Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000375-TA|BGIBMGA000375-PA|IPR001269|Dihydrouridine
synthase, DuS
         (222 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   7e-11
SB_41483| Best HMM Match : Dus (HMM E-Value=1.9)                       40   0.002
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         31   0.76 
SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)                    28   5.4  
SB_1038| Best HMM Match : Helicase_C (HMM E-Value=1.1e-10)             28   5.4  

>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 81  FAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
           F AN+ + FV A+ LV    DGVDLN GCPQ  A +  YG  L  + E++  +VK     
Sbjct: 247 FCANDPEVFVQAALLVESECDGVDLNLGCPQHIAKRGHYGAFLQDEWELLEKMVKLAHEK 306

Query: 141 LPNKFSISVKIRLLNDIKKTVILCQQLEKCG 171
           L     I+ KIR+ +D++KT+   + LE  G
Sbjct: 307 L--SVPITCKIRVFDDVQKTIAYAKMLESAG 335


>SB_41483| Best HMM Match : Dus (HMM E-Value=1.9)
          Length = 169

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 157 IKKTVILCQQLEKCGVTFLT--SMEEHCTKSSGPVDINGLKEVREALSVPMVANGG 210
           I +TV LC+ +E  GVT L     E+H  +S  PV    ++ V  A+++P++ANGG
Sbjct: 15  IAETVQLCKLIESTGVTALAVHGREKH-ERSRQPVHTEYIQAVAAAVAIPVIANGG 69


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 157 IKKTVILCQQLEKCGVTFLTSMEEHCTKSSGPVDINGLK-EVREALSVPMVANGGVKHLN 215
           +K  ++ CQ L   G + L+S + +C +  GP+ ++GL+ +  EA       NG  KH  
Sbjct: 181 LKAAMVTCQMLGYKGAS-LSSCQGNCGRGQGPIWLSGLQCQGTEASLAECSHNGWGKHKC 239

Query: 216 D 216
           D
Sbjct: 240 D 240


>SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 125 SKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIK----KTVILCQQLEKCGVTFLT 176
           +K  I Y IVK L N +  K S    +  +N+ K    KT+I CQ +++C + + T
Sbjct: 133 NKKNITY-IVKYLSNSMDAKESFKWLVNEINERKDGGDKTIIYCQTIKQCSLVYGT 187


>SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)
          Length = 756

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 131 YDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVT 173
           Y+  K LR +L NK      I  L    + +   +QL++CGV+
Sbjct: 102 YEAYKSLRGILTNKAPGPDGIPALKKANRRLYAIRQLKRCGVS 144


>SB_1038| Best HMM Match : Helicase_C (HMM E-Value=1.1e-10)
          Length = 435

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 133 IVKGLRNVLPNKFSISVKIRLLNDIK----KTVILCQQLEKCGVTFLT 176
           IVK L N +  K S    +  +N+ K    KT+I CQ +++C + + T
Sbjct: 171 IVKYLSNSMDAKESFEWLVNKINERKDGGDKTIIYCQTIKQCSLVYGT 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,240,508
Number of Sequences: 59808
Number of extensions: 273560
Number of successful extensions: 454
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 6
length of query: 222
length of database: 16,821,457
effective HSP length: 79
effective length of query: 143
effective length of database: 12,096,625
effective search space: 1729817375
effective search space used: 1729817375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)