BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000375-TA|BGIBMGA000375-PA|IPR001269|Dihydrouridine synthase, DuS (222 letters) Database: fruitfly 52,641 sequences; 24,830,863 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY069347-1|AAL39492.1| 396|Drosophila melanogaster LD05576p pro... 214 9e-56 AE014134-3030|AAF53752.1| 396|Drosophila melanogaster CG10495-P... 214 9e-56 AY051946-1|AAK93370.1| 505|Drosophila melanogaster LD42056p pro... 123 2e-28 AE014134-67|AAN10512.1| 505|Drosophila melanogaster CG3645-PB, ... 123 2e-28 AE014134-66|AAF51525.2| 505|Drosophila melanogaster CG3645-PA, ... 123 2e-28 AY069835-1|AAL39980.1| 460|Drosophila melanogaster SD08006p pro... 73 2e-13 AE014298-2018|AAF48360.2| 473|Drosophila melanogaster CG1434-PA... 73 2e-13 AY119278-1|AAM51138.1| 604|Drosophila melanogaster SD26982p pro... 44 1e-04 AE014134-3157|AAF53841.1| 604|Drosophila melanogaster CG10463-P... 44 1e-04 >AY069347-1|AAL39492.1| 396|Drosophila melanogaster LD05576p protein. Length = 396 Score = 214 bits (522), Expect = 9e-56 Identities = 103/217 (47%), Positives = 146/217 (67%), Gaps = 7/217 (3%) Query: 6 DIMEKFADAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARA 65 DI FA+A+ + +++V APMVRYSK+ FR LVR L FTPM+++DS + KAR Sbjct: 11 DIAAMFAEAQSD--FVRVSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQ 68 Query: 66 NEFMTTTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLS 125 NEF T D P+IAQFAA + +FV +++L+YPYVDG+DLNCGCPQ WAM GYGC +L Sbjct: 69 NEFSTGADDQPLIAQFAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGMLR 128 Query: 126 KPEIIYDIVKGLRNVLPNKFSISVKIRLL---NDIKKTVILCQQLEKCGVTFLT--SMEE 180 +PE+++ +V+ +R LP FS+SVK+RLL +++T+ L +QLE GVTFLT Sbjct: 129 QPELVHQVVQEVRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTP 188 Query: 181 HCTKSSGPVDINGLKEVREALSVPMVANGGVKHLNDA 217 S +DI + +VR++L +P++ NG V+ DA Sbjct: 189 AQKHSKDTLDIPAMSQVRQSLQIPLIVNGNVESYRDA 225 >AE014134-3030|AAF53752.1| 396|Drosophila melanogaster CG10495-PA protein. Length = 396 Score = 214 bits (522), Expect = 9e-56 Identities = 103/217 (47%), Positives = 146/217 (67%), Gaps = 7/217 (3%) Query: 6 DIMEKFADAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARA 65 DI FA+A+ + +++V APMVRYSK+ FR LVR L FTPM+++DS + KAR Sbjct: 11 DIAAMFAEAQSD--FVRVSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQ 68 Query: 66 NEFMTTTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLS 125 NEF T D P+IAQFAA + +FV +++L+YPYVDG+DLNCGCPQ WAM GYGC +L Sbjct: 69 NEFSTGADDQPLIAQFAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGMLR 128 Query: 126 KPEIIYDIVKGLRNVLPNKFSISVKIRLL---NDIKKTVILCQQLEKCGVTFLT--SMEE 180 +PE+++ +V+ +R LP FS+SVK+RLL +++T+ L +QLE GVTFLT Sbjct: 129 QPELVHQVVQEVRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTP 188 Query: 181 HCTKSSGPVDINGLKEVREALSVPMVANGGVKHLNDA 217 S +DI + +VR++L +P++ NG V+ DA Sbjct: 189 AQKHSKDTLDIPAMSQVRQSLQIPLIVNGNVESYRDA 225 >AY051946-1|AAK93370.1| 505|Drosophila melanogaster LD42056p protein. Length = 505 Score = 123 bits (297), Expect = 2e-28 Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 5/197 (2%) Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82 V APMV S++ +R L R + A+LC++PM A+ F + K R + T D P+I QF Sbjct: 31 VVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLIIQFC 90 Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142 N+ +DA+ L + D VD+N GCPQ A + YG L + E++ +IV L L Sbjct: 91 GNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTLHAKL- 149 Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDINGLKEVRE 199 ++ KIR+ D++KT+ + LE G LT E +G + N +K VR+ Sbjct: 150 -AVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNYIKNVRQ 208 Query: 200 ALSVPMVANGGVKHLND 216 + +PM+ANG + L+D Sbjct: 209 HIKIPMLANGNILALDD 225 >AE014134-67|AAN10512.1| 505|Drosophila melanogaster CG3645-PB, isoform B protein. Length = 505 Score = 123 bits (297), Expect = 2e-28 Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 5/197 (2%) Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82 V APMV S++ +R L R + A+LC++PM A+ F + K R + T D P+I QF Sbjct: 31 VVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLIIQFC 90 Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142 N+ +DA+ L + D VD+N GCPQ A + YG L + E++ +IV L L Sbjct: 91 GNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTLHAKL- 149 Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDINGLKEVRE 199 ++ KIR+ D++KT+ + LE G LT E +G + N +K VR+ Sbjct: 150 -AVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNYIKNVRQ 208 Query: 200 ALSVPMVANGGVKHLND 216 + +PM+ANG + L+D Sbjct: 209 HIKIPMLANGNILALDD 225 >AE014134-66|AAF51525.2| 505|Drosophila melanogaster CG3645-PA, isoform A protein. Length = 505 Score = 123 bits (297), Expect = 2e-28 Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 5/197 (2%) Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82 V APMV S++ +R L R + A+LC++PM A+ F + K R + T D P+I QF Sbjct: 31 VVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLIIQFC 90 Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142 N+ +DA+ L + D VD+N GCPQ A + YG L + E++ +IV L L Sbjct: 91 GNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTLHAKL- 149 Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDINGLKEVRE 199 ++ KIR+ D++KT+ + LE G LT E +G + N +K VR+ Sbjct: 150 -AVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNYIKNVRQ 208 Query: 200 ALSVPMVANGGVKHLND 216 + +PM+ANG + L+D Sbjct: 209 HIKIPMLANGNILALDD 225 >AY069835-1|AAL39980.1| 460|Drosophila melanogaster SD08006p protein. Length = 460 Score = 73.3 bits (172), Expect = 2e-13 Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 21/211 (9%) Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTT-----TDFPV 77 + APMVR + R L AD+ +T L D S R N + T +D + Sbjct: 14 ILAPMVRVGTLPMRLLALEMGADIVYTEE-LVDIKLIKSIRRPNPALGTVDFVDPSDGTI 72 Query: 78 IAQFAANNRDDFV------DAS------KLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLS 125 + + A V DA KL+ + G+D+N GCP+++++K G G +LL+ Sbjct: 73 VFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGMGAALLA 132 Query: 126 KPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFL-TSMEEHCTK 184 P+ I++ L + L ++ KIR+L D++ T+ L Q+L G+ + + Sbjct: 133 DPDKAAHILRTLCSGL--DIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIHARTRDER 190 Query: 185 SSGPVDINGLKEVREALSVPMVANGGVKHLN 215 P L+ V +A+ +P++ANGG K+++ Sbjct: 191 PQHPAHPEVLRAVAQAVDIPIIANGGSKNMH 221 >AE014298-2018|AAF48360.2| 473|Drosophila melanogaster CG1434-PA protein. Length = 473 Score = 73.3 bits (172), Expect = 2e-13 Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 21/211 (9%) Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTT-----TDFPV 77 + APMVR + R L AD+ +T L D S R N + T +D + Sbjct: 27 ILAPMVRVGTLPMRLLALEMGADIVYTEE-LVDIKLIKSIRRPNPALGTVDFVDPSDGTI 85 Query: 78 IAQFAANNRDDFV------DAS------KLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLS 125 + + A V DA KL+ + G+D+N GCP+++++K G G +LL+ Sbjct: 86 VFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGMGAALLA 145 Query: 126 KPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFL-TSMEEHCTK 184 P+ I++ L + L ++ KIR+L D++ T+ L Q+L G+ + + Sbjct: 146 DPDKAAHILRTLCSGL--DIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIHARTRDER 203 Query: 185 SSGPVDINGLKEVREALSVPMVANGGVKHLN 215 P L+ V +A+ +P++ANGG K+++ Sbjct: 204 PQHPAHPEVLRAVAQAVDIPIIANGGSKNMH 234 >AY119278-1|AAM51138.1| 604|Drosophila melanogaster SD26982p protein. Length = 604 Score = 44.4 bits (100), Expect = 1e-04 Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 11/202 (5%) Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82 V +P+ + FR + + F AD+ M A + ++ Q Sbjct: 260 VLSPLTTLGNLPFRRICKEFGADITCGEMACAQPLLKGMGQEWALTKRHQSEDVFGVQLC 319 Query: 83 ANNRDDFVDASKLVYP--YVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140 NN + A+++++ VD +DLN GCP + G G +L+ + I+ V+ Sbjct: 320 GNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTNILELTVRSCA-A 378 Query: 141 LPNKFSISVKIRLLNDIKKTVI--LCQQLEKCGVTFLT----SMEEHCTKSSGPVDINGL 194 L ++ +VK+R K+V L +E+ G + +T S E+ TK + I Sbjct: 379 LSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASAVTLHGRSREQRYTKHANWAYIE-- 436 Query: 195 KEVREALSVPMVANGGVKHLND 216 + +A +P++ NG + D Sbjct: 437 ECAAKAKRMPVIGNGDILSYED 458 >AE014134-3157|AAF53841.1| 604|Drosophila melanogaster CG10463-PA protein. Length = 604 Score = 44.4 bits (100), Expect = 1e-04 Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 11/202 (5%) Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82 V +P+ + FR + + F AD+ M A + ++ Q Sbjct: 260 VLSPLTTLGNLPFRRICKEFGADITCGEMACAQPLLKGMGQEWALTKRHQSEDVFGVQLC 319 Query: 83 ANNRDDFVDASKLVYP--YVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140 NN + A+++++ VD +DLN GCP + G G +L+ + I+ V+ Sbjct: 320 GNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTNILELTVRSCA-A 378 Query: 141 LPNKFSISVKIRLLNDIKKTVI--LCQQLEKCGVTFLT----SMEEHCTKSSGPVDINGL 194 L ++ +VK+R K+V L +E+ G + +T S E+ TK + I Sbjct: 379 LSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASAVTLHGRSREQRYTKHANWAYIE-- 436 Query: 195 KEVREALSVPMVANGGVKHLND 216 + +A +P++ NG + D Sbjct: 437 ECAAKAKCMPVIGNGDILSYED 458 Database: fruitfly Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 24,830,863 Number of sequences in database: 52,641 Lambda K H 0.323 0.136 0.412 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,555,653 Number of Sequences: 52641 Number of extensions: 411637 Number of successful extensions: 622 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 599 Number of HSP's gapped (non-prelim): 11 length of query: 222 length of database: 24,830,863 effective HSP length: 82 effective length of query: 140 effective length of database: 20,514,301 effective search space: 2872002140 effective search space used: 2872002140 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (22.0 bits) S2: 60 (28.3 bits)
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