Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000375-TA|BGIBMGA000375-PA|IPR001269|Dihydrouridine
synthase, DuS
(222 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D5693C Cluster: PREDICTED: similar to dihydrouri... 258 1e-67
UniRef50_Q0IFC6 Cluster: tRNA-dihydrouridine synthase; n=2; Culi... 249 5e-65
UniRef50_UPI00015B403F Cluster: PREDICTED: similar to MGC79829 p... 245 8e-64
UniRef50_O95620 Cluster: tRNA-dihydrouridine synthase 4-like; n=... 216 4e-55
UniRef50_Q9VJ06 Cluster: CG10495-PA; n=2; Sophophora|Rep: CG1049... 214 2e-54
UniRef50_Q54ES7 Cluster: Putative uncharacterized protein; n=1; ... 177 2e-43
UniRef50_Q09504 Cluster: Uncharacterized tRNA-dihydrouridine syn... 174 1e-42
UniRef50_O74553 Cluster: tRNA dihydrouridine synthase Dus4; n=1;... 170 3e-41
UniRef50_A7EMF2 Cluster: Putative uncharacterized protein; n=1; ... 154 2e-36
UniRef50_Q5A4Y0 Cluster: Potential tRNA dihydrouridine synthase;... 153 3e-36
UniRef50_Q06063 Cluster: tRNA-dihydrouridine synthase 4; n=10; S... 146 4e-34
UniRef50_Q583Y8 Cluster: TRNA-dihydrouridine synthase 4, putativ... 145 9e-34
UniRef50_Q4Q391 Cluster: Putative uncharacterized protein; n=3; ... 134 1e-30
UniRef50_A5K1E0 Cluster: tRNA-dihydrouridine synthase, putative;... 128 8e-29
UniRef50_Q54XQ6 Cluster: Putative uncharacterized protein; n=1; ... 127 2e-28
UniRef50_Q9FH91 Cluster: Gb|AAF51525.1; n=6; Magnoliophyta|Rep: ... 123 3e-27
UniRef50_Q9VPM1 Cluster: CG3645-PA, isoform A; n=2; Diptera|Rep:... 123 3e-27
UniRef50_A7AQM0 Cluster: Dihydrouridine synthase, putative; n=1;... 122 5e-27
UniRef50_Q9XVN8 Cluster: Putative uncharacterized protein; n=2; ... 122 9e-27
UniRef50_Q5KPM6 Cluster: Putative uncharacterized protein; n=2; ... 121 1e-26
UniRef50_A4S141 Cluster: Predicted protein; n=1; Ostreococcus lu... 121 2e-26
UniRef50_Q5CSA9 Cluster: Dus1p, tRNA dihydrouridine synthase; n=... 117 2e-25
UniRef50_Q6P1R4 Cluster: tRNA-dihydrouridine synthase 1-like; n=... 115 8e-25
UniRef50_A0EG06 Cluster: Chromosome undetermined scaffold_94, wh... 112 8e-24
UniRef50_A2FU21 Cluster: Putative uncharacterized protein; n=1; ... 110 2e-23
UniRef50_UPI000023CFE7 Cluster: hypothetical protein FG01258.1; ... 105 9e-22
UniRef50_Q4UGK9 Cluster: Putative uncharacterized protein; n=2; ... 104 2e-21
UniRef50_P53759 Cluster: tRNA-dihydrouridine synthase 1; n=11; S... 103 4e-21
UniRef50_UPI0000499E32 Cluster: conserved hypothetical protein; ... 101 1e-20
UniRef50_Q9HGN6 Cluster: tRNA dihydrouridine synthase Dus1; n=1;... 100 3e-20
UniRef50_A2EF32 Cluster: Dihydrouridine synthase, putative; n=1;... 99 8e-20
UniRef50_Q8SUV4 Cluster: Putative uncharacterized protein ECU07_... 99 8e-20
UniRef50_Q8PX79 Cluster: NifR3-like protein; n=5; Archaea|Rep: N... 98 1e-19
UniRef50_A2DHB4 Cluster: Putative uncharacterized protein; n=1; ... 97 2e-19
UniRef50_Q00RI1 Cluster: OSIGBa0125M19.5 protein; n=9; Magnoliop... 96 7e-19
UniRef50_A6DCX2 Cluster: tRNA-dihydrouridine synthase B; n=1; Ca... 95 9e-19
UniRef50_A4RU69 Cluster: Predicted protein; n=2; Ostreococcus|Re... 95 9e-19
UniRef50_Q4PBU9 Cluster: Putative uncharacterized protein; n=1; ... 95 1e-18
UniRef50_Q57V78 Cluster: TRNA-dihydrouridine synthase 1, putativ... 91 2e-17
UniRef50_UPI000023EA9A Cluster: hypothetical protein FG07217.1; ... 90 5e-17
UniRef50_A6RW05 Cluster: Putative uncharacterized protein; n=1; ... 89 8e-17
UniRef50_Q6F288 Cluster: TRNA dihydrouridine synthetase; n=3; Mo... 89 1e-16
UniRef50_A2EN54 Cluster: Putative uncharacterized protein; n=1; ... 89 1e-16
UniRef50_Q4PG83 Cluster: Putative uncharacterized protein; n=1; ... 88 2e-16
UniRef50_A2F0D1 Cluster: Putative uncharacterized protein; n=1; ... 85 1e-15
UniRef50_A4M5I1 Cluster: Dihydrouridine synthase, DuS; n=1; Petr... 84 2e-15
UniRef50_Q5KP54 Cluster: TRNA dihydrouridine synthase, putative;... 84 2e-15
UniRef50_Q9XWJ9 Cluster: Putative uncharacterized protein; n=2; ... 83 7e-15
UniRef50_A2ACC0 Cluster: Novel protein; n=17; Eumetazoa|Rep: Nov... 82 9e-15
UniRef50_Q4D174 Cluster: Dihydrouridine synthase (Dus), putative... 82 1e-14
UniRef50_Q7SGX4 Cluster: Putative uncharacterized protein NCU031... 81 2e-14
UniRef50_Q6AJZ5 Cluster: TRNA-dihydrouridine synthase; n=1; Desu... 80 4e-14
UniRef50_Q4WRF0 Cluster: Dihydrouridine synthase family protein,... 79 7e-14
UniRef50_Q9NX74 Cluster: tRNA-dihydrouridine synthase 2-like; n=... 79 9e-14
UniRef50_A2FJB5 Cluster: TIM-barrel protein, nifR3 family protei... 79 1e-13
UniRef50_Q54QJ2 Cluster: Putative uncharacterized protein; n=1; ... 78 2e-13
UniRef50_Q5KGP0 Cluster: Putative uncharacterized protein; n=3; ... 78 2e-13
UniRef50_UPI00015B40A4 Cluster: PREDICTED: similar to tRNA-dihyd... 77 3e-13
UniRef50_Q7RX85 Cluster: Putative uncharacterized protein NCU000... 77 3e-13
UniRef50_Q59YG4 Cluster: Potential tRNA dihydrouridine synthase;... 76 6e-13
UniRef50_Q1NXZ7 Cluster: Dihydrouridine synthase TIM-barrel prot... 75 1e-12
UniRef50_Q8RFK3 Cluster: Nitrogen regulation protein NIFR3; n=3;... 75 2e-12
UniRef50_Q2H6D9 Cluster: Putative uncharacterized protein; n=1; ... 75 2e-12
UniRef50_Q8KB61 Cluster: TIM-barrel protein, nifR3 family; n=10;... 74 3e-12
UniRef50_Q9VY45 Cluster: CG1434-PA; n=6; Endopterygota|Rep: CG14... 73 4e-12
UniRef50_Q4S086 Cluster: Chromosome undetermined SCAF14784, whol... 73 6e-12
UniRef50_Q6C002 Cluster: Yarrowia lipolytica chromosome F of str... 73 7e-12
UniRef50_O74731 Cluster: tRNA dihydrouridine synthase Dus2; n=1;... 73 7e-12
UniRef50_A4RL93 Cluster: Putative uncharacterized protein; n=1; ... 73 7e-12
UniRef50_A6DPY9 Cluster: Putative uncharacterized protein; n=1; ... 72 1e-11
UniRef50_Q74EF7 Cluster: Dihydrouridine synthase family protein;... 72 1e-11
UniRef50_Q31II6 Cluster: Dihydrouridine synthase; n=1; Thiomicro... 71 2e-11
UniRef50_A4XH30 Cluster: Putative TIM-barrel protein, nifR3 fami... 71 2e-11
UniRef50_A5DYF6 Cluster: Putative uncharacterized protein; n=1; ... 71 2e-11
UniRef50_A1SX05 Cluster: Dihydrouridine synthase, DuS; n=3; Alte... 71 2e-11
UniRef50_Q550J6 Cluster: Putative uncharacterized protein; n=2; ... 71 2e-11
UniRef50_Q4PIC3 Cluster: Putative uncharacterized protein; n=1; ... 71 2e-11
UniRef50_Q7MXX6 Cluster: TIM-barrel protein, putative, NifR3 fam... 71 3e-11
UniRef50_Q6BX60 Cluster: Debaryomyces hansenii chromosome B of s... 71 3e-11
