEDHLVADC 127
G +P+ CHNC E H+ +C
Sbjct: 566 GERPRGCHNCGEEGHISKEC 585
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 91 CYNCGEFANHIAAKCS---IGPQPKR-CHNCKSEDHLVADCPIK 130
C NCG+ H A C + +P C C E H +CP +
Sbjct: 641 CRNCGQ-EGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTR 683
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 36.3 bits (80), Expect = 0.010
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 91 CYNCGEFANHIAAKCSIGPQPK-RCHNCKSEDHLVADC 127
C+NCGE HI+ +C P+ C NC+ H +DC
Sbjct: 572 CHNCGE-EGHISKECDKPKVPRFPCRNCEQLGHFASDC 608
Score = 33.1 bits (72), Expect = 0.089
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKR-CHNCKSEDHLVADC 127
C NCG H A C P+ C NC E H DC
Sbjct: 618 CRNCG-IEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654
Score = 30.3 bits (65), Expect = 0.63
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 108 GPQPKRCHNCKSEDHLVADC 127
G +P+ CHNC E H+ +C
Sbjct: 566 GERPRGCHNCGEEGHISKEC 585
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 91 CYNCGEFANHIAAKCS---IGPQPKR-CHNCKSEDHLVADCPIK 130
C NCG+ H A C + +P C C E H +CP +
Sbjct: 641 CRNCGQ-EGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTR 683
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 33.5 bits (73), Expect = 0.068
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 89 IRCYNC-GEFANHIAAKCSIGPQPKR-CHNCKSEDHLVADCP 128
++C+NC GE H +A+C P+P R C NC + H +CP
Sbjct: 242 MKCFNCKGE--GHRSAEC---PEPPRGCFNCGEQGHRSNECP 278
Score = 30.7 bits (66), Expect = 0.48
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 111 PKRCHNCKSEDHLVADCP 128
P +C NCK E H A+CP
Sbjct: 241 PMKCFNCKGEGHRSAECP 258
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGP---QPKRCHNCKSEDHLVADC 127
R C+NC + H ++ C +P+ C+NC+ H +C
Sbjct: 156 RNNNCFNCQQ-PGHRSSDCPEPRKEREPRVCYNCQQPGHTSREC 198
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.068
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 89 IRCYNC-GEFANHIAAKCSIGPQPKR-CHNCKSEDHLVADCP 128
++C+NC GE H +A+C P+P R C NC + H +CP
Sbjct: 453 MKCFNCKGE--GHRSAEC---PEPPRGCFNCGEQGHRSNECP 489
Score = 30.7 bits (66), Expect = 0.48
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 111 PKRCHNCKSEDHLVADCP 128
P +C NCK E H A+CP
Sbjct: 452 PMKCFNCKGEGHRSAECP 469
Score = 30.3 bits (65), Expect = 0.63
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGPQPKR------CHNCKSEDHLVADCP 128
R C+NC + H + C P+PK+ C+NC+ H DCP
Sbjct: 255 RNNNCFNCQQ-PGHRSNDC---PEPKKEREPRVCYNCQQPGHNSRDCP 298
Score = 30.3 bits (65), Expect = 0.63
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGPQPKR------CHNCKSEDHLVADCP 128
R C+NC + H + C P+PK+ C+NC+ H DCP
Sbjct: 369 RNNNCFNCQQ-PGHRSNDC---PEPKKEREPRVCYNCQQPGHNSRDCP 412
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.068
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 89 IRCYNC-GEFANHIAAKCSIGPQPKR-CHNCKSEDHLVADCP 128
++C+NC GE H +A+C P+P R C NC + H +CP
Sbjct: 453 MKCFNCKGE--GHRSAEC---PEPPRGCFNCGEQGHRSNECP 489
Score = 30.7 bits (66), Expect = 0.48
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 111 PKRCHNCKSEDHLVADCP 128
P +C NCK E H A+CP
Sbjct: 452 PMKCFNCKGEGHRSAECP 469
Score = 30.3 bits (65), Expect = 0.63
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGPQPKR------CHNCKSEDHLVADCP 128
R C+NC + H + C P+PK+ C+NC+ H DCP
Sbjct: 255 RNNNCFNCQQ-PGHRSNDC---PEPKKEREPRVCYNCQQPGHNSRDCP 298
Score = 30.3 bits (65), Expect = 0.63
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGPQPKR------CHNCKSEDHLVADCP 128
R C+NC + H + C P+PK+ C+NC+ H DCP
Sbjct: 369 RNNNCFNCQQ-PGHRSNDC---PEPKKEREPRVCYNCQQPGHNSRDCP 412
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 33.5 bits (73), Expect = 0.068
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 89 IRCYNC-GEFANHIAAKCSIGPQPKR-CHNCKSEDHLVADCP 128
++C+NC GE H +A+C P+P R C NC + H +CP
Sbjct: 242 MKCFNCKGE--GHRSAEC---PEPPRGCFNCGEQGHRSNECP 278
Score = 30.7 bits (66), Expect = 0.48
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 111 PKRCHNCKSEDHLVADCP 128
P +C NCK E H A+CP
Sbjct: 241 PMKCFNCKGEGHRSAECP 258
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGP---QPKRCHNCKSEDHLVADC 127
R C+NC + H ++ C +P+ C+NC+ H +C
Sbjct: 156 RNNNCFNCQQ-PGHRSSDCPEPRKEREPRVCYNCQQPGHTSREC 198
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 33.5 bits (73), Expect = 0.068
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 89 IRCYNC-GEFANHIAAKCSIGPQPKR-CHNCKSEDHLVADCP 128
++C+NC GE H +A+C P+P R C NC + H +CP
Sbjct: 242 MKCFNCKGE--GHRSAEC---PEPPRGCFNCGEQGHRSNECP 278
