Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000377-TA|BGIBMGA000377-PA|IPR011129|Cold shock protein,
IPR001878|Zinc finger, CCHC-type, IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold
(154 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 84 5e-17
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 83 6e-17
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 82 1e-16
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 82 1e-16
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 37 0.007
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 37 0.007
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 37 0.007
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 36 0.016
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 36 0.016
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 36 0.016
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 33 0.11
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 32 0.20
At5g47940.1 68418.m05922 expressed protein 29 1.1
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 29 1.1
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 29 1.1
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 29 1.4
At5g42280.1 68418.m05146 DC1 domain-containing protein contains ... 29 1.8
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 29 1.8
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 28 2.4
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 28 2.4
At5g58530.1 68418.m07329 glutaredoxin family protein 27 4.3
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 27 5.6
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t... 27 5.6
At1g32800.1 68414.m04043 PHD finger protein-related contains low... 27 5.6
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote... 27 7.4
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 27 7.4
At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovin... 27 7.4
At4g14700.1 68417.m02259 replication control protein, putative s... 27 7.4
At3g24680.1 68416.m03099 zinc finger protein, putative identical... 27 7.4
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ... 26 9.8
At2g15520.1 68415.m01776 zinc finger protein, putative strong si... 26 9.8
At1g02900.1 68414.m00257 rapid alkalinization factor (RALF) fami... 26 9.8
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 83.8 bits (198), Expect = 5e-17
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Query: 1 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEE-VEFECK-ESDK 58
G +R+G KWF+ KG+GFITPDDGG D+FVHQS ++ GFRSL EE VEFE + +++
Sbjct: 8 GERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNN 67
Query: 59 GLEATRVTGPNGTDCHGS 76
+A V+GP+G G+
Sbjct: 68 RPKAIDVSGPDGAPVQGN 85
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 83.4 bits (197), Expect = 6e-17
Identities = 52/136 (38%), Positives = 68/136 (50%), Gaps = 15/136 (11%)
Query: 6 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLG-DEEVEFECKE-SDKGLEAT 63
G+ WFN +KG+GFITPDDG ++FVHQS + G+RSL + VEF + SD +A
Sbjct: 13 GKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKTKAV 72
Query: 64 RVTGPNGTDC--HGSDRRPLSKIRFRKIRCYNCGEFANHIAAKCSI------GPQPKR-- 113
VT P G + R ++ CYNCGE HI+ C I G + R
Sbjct: 73 NVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGEL-GHISKDCGIGGGGGGGERRSRGG 131
Query: 114 --CHNCKSEDHLVADC 127
C+NC H DC
Sbjct: 132 EGCYNCGDTGHFARDC 147
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKR-CHNCKSEDHLVADC 127
CY+CG HIA C+ QP R C+ C HL DC
Sbjct: 232 CYSCGG-VGHIARDCATKRQPSRGCYQCGGSGHLARDC 268
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 91 CYNCGEFANHIAAKCSI-----GPQPKRCHNCKSEDHLVADC 127
CY CG + H+A C G C+ C E H +C
Sbjct: 255 CYQCGG-SGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 13/53 (24%)
Query: 91 CYNCGEFANHIAAKC---SIGPQPKR---------CHNCKSEDHLVADCPIKV 131
CY CG+ H+A C S+G +R C+ C H DC KV
Sbjct: 166 CYTCGD-VGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKV 217
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 82.2 bits (194), Expect = 1e-16
Identities = 39/78 (50%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Query: 1 GVKRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEE-VEFECKESDKG 59
G +R+G KWF+ KG+GFITP DGG D+FVHQS ++ GFRSL EE VEF+ + + G
Sbjct: 12 GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71
Query: 60 L-EATRVTGPNGTDCHGS 76
+A V+GP+G G+
Sbjct: 72 RPKAIEVSGPDGAPVQGN 89
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 82.2 bits (194), Expect = 1e-16
Identities = 47/105 (44%), Positives = 60/105 (57%), Gaps = 7/105 (6%)
Query: 6 GRCKWFNVAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLG-DEEVEFE-CKESDKGLEAT 63
G+ WF+ KG+GFITPDDGG+++FVHQS + GFRSL E VE+E SD +A