UniRef50_O67533 Cluster: Probable tRNA-dihydrouridine synthase; ... 71 3e-11
UniRef50_Q899H0 Cluster: Nitrogen regulation protein nifR3; n=24... 70 4e-11
UniRef50_Q47C15 Cluster: Dihydrouridine synthase, DuS; n=2; Beta... 70 4e-11
UniRef50_Q1IVR5 Cluster: Dihydrouridine synthase TIM-barrel prot... 70 5e-11
UniRef50_A6BZR9 Cluster: Predicted TIM-barrel enzyme, possibly d... 70 5e-11
UniRef50_A6CBK4 Cluster: Predicted TIM-barrel enzyme, possibly d... 69 7e-11
UniRef50_Q6SFW7 Cluster: NifR3/Smm1 family protein; n=1; uncultu... 69 9e-11
UniRef50_Q0YFW9 Cluster: Dihydrouridine synthase TIM-barrel prot... 69 9e-11
UniRef50_A2DYY3 Cluster: Putative uncharacterized protein; n=1; ... 69 1e-10
UniRef50_Q5ZRM0 Cluster: Nitrogen regulation protein; n=4; Legio... 68 2e-10
UniRef50_Q0FAI7 Cluster: tRNA-dihydrouridine synthase, putative;... 68 2e-10
UniRef50_Q14SX5 Cluster: Putative dihydrouridine synthase; n=1; ... 67 3e-10
UniRef50_Q5M689 Cluster: Possible transcriptional regulator; n=2... 66 5e-10
UniRef50_A0LJ96 Cluster: Putative TIM-barrel protein, nifR3 fami... 66 5e-10
UniRef50_Q64MI4 Cluster: Putative TIM-barrel enzyme; n=3; Bacter... 66 7e-10
UniRef50_Q6MNE4 Cluster: Dihydrouridine synthase family protein;... 66 9e-10
UniRef50_Q0B0N8 Cluster: Putative TIM-barrel protein, NifR3 fami... 66 9e-10
UniRef50_Q9JUP6 Cluster: tRNA-dihydrouridine synthase C; n=4; Ne... 66 9e-10
UniRef50_Q8ZAX7 Cluster: tRNA-dihydrouridine synthase B; n=214; ... 66 9e-10
UniRef50_P37567 Cluster: Probable tRNA-dihydrouridine synthase 1... 66 9e-10
UniRef50_A6LGT0 Cluster: Putative TIM-barrel enzyme; n=1; Paraba... 65 1e-09
UniRef50_Q7R3H4 Cluster: GLP_158_49916_51304; n=1; Giardia lambl... 65 1e-09
UniRef50_A2QES0 Cluster: Contig An02c0390, complete genome; n=12... 65 1e-09
UniRef50_Q6MNE9 Cluster: Nitrogen regulation protein nifR3; n=1;... 65 2e-09
UniRef50_Q6AKJ6 Cluster: Putative uncharacterized protein; n=1; ... 65 2e-09
UniRef50_Q1Q3Q8 Cluster: Strongly similar to tRNA-dihydrouridine... 64 3e-09
UniRef50_Q1DPY5 Cluster: Putative uncharacterized protein; n=1; ... 64 3e-09
UniRef50_Q7VKU5 Cluster: tRNA-dihydrouridine synthase C; n=118; ... 64 3e-09
UniRef50_Q607L4 Cluster: TIM-barrel protein, yjbN family; n=10; ... 64 3e-09
UniRef50_Q0G7A4 Cluster: Nitrogen regulation protein nifr3; n=2;... 64 3e-09
UniRef50_Q127F8 Cluster: Dihydrouridine synthase, DuS; n=3; Prot... 63 6e-09
UniRef50_Q7R1J1 Cluster: GLP_38_15456_16676; n=1; Giardia lambli... 63 6e-09
UniRef50_Q9CLW3 Cluster: tRNA-dihydrouridine synthase B; n=17; P... 63 6e-09
UniRef50_P53720 Cluster: tRNA-dihydrouridine synthase 2; n=7; Sa... 63 6e-09
UniRef50_Q8XYX1 Cluster: tRNA-dihydrouridine synthase C; n=26; P... 62 8e-09
UniRef50_O52532 Cluster: tRNA-dihydrouridine synthase B; n=6; Ga... 62 8e-09
UniRef50_A3RPJ2 Cluster: TRNA-dihydrouridine synthase; n=2; Prot... 62 1e-08
UniRef50_Q4PAE4 Cluster: Putative uncharacterized protein; n=1; ... 62 1e-08
UniRef50_A7EHJ6 Cluster: Putative uncharacterized protein; n=2; ... 62 1e-08
UniRef50_A6R3V4 Cluster: Putative uncharacterized protein; n=1; ... 62 1e-08
UniRef50_Q08111 Cluster: Probable tRNA-dihydrouridine synthase; ... 62 1e-08
UniRef50_Q3AZ67 Cluster: Dihydrouridine synthase TIM-barrel prot... 61 2e-08
UniRef50_Q2RM54 Cluster: Dihydrouridine synthase TIM-barrel prot... 61 2e-08
UniRef50_Q22A31 Cluster: TIM-barrel protein, yjbN family; n=1; T... 61 2e-08
UniRef50_O25427 Cluster: Probable tRNA-dihydrouridine synthase; ... 61 2e-08
UniRef50_Q8YAB9 Cluster: Lmo0227 protein; n=55; Bacteria|Rep: Lm... 61 2e-08
UniRef50_Q7XWZ9 Cluster: OSJNBa0079F16.4 protein; n=8; Oryza sat... 61 2e-08
UniRef50_Q6PEH0 Cluster: Zgc:63779; n=8; Chordata|Rep: Zgc:63779... 60 3e-08
UniRef50_A4SY29 Cluster: Dihydrouridine synthase, DuS; n=1; Poly... 59 7e-08
UniRef50_A6U9Y2 Cluster: Dihydrouridine synthase DuS; n=2; Sinor... 59 1e-07
UniRef50_A4S604 Cluster: Predicted protein; n=1; Ostreococcus lu... 59 1e-07
UniRef50_Q54CU9 Cluster: Putative uncharacterized protein; n=1; ... 59 1e-07
UniRef50_A7CWF1 Cluster: Putative TIM-barrel protein, nifR3 fami... 58 1e-07
UniRef50_Q9TYN2 Cluster: Putative uncharacterized protein Y37E11... 58 1e-07
UniRef50_Q9ZED2 Cluster: Probable tRNA-dihydrouridine synthase; ... 58 1e-07
UniRef50_Q9RRP8 Cluster: NifR3 protein; n=2; Deinococcus|Rep: Ni... 58 2e-07
UniRef50_Q3IKP0 Cluster: TRNA-dihydrouridine synthase C; n=5; Al... 58 2e-07
UniRef50_A1VHK2 Cluster: Dihydrouridine synthase, DuS; n=4; Desu... 58 2e-07
UniRef50_Q5SMC7 Cluster: TRNA-dihydrouridine synthase; n=2; Ther... 58 2e-07
UniRef50_Q5LQV9 Cluster: TRNA-dihydrouridine synthase A; n=46; B... 58 2e-07
UniRef50_Q4FQ57 Cluster: Possible tRNA-dihydrouridine synthase; ... 58 2e-07
UniRef50_Q1QZQ6 Cluster: Dihydrouridine synthase, DuS; n=1; Chro... 58 2e-07
UniRef50_A6W1E8 Cluster: Dihydrouridine synthase DuS; n=1; Marin... 58 2e-07
UniRef50_Q96G46 Cluster: tRNA-dihydrouridine synthase 3-like; n=... 58 2e-07
UniRef50_Q8GQD1 Cluster: NifR; n=5; Leptospira|Rep: NifR - Lepto... 57 3e-07
UniRef50_A3JG66 Cluster: Putative uncharacterized protein; n=3; ... 57 3e-07
UniRef50_A5D5Q0 Cluster: TRNA-dihydrouridine synthase; n=5; Firm... 57 4e-07
UniRef50_Q9LY64 Cluster: Putative uncharacterized protein MAA21_... 57 4e-07
UniRef50_Q9Z7D8 Cluster: Predicted oxidoreductase; n=7; Chlamydi... 56 7e-07
UniRef50_Q5LRN6 Cluster: TRNA-dihydrouridine synthase, putative;... 56 7e-07
UniRef50_Q4QEF9 Cluster: Putative uncharacterized protein; n=3; ... 56 7e-07
UniRef50_A4EC62 Cluster: Putative uncharacterized protein; n=1; ... 56 9e-07
UniRef50_Q251N6 Cluster: Putative uncharacterized protein; n=2; ... 55 1e-06
UniRef50_Q55724 Cluster: Probable tRNA-dihydrouridine synthase 1... 55 1e-06
UniRef50_Q1VN28 Cluster: Dihydrouridine synthase TIM-barrel prot... 55 2e-06
UniRef50_Q7R9R0 Cluster: Uncharacterized protein family UPF0034,... 55 2e-06
UniRef50_Q7R684 Cluster: GLP_574_116690_118078; n=1; Giardia lam... 54 2e-06
UniRef50_Q21L63 Cluster: Dihydrouridine synthase, DuS; n=1; Sacc... 54 3e-06
UniRef50_A7DPL5 Cluster: Putative TIM-barrel protein, nifR3 fami... 54 3e-06
UniRef50_UPI00015B6197 Cluster: PREDICTED: similar to CG10463-PA... 54 4e-06
UniRef50_Q0VPD7 Cluster: TIM-barrel protein, yjbN family; n=4; B... 54 4e-06
UniRef50_Q91XI1 Cluster: tRNA-dihydrouridine synthase 3-like; n=... 54 4e-06