Score = 30.7 bits (66), Expect = 0.48
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 111 PKRCHNCKSEDHLVADCP 128
P +C NCK E H A+CP
Sbjct: 241 PMKCFNCKGEGHRSAECP 258
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGP---QPKRCHNCKSEDHLVADC 127
R C+NC + H ++ C +P+ C+NC+ H +C
Sbjct: 156 RNNNCFNCQQ-PGHRSSDCPEPRKEREPRVCYNCQQPGHTSREC 198
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.068
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 89 IRCYNC-GEFANHIAAKCSIGPQPKR-CHNCKSEDHLVADCP 128
++C+NC GE H +A+C P+P R C NC + H +CP
Sbjct: 453 MKCFNCKGE--GHRSAEC---PEPPRGCFNCGEQGHRSNECP 489
Score = 30.7 bits (66), Expect = 0.48
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 111 PKRCHNCKSEDHLVADCP 128
P +C NCK E H A+CP
Sbjct: 452 PMKCFNCKGEGHRSAECP 469
Score = 30.3 bits (65), Expect = 0.63
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGPQPKR------CHNCKSEDHLVADCP 128
R C+NC + H + C P+PK+ C+NC+ H DCP
Sbjct: 255 RNNNCFNCQQ-PGHRSNDC---PEPKKEREPRVCYNCQQPGHNSRDCP 298
Score = 30.3 bits (65), Expect = 0.63
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGPQPKR------CHNCKSEDHLVADCP 128
R C+NC + H + C P+PK+ C+NC+ H DCP
Sbjct: 369 RNNNCFNCQQ-PGHRSNDC---PEPKKEREPRVCYNCQQPGHNSRDCP 412
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 29.9 bits (64), Expect = 0.83
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 112 KRCHNCKSEDHLVADCPIKVEKKKDE 137
+ C +CK DH CP KV + DE
Sbjct: 119 EHCRHCKGNDHWSTHCPYKVMYQLDE 144
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 97 FANHIAAKCSIGPQP--KRCHNCKSEDHLVADCPIKVEKKK 135
+ + + KC+ G P ++CH C H V CP + K+
Sbjct: 1338 YQHQLLRKCNQGSAPTDRQCHQCHRIGHFVESCPQRALAKE 1378
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 27.9 bits (59), Expect = 3.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 111 PKRCHNCKSEDHLVADCP 128
P RC C+S++H CP
Sbjct: 81 PNRCFRCQSDEHRTPQCP 98
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 31 VHQSVLQMPGFRSLG 45
VHQSV QMPG+ S G
Sbjct: 1232 VHQSVYQMPGYESYG 1246
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 31 VHQSVLQMPGFRSLG 45
VHQSV QMPG+ S G
Sbjct: 1246 VHQSVYQMPGYESYG 1260
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 27.9 bits (59), Expect = 3.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 111 PKRCHNCKSEDHLVADCP 128
P RC C+S++H CP
Sbjct: 81 PNRCFRCQSDEHRTPQCP 98
>AL117204-21|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPK---RCHNCKSEDHLVADC 127
RC NCG H + +C P +C NC + H+ DC
Sbjct: 429 RCSNCGS-DEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 70 GTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKC 105
G+D H S P + +I+C NCG F HI+ C
Sbjct: 434 GSDEHKSWECPDAPNVTNQIKCTNCGAF-GHISKDC 468
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPK---RCHNCKSEDHLVADC 127
RC NCG H + +C P +C NC + H+ DC
Sbjct: 429 RCSNCGS-DEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 70 GTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKC 105
G+D H S P + +I+C NCG F HI+ C
Sbjct: 434 GSDEHKSWECPDAPNVTNQIKCTNCGAF-GHISKDC 468
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLV 124
C+ C + H +KCS +P+ C++CK H V
Sbjct: 348 CFGCLR-SGHQRSKCS---RPRTCNHCKGNHHTV 377
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 46 DEEVEFECKESDKGLEATRVTGPNGTDCHGSDRR 79
DEE E + + E + TG N T C+G +R+
Sbjct: 36 DEECRHEEDKDESNTENLKNTGENATACNGINRK 69
>AC024756-5|AAK29880.3| 414|Caenorhabditis elegans Hypothetical
protein Y34D9A.7 protein.
Length = 414
Score = 27.5 bits (58), Expect = 4.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 114 CHNCKSEDHLVADCP 128
C NC+ DH +A CP
Sbjct: 86 CFNCRGGDHSIAQCP 100
>Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical
protein D2085.4 protein.
Length = 1001
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 29 VFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRVTGPNGT 71
+F H LQ R L + +++F SD GL PNG+
Sbjct: 782 IFKHLKALQKMNNRELDELQLDFSVVTSDMGLVRNVNLKPNGS 824
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.139 0.459
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,962,339
Number of Sequences: 27539
Number of extensions: 169119
Number of successful extensions: 379
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 68
length of query: 154
length of database: 12,573,161
effective HSP length: 76
effective length of query: 78
effective length of database: 10,480,197
effective search space: 817455366
effective search space used: 817455366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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