Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000375-TA|BGIBMGA000375-PA|IPR001269|Dihydrouridine
synthase, DuS
(222 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245 129 2e-30
04_04_0603 + 26539104-26539148,26539941-26540046,26540465-265406... 96 2e-20
04_01_0100 + 1034057-1034308,1034962-1035078,1035152-1035382,103... 44 1e-04
04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562 30 1.7
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 29 2.3
05_04_0295 + 19940822-19940906,19940976-19941902,19941956-19942866 29 3.0
03_01_0059 + 484305-484617,484919-485406,485608-486092,486185-48... 29 4.0
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 5.3
12_01_0576 + 4705912-4706220,4706319-4706393,4707398-4707477,470... 28 7.0
>06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245
Length = 396
Score = 129 bits (311), Expect = 2e-30
Identities = 70/197 (35%), Positives = 111/197 (56%), Gaps = 5/197 (2%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V APMV S++ FR L R + A +TPM+ + F +N K RA EF T D P+ QF
Sbjct: 65 VVAPMVDNSELPFRMLCRRYGATGAYTPMLHSRIFSENEKHRAMEFTTCKEDRPLFVQFC 124
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
AN+ D + A+K+V PY D VD+N GCPQ+ A + YG L++ ++ +V+ L L
Sbjct: 125 ANDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAFLMNNLPLVKSLVQNLSANL- 183
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSGP---VDINGLKEVRE 199
+S KIR+ ++ T+ + LE+ G + + + G D + +K V++
Sbjct: 184 -HVPVSCKIRIFPRLEDTLAYAKMLEEAGASLVAVHGRTRDEKDGKKFRADWDAIKAVKD 242
Query: 200 ALSVPMVANGGVKHLND 216
AL +P++ANG ++HL+D
Sbjct: 243 ALRIPVLANGNIRHLDD 259
>04_04_0603 +
26539104-26539148,26539941-26540046,26540465-26540603,
26540837-26540945,26541030-26541166,26541610-26541746,
26542184-26542290,26542483-26542610,26543418-26543469
Length = 319
Score = 95.9 bits (228), Expect = 2e-20
Identities = 68/211 (32%), Positives = 106/211 (50%), Gaps = 19/211 (9%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSF--CQ---NSKARANEFMTTTTDFPV 77
V APMVR + FR L + AD+ + I+ F C+ N +F+ TD V
Sbjct: 8 VLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLERGTDTVV 67
Query: 78 -----------IAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSK 126
+ Q ++ + A++LV V +D+N GCP+ +++ G G +LLSK
Sbjct: 68 FRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGMGAALLSK 127
Query: 127 PEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHC-TKS 185
PE+I+DI+ LR L +++ KIRLLN + TV L +++EK GV L +
Sbjct: 128 PELIHDILTTLRRNLDT--TVTCKIRLLNTRQDTVELARRVEKIGVPALAVHGRKVKDRP 185
Query: 186 SGPVDINGLKEVREALSVPMVANGGVKHLND 216
P + + +V ALS+P++ANG V D
Sbjct: 186 RDPAKWDEIADVVSALSIPVIANGDVFEYED 216
>04_01_0100 +
1034057-1034308,1034962-1035078,1035152-1035382,
1038200-1038455,1038551-1038807,1038978-1039250,
1039617-1039898,1040045-1040165,1040351-1040520,
1040613-1040711
Length = 685
Score = 43.6 bits (98), Expect = 1e-04
Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 2/154 (1%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ + FR L + AD+ M + + Q + +++ Q
Sbjct: 337 APLTTVGNLPFRRLCKTLGADITCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 396
Query: 85 NRDDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
D +LV VD +D+N GCP + G G SLL+KP I IV+ V
Sbjct: 397 YPDTVARTVELVDNECSVDFIDINMGCPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTE 456
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT 176
++ V+ + + + G + +T
Sbjct: 457 KPLTVKVRTAFFEGRNRADSIVSDIYDWGASAIT 490
>04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562
Length = 285
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 48 FTPMILADSFCQNSKARANEFMTTTTDFPVIA----QFAANNRDD 88
F P ++AD+ QN KA A EF+ + PVI F +RDD
Sbjct: 242 FQPWLIADNI-QNVKASATEFVNSVRFLPVIGLVAYLFCLEDRDD 285
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 146 SISVKIRLLNDIKKTVI--LCQQLEKCGVTFLTSMEEHCTKSSGPVDINGLKEVREALSV 203
SI + IR + D K++ + LC+ +E C T++++ H + GP + K +R +
Sbjct: 443 SIIILIRDIPDAKESGLFHLCEFIEDCEFTYMSTQILHFLGNEGPKTSDPSKYIRYIYNR 502
Query: 204 PMVANGGVK 212
++ N V+
Sbjct: 503 VILENATVR 511
>05_04_0295 + 19940822-19940906,19940976-19941902,19941956-19942866
Length = 640
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 3 EICDIMEKFADAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPM---ILADSF 57
E+CD +FA A N + + V L+ NF FTP+ I ADSF
Sbjct: 52 EVCD---RFATAGFNANMITYLTQQLHLPLVEASNLLTNFTGTAAFTPVLGAIAADSF 106
>03_01_0059 +
484305-484617,484919-485406,485608-486092,486185-486461,
486495-486626,486721-486893,486982-487204
Length = 696
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 135 KGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKC 170
K NK S VKI + ++KT+I C ++E C
Sbjct: 534 KNPETAFSNKKSALVKIIEESPVRKTIIFCNKIETC 569
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 101 DGVDLNCGCPQKWAMKDGYGCSLLSKP 127
DG++++ GC +K MK YG S L+ P
Sbjct: 2697 DGLNISRGCVRKEQMKCSYGDSFLTLP 2723
>12_01_0576 +
4705912-4706220,4706319-4706393,4707398-4707477,
4707578-4707712,4708131-4708195,4708292-4708419,
4709108-4709364,4709457-4709982
Length = 524
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 170 CGVTFLTSMEEHCTKSSGP-VDINGLKEVREALSVPMVANGGVKHLN 215
CG F TS TK++ P + +GLK V A +P+VA GG+ N
Sbjct: 439 CGGVFPTS-----TKANNPTLGFDGLKTVCLASKLPVVAIGGINASN 480
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.136 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,071,873
Number of Sequences: 37544
Number of extensions: 230314
Number of successful extensions: 421
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 9
length of query: 222
length of database: 14,793,348
effective HSP length: 79
effective length of query: 143
effective length of database: 11,827,372
effective search space: 1691314196
effective search space used: 1691314196
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)
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