UniRef50_A4RQU5 Cluster: Predicted protein; n=2; Ostreococcus|Re... 53 5e-06
UniRef50_Q8YMN5 Cluster: Transcriptional regulator; n=5; Bacteri... 53 6e-06
UniRef50_Q6MAU6 Cluster: Putative uncharacterized protein yohI; ... 53 6e-06
UniRef50_Q4FLD8 Cluster: Putative uncharacterized protein; n=2; ... 53 6e-06
UniRef50_Q30WR3 Cluster: Dihydrouridine synthase family protein;... 53 6e-06
UniRef50_A6NW05 Cluster: Putative uncharacterized protein; n=1; ... 53 6e-06
UniRef50_A6GHV6 Cluster: Dihydrouridine synthase family protein;... 53 6e-06
UniRef50_Q5CRK5 Cluster: Ylr401cp-like protein with 2 CCCH domai... 53 6e-06
UniRef50_A7S213 Cluster: Predicted protein; n=1; Nematostella ve... 53 6e-06
UniRef50_O83945 Cluster: Probable tRNA-dihydrouridine synthase; ... 53 6e-06
UniRef50_Q6MRF1 Cluster: Transcription regulator homolog yacF; n... 52 9e-06
UniRef50_Q3E0H8 Cluster: Dihydrouridine synthase TIM-barrel prot... 52 9e-06
UniRef50_Q884C6 Cluster: tRNA-dihydrouridine synthase C; n=8; Pr... 52 9e-06
UniRef50_Q489F6 Cluster: NifR3/Smm1 family protein; n=2; Proteob... 52 1e-05
UniRef50_Q1N033 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_Q056Y8 Cluster: TRNA-dihydrouridine synthase A; n=1; Bu... 52 1e-05
UniRef50_A1RNI1 Cluster: TIM-barrel protein, yjbN family; n=30; ... 52 1e-05
UniRef50_A3LUK5 Cluster: Dihydrouridine synthase of tRNA; n=6; S... 52 1e-05
UniRef50_UPI0000499494 Cluster: conserved hypothetical protein; ... 51 2e-05
UniRef50_Q012U0 Cluster: Nitrogen regulation family protein; n=2... 51 2e-05
UniRef50_A7HK00 Cluster: Dihydrouridine synthase DuS; n=4; Therm... 51 3e-05
UniRef50_A4BCJ5 Cluster: NifR3/Smm1 family protein; n=2; Gammapr... 51 3e-05
UniRef50_A4AAB0 Cluster: TRNA-dihydrouridine synthase C; n=2; un... 51 3e-05
UniRef50_UPI0000E472BC Cluster: PREDICTED: similar to tRNA-dihyd... 50 3e-05
UniRef50_Q2UL89 Cluster: Uncharacterized conserved protein; n=15... 50 3e-05
UniRef50_A6DU09 Cluster: Dihydrouridine synthase family protein;... 50 5e-05
UniRef50_Q89LQ7 Cluster: Nitrogen regulation protein; n=22; Alph... 50 6e-05
UniRef50_O51243 Cluster: Putative uncharacterized protein BB0225... 50 6e-05
UniRef50_Q1JWD3 Cluster: Dihydrouridine synthase, DuS; n=1; Desu... 50 6e-05
UniRef50_Q9V0Y6 Cluster: Dihydroorotate dehydrogenase; n=8; Eury... 50 6e-05
UniRef50_Q7UXK8 Cluster: Putative uncharacterized protein; n=3; ... 49 8e-05
UniRef50_Q6M9N8 Cluster: Putative uncharacterized protein; n=1; ... 49 8e-05
UniRef50_A6EDJ3 Cluster: Probable TIM-barrel protein, NifR3 fami... 49 8e-05
UniRef50_Q9FI41 Cluster: Emb|CAB87804.1; n=7; Magnoliophyta|Rep:... 49 8e-05
UniRef50_Q0F181 Cluster: Dihydrouridine synthase TIM-barrel prot... 49 1e-04
UniRef50_Q04VP3 Cluster: TRNA-dihydrouridine synthase; n=4; Lept... 49 1e-04
UniRef50_A5EVV4 Cluster: Dihydrouridine synthase; n=1; Dicheloba... 49 1e-04
UniRef50_A4TZK1 Cluster: Dihydrouridine synthase, DuS; n=4; Prot... 49 1e-04
UniRef50_A1AW94 Cluster: TIM-barrel protein, yjbN family; n=1; C... 49 1e-04
UniRef50_Q5HJT5 Cluster: Probable tRNA-dihydrouridine synthase; ... 49 1e-04
UniRef50_A1IF01 Cluster: Dihydrouridine synthase family protein;... 48 1e-04
UniRef50_Q7X346 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_UPI0000DAE45A Cluster: hypothetical protein Rgryl_01000... 48 2e-04
UniRef50_Q2RZL4 Cluster: NifR3 family enzyme; n=1; Salinibacter ... 48 2e-04
UniRef50_Q7UBC5 Cluster: tRNA-dihydrouridine synthase A; n=231; ... 48 2e-04
UniRef50_Q2NEG1 Cluster: PyrD; n=1; Methanosphaera stadtmanae DS... 47 3e-04
UniRef50_Q2IG49 Cluster: Dihydrouridine synthase TIM-barrel prot... 47 4e-04
UniRef50_Q4Q231 Cluster: Dihydrouridine synthase domain protein-... 47 4e-04
UniRef50_A1AT39 Cluster: Dihydrouridine synthase, DuS; n=7; Desu... 46 6e-04
UniRef50_Q06053 Cluster: tRNA-dihydrouridine synthase 3; n=6; Sa... 46 7e-04
UniRef50_Q5ZVH8 Cluster: Zinc binding TIM barrel protein, YjbN f... 46 0.001
UniRef50_Q8SUY1 Cluster: Putative uncharacterized protein ECU07_... 46 0.001
UniRef50_Q6AJ40 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_A5GPV9 Cluster: TRNA-dihydrouridine synthase A; n=21; C... 45 0.002
UniRef50_A0EAZ6 Cluster: Chromosome undetermined scaffold_87, wh... 45 0.002
UniRef50_O31546 Cluster: Probable tRNA-dihydrouridine synthase 2... 45 0.002
UniRef50_UPI000058804E Cluster: PREDICTED: similar to MGC53781 p... 44 0.002
UniRef50_Q2RTR9 Cluster: Dihydrouridine synthase TIM-barrel prot... 44 0.002
UniRef50_A4RVX6 Cluster: Predicted protein; n=2; Ostreococcus|Re... 44 0.002
UniRef50_Q9VIS4 Cluster: CG10463-PA; n=3; Sophophora|Rep: CG1046... 44 0.002
UniRef50_Q7UKE8 Cluster: Putative uncharacterized protein; n=2; ... 44 0.003
UniRef50_A1IED4 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_Q01ML2 Cluster: H0613H07.1 protein; n=10; Eukaryota|Rep... 44 0.004
UniRef50_Q5FTP7 Cluster: Nitrogen assimilation regulatory protei... 43 0.005
UniRef50_A6PPM6 Cluster: Dihydrouridine synthase, DuS; n=1; Vict... 43 0.005
UniRef50_A5N517 Cluster: Predicted NADH oxidase; n=1; Clostridiu... 43 0.005
UniRef50_Q2HDP2 Cluster: Putative uncharacterized protein; n=1; ... 43 0.005
UniRef50_A0Z3E6 Cluster: Dihydroorotate dehydrogenase/oxidoreduc... 43 0.007
UniRef50_Q582L4 Cluster: TRNA-dihydrouridine synthase 3, putativ... 43 0.007
UniRef50_Q8A2H9 Cluster: Putative nifR3 family TIM-barrel enzyme... 42 0.009
UniRef50_Q83D40 Cluster: TIM-barrel protein, yjbN family; n=7; B... 42 0.012
UniRef50_A5FPW7 Cluster: Dihydroorotate dehydrogenase family pro... 42 0.012
UniRef50_Q9UTH9 Cluster: tRNA dihydrouridine synthase Dus3; n=1;... 42 0.012
UniRef50_A7DKP5 Cluster: Dihydrouridine synthase, DuS; n=2; Meth... 42 0.016
UniRef50_A4BWB1 Cluster: Putative uncharacterized protein; n=5; ... 41 0.021
UniRef50_A7AWB5 Cluster: Dihydrouridine synthase (Dus) domain co... 41 0.021
UniRef50_Q9PGB5 Cluster: tRNA-dihydrouridine synthase A; n=8; Pr... 41 0.021
UniRef50_Q979G6 Cluster: Dihydroorotate dehydrogenase; n=4; Ther... 41 0.028
UniRef50_Q38BB4 Cluster: TRNA-dihydrouridine synthase 2, putativ... 40 0.037
UniRef50_Q8G7W8 Cluster: Possible NifR3-like protein; n=4; Bifid... 40 0.049
UniRef50_Q0C0N1 Cluster: Putative tRNA-dihydrouridine synthase; ... 40 0.049
UniRef50_Q6C4K3 Cluster: Similar to DEHA0D12364g Debaryomyces ha... 40 0.049