Sbjct: 13 GKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKTKAI 72
Query: 64 RVTGPNGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIG 108
VT P G GS + + R C+NCGE H+A C G
Sbjct: 73 EVTAPGG----GSLNKKENSSRGSGGNCFNCGE-VGHMAKDCDGG 112
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 91 CYNCGEFANHIAAKCSI------GPQPKRCHNCKSEDHLVADC 127
CY CG HIA C+ G + C+ C HL DC
Sbjct: 226 CYTCGG-VGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDC 267
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 36.7 bits (81), Expect = 0.007
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEKKK 135
RC+NCG H A C+ G +C+ C H+ +C KK
Sbjct: 100 RCFNCG-VDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPKK 144
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 36.7 bits (81), Expect = 0.007
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEKKK 135
RC+NCG H A C+ G +C+ C H+ +C KK
Sbjct: 59 RCFNCG-VDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPKK 103
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 36.7 bits (81), Expect = 0.007
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 66 TGPNGTDCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVA 125
+G DC SD R +R C NC + H+AA C+ K C NC++ H+
Sbjct: 120 SGHRARDCSNSDSRA-GDLRL----CNNCFK-QGHLAADCT---NDKACKNCRTSGHIAR 170
Query: 126 DC 127
DC
Sbjct: 171 DC 172
Score = 35.1 bits (77), Expect = 0.021
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
C NCG HIAA+C+ RC NC+ H+ ++C
Sbjct: 76 CNNCG-LPGHIAAECTA---ESRCWNCREPGHVASNC 108
Score = 31.9 bits (69), Expect = 0.20
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 91 CYNCGEFANHIAAKCSIGPQP----KRCHNCKSEDHLVADC 127
C++CG+ + H A CS + C+NC + HL ADC
Sbjct: 114 CHSCGK-SGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 35.5 bits (78), Expect = 0.016
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
RC+NCG H A C+ G +C+ C H+ +C
Sbjct: 59 RCFNCG-VDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 35.5 bits (78), Expect = 0.016
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
RC+NCG H A C+ G +C+ C H+ +C
Sbjct: 70 RCFNCG-VDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 35.5 bits (78), Expect = 0.016
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 90 RCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADC 127
RC+NCG H A C+ G +C+ C H+ +C
Sbjct: 100 RCFNCG-VDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 32.7 bits (71), Expect = 0.11
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 87 RKIRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIK 130
R+ C+ CG H A +CS G C+ CK H DCP K
Sbjct: 187 RRKPCFICGSL-EHGAKQCSKGHD---CYICKKTGHRAKDCPDK 226
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 91 CYNCGEFANHIAAKC----SIGPQPKR-----CHNCKSEDHLVADCP 128
CY CGE H A +C SI R C+ C H +CP
Sbjct: 327 CYRCGE-EGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECP 372
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 99 NHIAAKCSIGPQPKR-CHNCKSEDHLVADCPIKVEKKKDE 137
N+ A S +R C+ C + HL CPIK++K D+
Sbjct: 381 NYFATTVSSSKVKRRVCYECGEKGHLSTACPIKLQKADDQ 420
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 101 IAAKCSIGPQPKR-CHNCKSEDHLVADCPIKVEKK 134
+ + S G KR C+ C + HL + CP K++K+
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSACPNKLQKQ 596
Score = 26.6 bits (56), Expect = 7.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 112 KRCHNCKSEDHLVADCPIKVE 132
+ C+ C + HL CPIK++
Sbjct: 479 RNCYECGEKGHLSTACPIKLQ 499
>At5g47940.1 68418.m05922 expressed protein
Length = 749
Score = 29.5 bits (63), Expect = 1.1
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 20 ITPDDGGQDVFVHQSVLQMPGFRSLGDEEVEFECKESDKGLEATRVTGPNGTDCHGSDRR 79
ITPDD ++ V + GDEE E SD L+ VT DC+ ++R
Sbjct: 554 ITPDDSHGTMY---GVFKKLDDSFGGDEEAETVVSVSDNALDEETVTSSTKADCY-TERE 609
Query: 80 PLSKIRFRKIRCYNCGEFANHIAAKCSIGP 109
LS + E +N AKC P
Sbjct: 610 NLSYKPTEPDSLIHELESSNVTTAKCKGEP 639
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 98 ANHIAAKCSIGPQPKRCHNCKSEDHLVADCP 128
+N++ I P RC NC + H + +CP
Sbjct: 182 SNNVEGGLEIIDDPPRCFNCGAYSHSIRECP 212
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 98 ANHIAAKCSIGPQPKRCHNCKSEDHLVADCP 128
+N++ I P RC NC + H + +CP
Sbjct: 182 SNNVEGGLEIIDDPPRCFNCGAYSHSIRECP 212
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 100 HIAAKCSIGPQPKRCHNCKSEDHLVADCPI 129
H+ A+C GP RC CKS + C I
Sbjct: 128 HVCARC-FGPAKTRCSRCKSVRYCSGKCQI 156
>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 694
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 92 YNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKV 131
Y+C ++ A CS+ P P + KS +H + PI++
Sbjct: 224 YHCSICKFYLNATCSMRPPPPTISHIKSHEHTLTLFPIRL 263
