Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000375-TA|BGIBMGA000375-PA|IPR001269|Dihydrouridine
synthase, DuS
(222 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21323-13|AAA62547.2| 284|Caenorhabditis elegans Hypothetical p... 174 4e-44
Z81077-3|CAB03067.1| 527|Caenorhabditis elegans Hypothetical pr... 122 3e-28
AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical ... 83 2e-16
AF125451-6|AAD12825.1| 554|Caenorhabditis elegans Hypothetical ... 58 4e-09
AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical... 29 2.0
U53341-7|AAC69111.3| 744|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL132848-4|CAB60387.1| 331|Caenorhabditis elegans Hypothetical ... 29 3.5
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden... 28 6.1
>U21323-13|AAA62547.2| 284|Caenorhabditis elegans Hypothetical
protein C45G9.2 protein.
Length = 284
Score = 174 bits (424), Expect = 4e-44
Identities = 85/192 (44%), Positives = 130/192 (67%), Gaps = 1/192 (0%)
Query: 27 MVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAANNR 86
MVRYSK+ FR LVR ++ D+CFTPMI A +F ++ K R++E D P+I QFA ++
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDP 60
Query: 87 DDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN-KF 145
+A+++VY GVDLNCGCP+ G+G +LLSKPE++ D+V+ R +P+ F
Sbjct: 61 FVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120
Query: 146 SISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSGPVDINGLKEVREALSVPM 205
S+S+KIR+ +DI+KTV LC++ E GVT LT ++ + P+DI L+ V++++SVP+
Sbjct: 121 SVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEPIDIQALRIVKDSVSVPI 180
Query: 206 VANGGVKHLNDA 217
+ANGG+ +A
Sbjct: 181 IANGGITTREEA 192
>Z81077-3|CAB03067.1| 527|Caenorhabditis elegans Hypothetical
protein F36A2.2 protein.
Length = 527
Score = 122 bits (293), Expect = 3e-28
Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 7/211 (3%)
Query: 17 NKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFP 76
N+ KV APMV S++ FR R + A L FTPMI A F + R N D P
Sbjct: 70 NQRITKVLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRP 129
Query: 77 VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
++ QF AN D F+ A +LV DGVDLN GCPQ A + YG L + ++I ++V
Sbjct: 130 LVVQFCANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSA 189
Query: 137 LRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDING 193
+R+ + IS KIR+ +D ++TV ++L G T LT + +G D +
Sbjct: 190 VRDYC--RLPISCKIRVRDDRQQTVEYAKRLVDAGATMLTVHGRTRDMKGAETGLADWSR 247
Query: 194 LKEVREALS--VPMVANGGVKHLNDATTYMK 222
+++V EA+ VP++ANG ++ D M+
Sbjct: 248 IRDVVEAVGSRVPVMANGNIQFPGDVERCMQ 278
>AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical
protein Y54E5A.6 protein.
Length = 436
Score = 82.6 bits (195), Expect = 2e-16
Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 20/205 (9%)
Query: 22 KVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTT-----DFP 76
K+ APMVR + R L + ADLC+T I+ + ++ NE + T D
Sbjct: 9 KILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRV-VNEALGTIDYRNGDDII 67
Query: 77 V----------IAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSK 126
+ I Q N+ + +++V V G+D+N GCP+ +++ G G +LL++
Sbjct: 68 LRLAPEEKGRCILQIGTNSGEKAAKIAQIVGDDVAGIDVNMGCPKPFSIHCGMGAALLTQ 127
Query: 127 PEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFL-TSMEEHCTKS 185
E I DI+ L++ K ++ KIR+L+D + T+ L Q++EKC V+ L +
Sbjct: 128 TEKIVDILTSLKSAA--KVPVTCKIRVLDDPEDTLKLVQEIEKCRVSALGVHGRRRDERQ 185
Query: 186 SGPVDINGLKEVREAL-SVPMVANG 209
I+ +++V +A+ S+P+++NG
Sbjct: 186 PDKCRIDEIRDVAQAVQSIPVISNG 210
>AF125451-6|AAD12825.1| 554|Caenorhabditis elegans Hypothetical
protein Y37E11B.5 protein.
Length = 554
Score = 58.4 bits (135), Expect = 4e-09
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 22 KVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQF 81
K AP+ + FR + ++ AD+ M LA S + + + + Q
Sbjct: 206 KYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGTASEYSLLKRHPCEKIFGVQL 265
Query: 82 AANNRDDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
A D AS++V VD +D+N GCP + G GC+L S+P+ +++++ ++
Sbjct: 266 AGGFADTMAKASQIVVENFDVDFIDINMGCPIDVVNQKGGGCALPSRPQKLFEVLAATKS 325
Query: 140 VLPNKFSISVKIR 152
VL ++VKIR
Sbjct: 326 VLGGCCPLTVKIR 338
>AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical
protein Y54E10A.16a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 1 MKEICDIMEKFADAKINKTYLKV---CAPMVRYSKVHFRTLVRNFNADLCFTPMI 52
+K ICD+ F + + NK Y+K P V + R AD CF ++
Sbjct: 364 VKSICDVWPDFNERERNKQYIKTEMNQVPNVNQEPYAYEYFFRRCFADKCFNHLL 418
>U53341-7|AAC69111.3| 744|Caenorhabditis elegans Hypothetical
protein F49E10.1 protein.
Length = 744
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 141 LPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTK--SSGPVDINGLKEVR 198
+P K + VK+ LL+D + +V L Q+E+CG + T G + + +
Sbjct: 127 MPAKPADEVKVSLLSDEESSVSLDIQIEECGTAVPVKQVKRPTTLVPYGQQEDHSFNDAL 186
Query: 199 EALSVPMVANGGVKHLND 216
S+ ++ + +KH N+
Sbjct: 187 GVPSINVIPHTPIKHENN 204
>AL132848-4|CAB60387.1| 331|Caenorhabditis elegans Hypothetical
protein Y47H10A.5 protein.
Length = 331
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 168 EKCGVTFLTSMEEHCTKSSGPVDINGLKEVREALSVPMVANGGVKH 213
E F + E HCTK+ P++ N + VR+A+ + + G H
Sbjct: 118 ESVNQNFGAAFEHHCTKTDDPINEN--EPVRKAVMIAEIPRGKGVH 161
>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 1, isoform a
protein.
Length = 1281
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 89 FVDASKLVYPYVDGVDLNCGCPQK 112
F+ A + PY+DG+ NC P K
Sbjct: 1136 FLGADNMEEPYLDGIQYNCVAPGK 1159
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.136 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,554,846
Number of Sequences: 27539
Number of extensions: 224761
Number of successful extensions: 504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 9
length of query: 222
length of database: 12,573,161
effective HSP length: 79
effective length of query: 143
effective length of database: 10,397,580
effective search space: 1486853940
effective search space used: 1486853940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)
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