UniRef50_Q7PVV7 Cluster: ENSANGP00000016833; n=2; Endopterygota|... 40 0.065
UniRef50_Q9K9W1 Cluster: Dihydroorotate dehydrogenase; n=1; Baci... 40 0.065
UniRef50_Q73P17 Cluster: Dihydroorotate dehydrogenase/oxidoreduc... 39 0.085
UniRef50_Q090Q9 Cluster: TRNA-dihydrouridine synthase B; n=2; Cy... 39 0.085
UniRef50_A6GGZ7 Cluster: Putative uncharacterized protein; n=2; ... 39 0.085
UniRef50_A5KKR3 Cluster: Putative uncharacterized protein; n=1; ... 39 0.085
UniRef50_Q4Q669 Cluster: Dihydrouridine synthase (Dus), putative... 39 0.085
UniRef50_Q8TXU6 Cluster: Dihydroorotate dehydrogenase; n=1; Meth... 39 0.085
UniRef50_Q73RG6 Cluster: Dihydrouridine synthase, putative; n=1;... 39 0.11
UniRef50_A5WG83 Cluster: TIM-barrel protein, yjbN family; n=4; M... 39 0.11
UniRef50_O53835 Cluster: Probable tRNA-dihydrouridine synthase; ... 39 0.11
UniRef50_A5EXU5 Cluster: TRNA-dihydrouridine synthase A; n=1; Di... 38 0.15
UniRef50_A1X3A1 Cluster: Putative NADH:flavin oxidoreductase; n=... 38 0.15
UniRef50_Q17M24 Cluster: tRNA-dihydrouridine synthase; n=1; Aede... 38 0.15
UniRef50_A7IA09 Cluster: Thiamine-phosphate pyrophosphorylase; n... 38 0.15
UniRef50_Q97DM0 Cluster: Predicted TIM-barrel enzyme, nifR3 fami... 38 0.20
UniRef50_O51679 Cluster: Histidine phosphokinase/phophatase, put... 38 0.20
UniRef50_Q9RDC6 Cluster: Putative uncharacterized protein SCO249... 38 0.26
UniRef50_Q1EYG5 Cluster: NADH:flavin oxidoreductase/NADH oxidase... 38 0.26
UniRef50_A4S3Q5 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 37 0.34
UniRef50_Q8PW56 Cluster: Dihydroorotate dehydrogenase; n=14; Eur... 37 0.46
UniRef50_A2DZN8 Cluster: Oxidoreductase, FAD/FMN-binding family ... 36 0.60
UniRef50_Q5KC68 Cluster: TRNA dihydrouridine synthase, putative;... 36 0.60
UniRef50_Q9A7I4 Cluster: Nitrogen regulation protein Nifr3; n=2;... 36 0.80
UniRef50_Q97K75 Cluster: NADH:flavin oxidoreductase, possible NA... 36 0.80
UniRef50_A4YUQ6 Cluster: Putative tRNA-dihydrouridine synthase; ... 36 0.80
UniRef50_A4EV41 Cluster: Oxidoreductase, FAD/FMN-binding protein... 36 0.80
UniRef50_Q24833 Cluster: Putative nitrogen fixation regulatory p... 36 0.80
UniRef50_Q1G992 Cluster: Dihydroorotate dehydrogenase; n=3; Lact... 36 1.1
UniRef50_Q8ESS1 Cluster: 1-(5-phosphoribosyl)-5-[(5-phosphoribos... 36 1.1
UniRef50_Q4AHG7 Cluster: Dihydrouridine synthase, DuS; n=1; Chlo... 35 1.4
UniRef50_A7BE39 Cluster: Putative uncharacterized protein; n=1; ... 35 1.4
UniRef50_Q0AWX0 Cluster: NADH:flavin oxidoreductase, Old Yellow ... 35 1.8
UniRef50_Q010A0 Cluster: tRNA-dihydrouridine synthase; n=1; Ostr... 35 1.8
UniRef50_A6P2M8 Cluster: Putative uncharacterized protein; n=1; ... 34 2.4
UniRef50_A3VNG3 Cluster: Dihydrouridine synthase TIM-barrel prot... 34 2.4
UniRef50_A2DV72 Cluster: 4Fe-4S binding domain containing protei... 34 2.4
UniRef50_A0LHK5 Cluster: 1-(5-phosphoribosyl)-5-[(5-phosphoribos... 34 2.4
UniRef50_Q65PP9 Cluster: Lj928 prophage protein; n=24; root|Rep:... 34 3.2
UniRef50_Q09E70 Cluster: Thiazole biosynthesis protein ThiG; n=1... 34 3.2
UniRef50_A7AAN4 Cluster: Putative uncharacterized protein; n=2; ... 33 4.2
UniRef50_A0DW78 Cluster: Chromosome undetermined scaffold_662, w... 33 4.2
UniRef50_A6VYA3 Cluster: TIM-barrel protein, yjbN family; n=8; P... 33 5.6
UniRef50_Q8RI59 Cluster: Thiamine-phosphate pyrophosphorylase; n... 33 5.6
UniRef50_O29513 Cluster: Dihydroorotate dehydrogenase; n=1; Arch... 33 5.6
UniRef50_Q193G0 Cluster: DnaQ family exonuclease/DinG family hel... 32 9.8
UniRef50_A1BEJ0 Cluster: NADH:flavin oxidoreductase/NADH oxidase... 32 9.8
UniRef50_Q013U5 Cluster: CG3645-PB, isoform B; n=1; Ostreococcus... 32 9.8
UniRef50_A2DPI6 Cluster: Putative uncharacterized protein; n=1; ... 32 9.8
UniRef50_Q0CTZ8 Cluster: Putative uncharacterized protein; n=2; ... 32 9.8
UniRef50_Q466J2 Cluster: NADH-dependent flavine oxidoreductase; ... 32 9.8
>UniRef50_UPI0000D5693C Cluster: PREDICTED: similar to
dihydrouridine synthase 4-like; n=3; Coelomata|Rep:
PREDICTED: similar to dihydrouridine synthase 4-like -
Tribolium castaneum
Length = 451
Score = 258 bits (631), Expect = 1e-67
Identities = 119/216 (55%), Positives = 158/216 (73%), Gaps = 4/216 (1%)
Query: 1 MKEICDIMEKFADAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQN 60
+K D+M+ FAD KI +K+CAPMVRYSK+ FR LV+++N DLC+TPMILADSFC++
Sbjct: 9 LKHSTDVMQLFADKKI----VKICAPMVRYSKLQFRNLVKSYNCDLCYTPMILADSFCKS 64
Query: 61 SKARANEFMTTTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYG 120
KARANEF T D P+I QFAAN DFV A+ +V P+ DGVDLNCGCPQ+WA G G
Sbjct: 65 GKARANEFTTNMNDTPLITQFAANKVYDFVGAAYMVSPFCDGVDLNCGCPQRWAKLQGLG 124
Query: 121 CSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEE 180
C +L KPE+IYD+VK RNV+P F++SVK+RL D++++V +C+QLE CGV+FLT
Sbjct: 125 CIMLEKPEVIYDLVKQCRNVIPKPFTVSVKLRLQKDLRRSVEICRQLEHCGVSFLTVHGR 184
Query: 181 HCTKSSGPVDINGLKEVREALSVPMVANGGVKHLND 216
+ +G V+ L + +++VP+VANGGVK L D
Sbjct: 185 TPDQLTGEVNKEALNLIVGSVNVPVVANGGVKSLED 220
>UniRef50_Q0IFC6 Cluster: tRNA-dihydrouridine synthase; n=2;
Culicidae|Rep: tRNA-dihydrouridine synthase - Aedes
aegypti (Yellowfever mosquito)
Length = 391
Score = 249 bits (609), Expect = 5e-65
Identities = 114/209 (54%), Positives = 153/209 (73%), Gaps = 2/209 (0%)
Query: 11 FADAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMT 70
F +A+ +YLK+CAPMVRYSK+ FR LVR++ DL FT MI+ADSFCQ+ KAR NEF T
Sbjct: 14 FREARAKDSYLKICAPMVRYSKLEFRNLVRSYGTDLTFTSMIMADSFCQSEKARLNEFTT 73
Query: 71 TTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEII 130
D PVIAQFAA N DF+ A+++ +PYVDGVDLNCGCPQ+WAM+DGYG +LL PE+I
Sbjct: 74 NRDDTPVIAQFAAKNAVDFLSATEMTFPYVDGVDLNCGCPQRWAMQDGYGSALLRTPELI 133
Query: 131 YDIVKGLRNVLPNKFSISVKIRLL-NDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGP 188
D++ +R LP+ FS+SVK+RLL + T+ +C+QLE CG+TF+T K++ P
Sbjct: 134 ADMLSTVRRNLPSTFSVSVKVRLLQKSLSATIDMCRQLEACGITFITVHGRTPAQKTNIP 193
Query: 189 VDINGLKEVREALSVPMVANGGVKHLNDA 217
V+ LKE++ +L +P+VANG + L DA
Sbjct: 194 VNQEALKEIKSSLGIPVVANGDIFSLQDA 222
>UniRef50_UPI00015B403F Cluster: PREDICTED: similar to MGC79829
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to MGC79829 protein - Nasonia vitripennis
Length = 346
Score = 245 bits (599), Expect = 8e-64
Identities = 110/198 (55%), Positives = 147/198 (74%)
Query: 22 KVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQF 81