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 92 YNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKV 131
Y+C ++ +CS+ P P + KS +H++ PI++
Sbjct: 178 YHCSICKFNLNVECSMRPPPTTISHLKSHEHILTLFPIRL 217
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 89 IRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVE 132
++C G + K + + K C+NC H ++ CP +E
Sbjct: 102 LQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPME 145
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 91 CYNCGEFANHIAAKC-----SIGPQPKRCHNCKSEDHLVADCPIKVEKK 134
C+ C + HI+ C I P C C S HLV DCP K ++
Sbjct: 154 CFIC-KGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQE 201
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 99 NHIAAKCSIGPQPKR-CHNCKSEDHLVADCP 128
N + S G + +R C+ CK + H+ DCP
Sbjct: 181 NSSSKSTSKGRETRRLCYECKGKGHIARDCP 211
>At5g58530.1 68418.m07329 glutaredoxin family protein
Length = 273
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 72 DCHGSDRRPLSKIRFRKIRCYNCGEFANHIAAKCSIGPQP 111
DCHGS + K+ FR C C E + CS P
Sbjct: 234 DCHGSHKVHTEKLGFR--TCLTCNENGLVRCSSCSFPQSP 271
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 113 RCHNCKSEDHLVADCPIKVEKKKDE 137
+C C E H ADC K+++K E
Sbjct: 265 KCFLCGQEGHRAADCEGKIKRKTGE 289
>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 684
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 92 YNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEKKKD 136
Y+C ++ CS+ P P + KS +H + PI++ D
Sbjct: 220 YHCSICKFNLNLSCSMRPPPPTISHLKSHEHTLTLFPIRLPSPCD 264
>At1g32800.1 68414.m04043 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 398
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 89 IRCYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHL 123
++C +CG + + ++ G + CH CKS++++
Sbjct: 39 VKCDDCGVWVHTRCSRFVEGQELFTCHKCKSKNNV 73
>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
kinase, putative
Length = 751
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 13 VAKGWGFITPDDGGQDVFVHQSVLQMPGFRSLGDEE 48
+ G+ P+D D+ +Q Q+PGFR L ++E
Sbjct: 232 IPSGFADEIPEDATVDLSFNQLTGQIPGFRVLDNQE 267
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 107 IGPQPKRCHNCKSEDHLVADCP 128
I P RC NC H + +CP
Sbjct: 236 IDDDPPRCFNCGGYSHSLRECP 257
>At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovine,
PIR2:I46014
Length = 452
Score = 26.6 bits (56), Expect = 7.4
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 34 SVLQMPGFRSLGDEEVEFECKESDKGLEATRVTGPNGTDCHGSDRRPLSKIRFRKIRCYN 93
SV PG +L EE E E K+ + + + +D +K + +K + +
Sbjct: 7 SVWAKPGAWALEAEEHEAELKQQPSPTNQ-KSSAEDSSDFPSLAAAATTKTKKKKGQTIS 65
Query: 94 CGEFANHIAAKCSIGPQPKR 113
EFA + AK PQ +R
Sbjct: 66 LAEFATYGTAKAKPAPQTER 85
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 26.6 bits (56), Expect = 7.4
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 46 DEEVEFECKESDKGLEATRVTGPNGTD--CHGSDRRPLSKIRFRKIRCYNCGEFANHIAA 103
DEE+EF+ +ES +G+ ++ G N G ++ + +I +RC+ E A
Sbjct: 366 DEEIEFDDEESVRGVSKSKRGGANSRKGRFFGLEKVGMKRIP-EHVRCHKQSEL-EKAKA 423
Query: 104 KCSIGPQPKRCHNCKSED 121
+ +PK C+S++
Sbjct: 424 TLLLATRPKSL-PCRSKE 440
>At3g24680.1 68416.m03099 zinc finger protein, putative identical to
zinc-finger protein GI:976277 from [Arabidopsis
thaliana]
Length = 487
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 112 KRCHNCKSEDHLVADCPIKVEKKKDE 137
KRC+ C+ H CPI +++++D+
Sbjct: 203 KRCYECQRLTHEKDLCPILIKERQDK 228
>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 91 CYNCGEFANHIAAKCSIGPQPKRCHNCKSEDHLVADCPIKVEK 133
CY+C + C + P P + DH V I+ EK
Sbjct: 93 CYSCPTCEFKVDLTCGMKPSPPAIEHPLCHDHAVVFLKIREEK 135
>At2g15520.1 68415.m01776 zinc finger protein, putative strong
similarity to zinc finger protein [Arabidopsis thaliana]
GI:976277
Length = 483
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 112 KRCHNCKSEDHLVADCPIKVEKKKD 136
KRC+ C+ H CPI V+ ++D
Sbjct: 199 KRCYECQRLTHEKDVCPILVKARQD 223
>At1g02900.1 68414.m00257 rapid alkalinization factor (RALF)
family protein similar to RALF precursor [Nicotiana
tabacum] GI:16566316
Length = 120
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 56 SDKGLEATRVTGPNGTDCHGS 76
+D G A TG NG+ CHGS
Sbjct: 30 NDLGGVAWATTGDNGSGCHGS 50
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.139 0.459
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,797,454
Number of Sequences: 28952
Number of extensions: 158206
Number of successful extensions: 401
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 61
length of query: 154
length of database: 12,070,560
effective HSP length: 75
effective length of query: 79
effective length of database: 9,899,160
effective search space: 782033640
effective search space used: 782033640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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