KVCAPMVRYSK+ FRTLVR ++ D+CFTPMILADSF Q+SKAR +EF T D P+I QF
Sbjct: 16 KVCAPMVRYSKLPFRTLVRKYDCDICFTPMILADSFVQSSKARDSEFSTNEGDSPLIVQF 75
Query: 82 AANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
AA DDFV+A+++V PY +GVDLNCGCPQ+WA+KDGYG LL+KP+++ ++V +RN +
Sbjct: 76 AAKEVDDFVEATEMVAPYSNGVDLNCGCPQRWALKDGYGADLLTKPQLVKELVSNVRNRI 135
Query: 142 PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSGPVDINGLKEVREAL 201
P F++SVKIR+L DIKKT+ + +E GV+FLT + P+D++ LK VR +
Sbjct: 136 PKPFTVSVKIRILKDIKKTIEFSRAIEHAGVSFLTVHARTPDMRNEPIDLDSLKLVRSCV 195
Query: 202 SVPMVANGGVKHLNDATT 219
+PM+ANG V+ DA T
Sbjct: 196 HLPMIANGNVRSFEDAKT 213
>UniRef50_O95620 Cluster: tRNA-dihydrouridine synthase 4-like; n=28;
Eumetazoa|Rep: tRNA-dihydrouridine synthase 4-like -
Homo sapiens (Human)
Length = 317
Score = 216 bits (527), Expect = 4e-55
Identities = 96/198 (48%), Positives = 144/198 (72%), Gaps = 1/198 (0%)
Query: 21 LKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQ 80
+KVCAPMVRYSK+ FRTLVR ++ DLC+TPMI+A F ++ KAR +EF T D P+I Q
Sbjct: 28 VKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 87
Query: 81 FAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
FAAN+ DA+++V PY +G+D+NCGCPQ+WAM +GYG L++KPE++ D+VK +RN
Sbjct: 88 FAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQ 147
Query: 141 LPNK-FSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSGPVDINGLKEVRE 199
+ FS+S+KIR+ +D+K+TV LCQ+ E GV+++T + PV + +K ++E
Sbjct: 148 VETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQPVHYDSIKIIKE 207
Query: 200 ALSVPMVANGGVKHLNDA 217
+S+P++ANG ++ L +A
Sbjct: 208 NMSIPVIANGDIRSLKEA 225
>UniRef50_Q9VJ06 Cluster: CG10495-PA; n=2; Sophophora|Rep:
CG10495-PA - Drosophila melanogaster (Fruit fly)
Length = 396
Score = 214 bits (522), Expect = 2e-54
Identities = 103/217 (47%), Positives = 146/217 (67%), Gaps = 7/217 (3%)
Query: 6 DIMEKFADAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARA 65
DI FA+A+ + +++V APMVRYSK+ FR LVR L FTPM+++DS + KAR
Sbjct: 11 DIAAMFAEAQSD--FVRVSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQ 68
Query: 66 NEFMTTTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLS 125
NEF T D P+IAQFAA + +FV +++L+YPYVDG+DLNCGCPQ WAM GYGC +L
Sbjct: 69 NEFSTGADDQPLIAQFAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGMLR 128
Query: 126 KPEIIYDIVKGLRNVLPNKFSISVKIRLL---NDIKKTVILCQQLEKCGVTFLT--SMEE 180
+PE+++ +V+ +R LP FS+SVK+RLL +++T+ L +QLE GVTFLT
Sbjct: 129 QPELVHQVVQEVRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTP 188
Query: 181 HCTKSSGPVDINGLKEVREALSVPMVANGGVKHLNDA 217
S +DI + +VR++L +P++ NG V+ DA
Sbjct: 189 AQKHSKDTLDIPAMSQVRQSLQIPLIVNGNVESYRDA 225
>UniRef50_Q54ES7 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 344
Score = 177 bits (431), Expect = 2e-43
Identities = 83/199 (41%), Positives = 133/199 (66%), Gaps = 3/199 (1%)
Query: 20 YLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIA 79
++K+ APMVR+S++ FR LV+ + D+ +TPMI+A F ++ AR ++F D P+I
Sbjct: 55 FMKIQAPMVRFSRLPFRMLVKKWGCDITYTPMIMAAEFNRSEAARDSDFTINKLDEPLIV 114
Query: 80 QFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
QF NN ++ V A++ V Y G+D+NCGCPQ+W MK+G+G +LL PE IYD+VK + N
Sbjct: 115 QFGVNNAEELVSAAEKVKDYCQGIDINCGCPQRWVMKEGFGANLLLHPERIYDMVKQINN 174
Query: 140 VLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVR 198
+P IS+KIR+ +D+K T+ L ++ E+ GV+++T KSS PVD + +K V+
Sbjct: 175 RVP--IPISIKIRVQSDLKDTIELAKRAERIGVSWITVHGRTSAMKSSHPVDYDAIKLVK 232
Query: 199 EALSVPMVANGGVKHLNDA 217
+ +++P+ ANG V L+ +
Sbjct: 233 DNVTLPVFANGDVFTLSQS 251
>UniRef50_Q09504 Cluster: Uncharacterized tRNA-dihydrouridine
synthase-like protein C45G9.2; n=2; Caenorhabditis|Rep:
Uncharacterized tRNA-dihydrouridine synthase-like
protein C45G9.2 - Caenorhabditis elegans
Length = 284
Score = 174 bits (424), Expect = 1e-42
Identities = 85/192 (44%), Positives = 130/192 (67%), Gaps = 1/192 (0%)
Query: 27 MVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAANNR 86
MVRYSK+ FR LVR ++ D+CFTPMI A +F ++ K R++E D P+I QFA ++
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDP 60
Query: 87 DDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN-KF 145
+A+++VY GVDLNCGCP+ G+G +LLSKPE++ D+V+ R +P+ F
Sbjct: 61 FVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120
Query: 146 SISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSGPVDINGLKEVREALSVPM 205
S+S+KIR+ +DI+KTV LC++ E GVT LT ++ + P+DI L+ V++++SVP+
Sbjct: 121 SVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEPIDIQALRIVKDSVSVPI 180
Query: 206 VANGGVKHLNDA 217
+ANGG+ +A
Sbjct: 181 IANGGITTREEA 192
>UniRef50_O74553 Cluster: tRNA dihydrouridine synthase Dus4; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus4 - Schizosaccharomyces pombe (Fission
yeast)
Length = 326
Score = 170 bits (413), Expect = 3e-41
Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 2/206 (0%)
Query: 10 KFADAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFM 69
K + K + + APMVRYSK+ FR LVR++N D+ +TPMILA F + K R +F
Sbjct: 10 KIFEINKGKRPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFL-HPKGRYFDFS 68
Query: 70 TTTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEI 129
T D +I QF ++ A++LV PYVDG+ +NCGCPQ WA+++G G +LL +PE
Sbjct: 69 TNDADASLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEK 128
Query: 130 IYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGP 188
++ +V+ +++ L F VKIR+ D+ KT L Q +EK G +T +SS P
Sbjct: 129 VHKLVRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTRQDRSSFP 188
Query: 189 VDINGLKEVREALSVPMVANGGVKHL 214
V+++ ++EVR + +P+VANG VK L
Sbjct: 189 VNLDAIREVRPCVQIPVVANGDVKSL 214
>UniRef50_A7EMF2 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 342
Score = 154 bits (373), Expect = 2e-36
Identities = 82/213 (38%), Positives = 123/213 (57%), Gaps = 6/213 (2%)
Query: 11 FADAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMT 70
F AK L CAPMVRYSK+ FR V + DLC+TPMILA F ++ AR ++F T
Sbjct: 21 FDIAKQEGRPLYTCAPMVRYSKLAFRETVAQYGVDLCWTPMILAKEFNRSVFARDSDFTT 80
Query: 71 TTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEII 130
+ T P IAQF + + ++ L+ PY++G+D+NCGCPQ WA G +L+ K E++
Sbjct: 81 SPTSTPTIAQFGVCSPLEISRSTTLIAPYINGIDINCGCPQSWACACSIGAALMHKRELV 140
Query: 131 YDIVKGLRNVL-----PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTK 184
++VK ++ L K ++SVKIR+ D++ TV + ++ GV F+T T
Sbjct: 141 AEMVKEAKSALKREGYEGKKTVSVKIRIHRDLRDTVDFIKTVQDAGVDFITIHGRMRSTP 200
Query: 185 SSGPVDINGLKEVREALSVPMVANGGVKHLNDA 217
SS PV++ +K + +VP V+NG + L A
Sbjct: 201 SSHPVNLEAIKLLNTHTTVPTVSNGDITSLRSA 233
>UniRef50_Q5A4Y0 Cluster: Potential tRNA dihydrouridine synthase;
n=2; Saccharomycetales|Rep: Potential tRNA
dihydrouridine synthase - Candida albicans (Yeast)
Length = 339
Score = 153 bits (371), Expect = 3e-36
Identities = 73/196 (37%), Positives = 121/196 (61%), Gaps = 2/196 (1%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ PMVRYSK+ FR L R ++ D+ +TPMILA F +N AR+ +F T +D VI Q
Sbjct: 29 IAGPMVRYSKLPFRELCRFYDVDIVYTPMILAREFVRNEVARSTDFTTNDSDKCVIVQVG 88
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
NN DDF+ ++++P+VDG+ +NCGCP K +++G G +L+S P+++ +++K ++
Sbjct: 89 VNNVDDFMKFIEMIHPFVDGIGINCGCPIKEQVREGIGAALMSDPDLVAELIKTAKDKYG 148
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVRE-A 200
+ I KIR+ DI +T+ ++ + G LT T+SS PV+++ +K +RE
Sbjct: 149 DSICIDTKIRIHRDINQTIDFVNKVVEAGTDTLTVHGRTKNTRSSVPVNLDAIKIIRENV 208
Query: 201 LSVPMVANGGVKHLND 216
++P++ANG L D
Sbjct: 209 TTIPVIANGDCFTLTD 224
>UniRef50_Q06063 Cluster: tRNA-dihydrouridine synthase 4; n=10;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 4 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 367
Score = 146 bits (354), Expect = 4e-34
Identities = 72/198 (36%), Positives = 118/198 (59%), Gaps = 4/198 (2%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ PMVRYSK+ FR L R +N D+ ++PMILA + +N AR ++ T D P+I Q
Sbjct: 42 IAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPLIVQVG 101
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
NN D + ++V PY DG+ +NCGCP K +++G GC+L+ +++ +V +++
Sbjct: 102 VNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIYNSDLLCSMVHAVKDKYG 161
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVREAL 201
+K I KIR+ + +TV LC++L GV ++T T+SS P +++ +K + E +
Sbjct: 162 DKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRSSQPANLDAIKYIIENI 221
Query: 202 S---VPMVANGGVKHLND 216
S VP++ANG L+D
Sbjct: 222 SDKNVPVIANGDCFKLSD 239
>UniRef50_Q583Y8 Cluster: TRNA-dihydrouridine synthase 4, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 4,
putative - Trypanosoma brucei
Length = 419
Score = 145 bits (351), Expect = 9e-34
Identities = 79/210 (37%), Positives = 124/210 (59%), Gaps = 8/210 (3%)
Query: 10 KFADAKINKTY---LKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARAN 66
++A ++ K Y LK+ APMVR S+ FR L R + D+ +T MI+ADSF + AR
Sbjct: 46 EWACQRMEKAYGSILKIQAPMVRCSRPAFRKLCRLWGTDISYTHMIMADSFACSEAARQA 105
Query: 67 EFMTTTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSK 126
EF + + +I Q A+++ A+ +V P+ D +DLNCGCPQ+ M DG G +LL
Sbjct: 106 EFSIYSGETRLITQLASSSGPTAATAAAIVAPWCDAIDLNCGCPQRRVMADGLGAALLRN 165
Query: 127 PEIIYDIVKGLRNVLPNKFSIS--VKIRLLNDIKKTVILCQQLEKCGVTFLT--SMEEHC 182
PE++ D V+ +RN L + VK+R+ +D++ +V +Q E G ++T +C
Sbjct: 166 PEVVADTVRCVRNALEGGVELPCVVKMRVKDDVRLSVDFARQCEAAGAAWITVHGRTPNC 225
Query: 183 TKSSGPVDINGLKEVREALSVPMVANGGVK 212
+ + PV + + +REAL VP+VANGGV+
Sbjct: 226 S-AHAPVRFDAINTIREALGVPVVANGGVR 254
>UniRef50_Q4Q391 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 493
Score = 134 bits (325), Expect = 1e-30
Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 27/225 (12%)
Query: 20 YLKVC---APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFP 76
Y +C APMVR S+ FR + R + + +T M++A+SF ++ AR EF +
Sbjct: 93 YCSLCLIQAPMVRCSRPAFRQVCRAWGTRVSYTHMLMAESFVKSPHARHAEFARYEGENR 152
Query: 77 VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
++AQ AA + A+ L+ PY DG+DLNCGCPQ+WAMK+G G +LL +PE + D+V+
Sbjct: 153 LVAQLAAKSGPAAAQAALLLRPYCDGIDLNCGCPQRWAMKEGIGAALLDQPERVADMVRS 212
Query: 137 LRNVLPN------------KFS-----------ISVKIRLLNDIKKTVILCQQLEKCGVT 173
+RN +P+ ++S VK+R+ +D++++V +Q E GV+
Sbjct: 213 IRNAMPDGSTAPMIVGNGGEYSSCTSAVPPFLPCVVKMRIKDDLRRSVDFARQCEAAGVS 272
Query: 174 FLTSMEEHCT-KSSGPVDINGLKEVREALSVPMVANGGVKHLNDA 217
+LT T SS V +K +RE LSVP+V NGGV ++ A
Sbjct: 273 WLTVHGRTPTCHSSTAVQFEAVKLIRENLSVPVVLNGGVTDVSTA 317
>UniRef50_A5K1E0 Cluster: tRNA-dihydrouridine synthase, putative;
n=5; Plasmodium|Rep: tRNA-dihydrouridine synthase,
putative - Plasmodium vivax
Length = 340
Score = 128 bits (310), Expect = 8e-29
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 8/199 (4%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ APMV S++ FR L RN+N L FTPM+ A +F ++ K R + F + D PVIAQF
Sbjct: 29 ILAPMVDLSELAFRLLCRNYNCHLTFTPMLHAKNFVEHEKYRKSYFQSCEKDEPVIAQFC 88
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
NN ++A + + V+ VDLN GCPQ+ A K YG LL K + + ++V + N
Sbjct: 89 GNNSKIILNAIEYIKNEVNAVDLNLGCPQQIAKKGNYGAFLLQKHDEVVNLVSDITNNC- 147
Query: 143 NKFSISVKIRLLN-DIKKTVILCQQLEKCGVTFLT----SMEEHCTKSSGPVDINGLKEV 197
I+ KIR ++ D +KT+ LC L+ V +T + EE T D +K +
Sbjct: 148 -NIPITCKIRKIDQDYQKTLNLCYDLQSRNVKMITVHGRTKEEKGTNIK-QCDYEIIKII 205
Query: 198 REALSVPMVANGGVKHLND 216
+E L++P++ANG ++H D
Sbjct: 206 KERLNIPIIANGSIEHFED 224
>UniRef50_Q54XQ6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 435
Score = 127 bits (307), Expect = 2e-28
Identities = 73/202 (36%), Positives = 109/202 (53%), Gaps = 5/202 (2%)
Query: 18 KTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPV 77
K+ K APMV ++ + FR L R + AD+ +TPM + +F R + + T D P+
Sbjct: 50 KSPKKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRDYWSTCPEDRPL 109
Query: 78 IAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGL 137
+ QF N + V A+K + + D +DLN GCPQ+ A + YG LL KP II IV+ L
Sbjct: 110 VVQFCGNEPEWVVKAAKYIEDHCDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQEL 169
Query: 138 RNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDINGL 194
+ K I KIRLL ++ T+ L QL++ G LT +E +SG + +
Sbjct: 170 HKHI--KVPIFCKIRLLPNLDDTIKLALQLQEAGCQLLTIHGRTKEQKGHNSGIANWKAI 227
Query: 195 KEVREALSVPMVANGGVKHLND 216
+ +RE LS+P++ANG V D
Sbjct: 228 RTIREQLSIPVIANGSVVQYED 249
>UniRef50_Q9FH91 Cluster: Gb|AAF51525.1; n=6; Magnoliophyta|Rep:
Gb|AAF51525.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 423
Score = 123 bits (297), Expect = 3e-27
Identities = 67/203 (33%), Positives = 108/203 (53%), Gaps = 5/203 (2%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ APMV S++ FR L + + A +TPM+ + F + K R EF T D P+ QF
Sbjct: 91 IVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCKEDRPLFVQFC 150
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
AN+ D ++A+K V PY D VD+N GCPQ+ A + YG L+ ++ +V+ L L
Sbjct: 151 ANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAQNL- 209
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSGP---VDINGLKEVRE 199
+S KIR+ +++ T+ + LE G + L + G D + +KEV+
Sbjct: 210 -NVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWSAIKEVKN 268
Query: 200 ALSVPMVANGGVKHLNDATTYMK 222
A+ +P++ANG V+ + D +K
Sbjct: 269 AMRIPVLANGNVRCIEDVDNCIK 291
>UniRef50_Q9VPM1 Cluster: CG3645-PA, isoform A; n=2; Diptera|Rep:
CG3645-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 505
Score = 123 bits (297), Expect = 3e-27
Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 5/197 (2%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V APMV S++ +R L R + A+LC++PM A+ F + K R + T D P+I QF
Sbjct: 31 VVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLIIQFC 90
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
N+ +DA+ L + D VD+N GCPQ A + YG L + E++ +IV L L
Sbjct: 91 GNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTLHAKL- 149
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDINGLKEVRE 199
++ KIR+ D++KT+ + LE G LT E +G + N +K VR+
Sbjct: 150 -AVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNYIKNVRQ 208
Query: 200 ALSVPMVANGGVKHLND 216
+ +PM+ANG + L+D
Sbjct: 209 HIKIPMLANGNILALDD 225
>UniRef50_A7AQM0 Cluster: Dihydrouridine synthase, putative; n=1;
Babesia bovis|Rep: Dihydrouridine synthase, putative -
Babesia bovis
Length = 355
Score = 122 bits (295), Expect = 5e-27
Identities = 68/199 (34%), Positives = 109/199 (54%), Gaps = 7/199 (3%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V APMV S++ FR L R +N DL +TPM+ F +N K RA F T+ D P+IAQ
Sbjct: 15 VAAPMVNQSELPFRLLCRRYNVDLTYTPMLHGRIFVENEKYRAVHFQTSDDDRPLIAQVC 74
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
++ A++L+ +V VDLN GCPQ A YG LL +P+++ IV + +
Sbjct: 75 GDDAGTITQAARLLKGHVSAVDLNLGCPQAIAKDGHYGSFLLDEPDLVTGIVSRVTREV- 133
Query: 143 NKFSISVKIRLL--NDIKKTVILCQQLEKCGVTFLTSMEEHCTKSS---GPVDINGLKEV 197
+++ KIR + + ++ T+ LC LE+ G LT H ++ G D + ++ +
Sbjct: 134 -GIAVTCKIRKVDKDSLQSTLNLCYSLEQSGCKALTVHGRHRSEKGTNVGAADWDAIRII 192
Query: 198 REALSVPMVANGGVKHLND 216
+ L +P++ANGG++ D
Sbjct: 193 KSRLRIPVIANGGIETFAD 211
>UniRef50_Q9XVN8 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 527
Score = 122 bits (293), Expect = 9e-27
Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 7/211 (3%)
Query: 17 NKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFP 76
N+ KV APMV S++ FR R + A L FTPMI A F + R N D P
Sbjct: 70 NQRITKVLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRP 129
Query: 77 VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
++ QF AN D F+ A +LV DGVDLN GCPQ A + YG L + ++I ++V
Sbjct: 130 LVVQFCANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSA 189
Query: 137 LRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDING 193
+R+ + IS KIR+ +D ++TV ++L G T LT + +G D +
Sbjct: 190 VRDYC--RLPISCKIRVRDDRQQTVEYAKRLVDAGATMLTVHGRTRDMKGAETGLADWSR 247
Query: 194 LKEVREALS--VPMVANGGVKHLNDATTYMK 222
+++V EA+ VP++ANG ++ D M+
Sbjct: 248 IRDVVEAVGSRVPVMANGNIQFPGDVERCMQ 278
>UniRef50_Q5KPM6 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 407
Score = 121 bits (292), Expect = 1e-26
Identities = 61/145 (42%), Positives = 94/145 (64%), Gaps = 5/145 (3%)
Query: 77 VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
+IAQFA+ N DA++L+ PYVDG+DLNCGCPQ+WA +G GC+LL KPE++ D+V+G
Sbjct: 152 LIAQFASPNAKSLADAAELISPYVDGIDLNCGCPQRWAYNEGIGCALLRKPELVRDMVRG 211
Query: 137 LRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT--SMEEHCTKSSGPVDINGL 194
+++ + + +S+KIR+ ++ +KT L + G++ LT H S+ PV++ G+
Sbjct: 212 VKDRMGWGWPVSIKIRIDSEQEKTEQLISNALQAGISHLTIHGRTRH-QPSTDPVNLPGI 270
Query: 195 KEVREAL--SVPMVANGGVKHLNDA 217
K + + VP VANG V L DA
Sbjct: 271 KFAVDCVKGEVPCVANGDVWELEDA 295
Score = 44.4 bits (100), Expect = 0.002
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTD 74
V AP+VR SK+ FR L + + TPMILA+ F + AR ++F T++ +
Sbjct: 35 VLAPLVRCSKLPFRHLTSLYETHITHTPMILAEEFSRAQIARTSDFSTSSNE 86
>UniRef50_A4S141 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 307
Score = 121 bits (291), Expect = 2e-26
Identities = 65/197 (32%), Positives = 113/197 (57%), Gaps = 7/197 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APMV S++ FR L + + A L +TPMI A F ++ K R F T+T D P++AQF AN
Sbjct: 21 APMVDQSELAFRELCKRYGATLGYTPMIHARLFVESPKYRREIFSTSTRDRPLLAQFCAN 80
Query: 85 NRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNK 144
+ + + A+ ++ PY DGVD+N GCPQ+ A + YG L+ + + +++ L LP
Sbjct: 81 DPEILLRAATMIAPYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEALIRKLDEELP-- 138
Query: 145 FSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSGPVDING----LKEVREA 200
++ KIR+ +D++ T+ + +E G + ++ + DI ++ +++A
Sbjct: 139 VPVTAKIRVYDDLETTLKYAKMVEAAGAQ-IVAVHGRTREQKRCADIRANWAYIRAIKDA 197
Query: 201 LSVPMVANGGVKHLNDA 217
L VP++ANG ++ L +A
Sbjct: 198 LKVPVLANGDIRSLAEA 214
>UniRef50_Q5CSA9 Cluster: Dus1p, tRNA dihydrouridine synthase; n=2;
Cryptosporidium|Rep: Dus1p, tRNA dihydrouridine synthase
- Cryptosporidium parvum Iowa II
Length = 409
Score = 117 bits (282), Expect = 2e-25
Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 6/199 (3%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V APMV S++ FR + + + DL ++PM + F + R F T D P+I QF
Sbjct: 22 VLAPMVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETNFQTCEEDDPMIVQFC 81
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
N+ + V ASK + V G+D+N GCPQ A + YG LLS P+++ I+ L +
Sbjct: 82 GNDPETLVKASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLLSNPDLMERIISTL-SESD 140
Query: 143 NKFSISVKIRLL--NDIKKTVILCQQLEKCGVTFLTSMEEHCTKS---SGPVDINGLKEV 197
K +S KIR+L +D++ T+ L ++LE G + T +GP + LK +
Sbjct: 141 LKCPVSCKIRILDHHDLQPTINLIKRLESAGACMIAVHGRTMTSRGVLTGPANWEALKIL 200
Query: 198 REALSVPMVANGGVKHLND 216
+ S+P +ANGG+ + D
Sbjct: 201 KSRCSIPFIANGGISNYED 219
>UniRef50_Q6P1R4 Cluster: tRNA-dihydrouridine synthase 1-like; n=20;
Euteleostomi|Rep: tRNA-dihydrouridine synthase 1-like -
Homo sapiens (Human)
Length = 473
Score = 115 bits (277), Expect = 8e-25
Identities = 73/201 (36%), Positives = 106/201 (52%), Gaps = 11/201 (5%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTT--DFPVIAQ 80
V APMV S++ +R L R A LC+TPM+ A F +++ R D P+I Q
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQ 79
Query: 81 FAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
F AN+ + FV A+ L Y D +DLN GCPQ A + YG L + +D+++ + +
Sbjct: 80 FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDE----WDLLQRMILL 135
Query: 141 LPNKFSISV--KIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDINGLK 195
K S+ V KIR+ +I KTV Q LEK G LT +E SG +K
Sbjct: 136 AHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIK 195
Query: 196 EVREALSVPMVANGGVKHLND 216
VR+A+++P+ ANG ++ L D
Sbjct: 196 AVRKAVAIPVFANGNIQCLQD 216
>UniRef50_A0EG06 Cluster: Chromosome undetermined scaffold_94, whole
genome shotgun sequence; n=4; Intramacronucleata|Rep:
Chromosome undetermined scaffold_94, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 360
Score = 112 bits (269), Expect = 8e-24
Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 7/198 (3%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTT-DFPVIAQF 81
+CAPMV S++ FR L R + L +TPM L SK+ +EF TT D P+ AQ
Sbjct: 21 ICAPMVDQSELAFRMLTRKYGTTLAYTPM-LHSRIMTESKSYKDEFFTTCPEDRPLFAQL 79
Query: 82 AANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
++ + A+ ++ D +D+N GCPQ A K YG LL K E + IVK L+ +
Sbjct: 80 CGHDPQVLIKAALMIQDQCDAIDINLGCPQGIARKGLYGAYLLEKREQVLTIVKELKQNI 139
Query: 142 PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDINGLKEVR 198
++ KIR+ D K+T+ L + +++ G + LT +E G D + E++
Sbjct: 140 --NVPVTCKIRMFKDRKRTLDLTKDIQEAGCSILTVHGRTKEQNKDFVGQCDWTIIAEIK 197
Query: 199 EALSVPMVANGGVKHLND 216
+ L +P+ ANGG+ +D
Sbjct: 198 QILQIPVFANGGIYTWSD 215
>UniRef50_A2FU21 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 322
Score = 110 bits (265), Expect = 2e-23
Identities = 60/209 (28%), Positives = 114/209 (54%), Gaps = 10/209 (4%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V AP + + FR LVR +N LC+T M+ + + +R + F T + D P+I Q +
Sbjct: 19 VLAPQFEVNDLAFRMLVRKYNVKLCWTGMVNSHMWAIQPSSRNSYFQTCSQDRPLIIQMS 78
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
N+ + + +K + + G+D+NCGC Q A + YG +++ ++++ ++N++
Sbjct: 79 GNDESELIACAKDLQQFAVGIDINCGCTQHIARRGQYGYFMVNNENKRKNVIEMVKNIVA 138
Query: 143 N-KFSISVKIRLLN------DIKKTVILCQQLEKCGVTFLTSMEEHCTKS--SGPVDING 193
+ +S+K RL++ D+ T ++LE GV+ L S+ S +GPVD
Sbjct: 139 SINVPLSIKFRLIDGEDGKPDVDITCKFAKELEDAGVS-LISVHGRAKNSNKAGPVDAEA 197
Query: 194 LKEVREALSVPMVANGGVKHLNDATTYMK 222
++++ E++S+P++ANGGV+ +A K
Sbjct: 198 IRKIAESVSIPVMANGGVRTKEEAIEMFK 226
>UniRef50_UPI000023CFE7 Cluster: hypothetical protein FG01258.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG01258.1 - Gibberella zeae PH-1
Length = 362
Score = 105 bits (252), Expect = 9e-22
Identities = 57/133 (42%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 11 FADAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANE--F 68
F A+ +L APMVRY K+ FR V + DLC++PMILA F ++S AR ++ F
Sbjct: 16 FDIARKQDRFLYALAPMVRYGKLAFRQTVHKYGVDLCWSPMILAKEFNRSSFARDSDWSF 75
Query: 69 MTTTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPE 128
T P I QF AN + AS LV P GVDLNCGCPQ WA + G +L++ E
Sbjct: 76 STEPKQPPTIVQFGANVPLELARASALVAPSSQGVDLNCGCPQSWACAETLGAALMNHRE 135
Query: 129 IIYDIVKGLRNVL 141
++ D+V R L
Sbjct: 136 LVRDMVVETRQRL 148
>UniRef50_Q4UGK9 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 359
Score = 104 bits (249), Expect = 2e-21
Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 11/195 (5%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ APMV S++ FR L R ++ADL +TPM+ A F +N R F T++ D P+IAQF
Sbjct: 29 IVAPMVDQSELPFRLLCRRYSADLAYTPMLHAKIFSENENYRNIHFHTSSDDKPLIAQFC 88
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
N+ F+ AS + V +D+N GCPQ A K YG LL P++ I KG +V
Sbjct: 89 GNDPSAFILASSYIKNDVSAIDINLGCPQGIAKKGRYGSFLLEYPQL---ITKGFASV-D 144
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSS-GPVDINGLKEVREAL 201
KF + + L +V C Q C + TK+ D + +K ++ +
Sbjct: 145 TKFMLFTRGWLF-----SVQSC-QANGCKALTVHGRHRSETKTRISECDWDSIKIIKSRV 198
Query: 202 SVPMVANGGVKHLND 216
++P++ANGG++ D
Sbjct: 199 NIPVIANGGIETFED 213
>UniRef50_P53759 Cluster: tRNA-dihydrouridine synthase 1; n=11;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 423
Score = 103 bits (247), Expect = 4e-21
Identities = 65/209 (31%), Positives = 113/209 (54%), Gaps = 10/209 (4%)
Query: 22 KVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMT---TTTDFPVI 78
++ APMV S++ +R L R + A L +TPM+ A F + K R + + + ++ D P++
Sbjct: 31 RIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDGSSVDRPLV 90
Query: 79 AQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLR 138
QF AN+ + + A+KLV D VDLN GCPQ A K YG L+ + ++I++++ L
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLINTLH 150
Query: 139 NVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDINGLK 195
L K ++ KIR+ +D +K++ + + G FLT + E + +G + +K
Sbjct: 151 KNL--KVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANWETIK 208
Query: 196 EVREALSVPMV--ANGGVKHLNDATTYMK 222
+R+ L V ANG + + D + M+
Sbjct: 209 YLRDNLPKETVFFANGNILYPEDISRCME 237
>UniRef50_UPI0000499E32 Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 339
Score = 101 bits (243), Expect = 1e-20
Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 12/197 (6%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTT--DFPVIAQ 80
+ APMV S + FR LVR +LC+TPM+L+ F + SK NE + + + P+I Q
Sbjct: 25 ILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFVE-SKVYRNEVVNSLDPKEQPIIIQ 83
Query: 81 FAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
++ ++ +K + Y D +D+N GCPQK A K YG L + +D K + N
Sbjct: 84 IVGSDANEMARTAKFLQSYCDAIDINLGCPQKIAQKGNYGAYL----ALDFDHTKEIVNA 139
Query: 141 LPNKFSISV--KIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSG---PVDINGLK 195
+ +I V K+R+ D +KT+ + L++CG+ + T+ N +
Sbjct: 140 VIEAVNIPVYCKVRVFEDEEKTMRFVEMLQECGIWGIAVHGRTITEKQSMNYHARWNYIA 199
Query: 196 EVREALSVPMVANGGVK 212
+++E L +P++ANG ++
Sbjct: 200 KIKERLKIPVIANGEMR 216
>UniRef50_Q9HGN6 Cluster: tRNA dihydrouridine synthase Dus1; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 399
Score = 100 bits (239), Expect = 3e-20
Identities = 65/208 (31%), Positives = 102/208 (49%), Gaps = 9/208 (4%)
Query: 22 KVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTT--DFPVIA 79
++ APMV S++ +R L R ADLC++PM + F ++ R F T T + P+I
Sbjct: 20 RILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTIPEERPLII 79
Query: 80 QFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
QF N+ + + A+K+ PY D VD+N GCPQ A K YG L +I I+ L
Sbjct: 80 QFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESIITKLHT 139
Query: 140 VLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDINGLKE 196
L ++ KIR+ D +KT+ + + K G + L + E +G D ++
Sbjct: 140 EL--SIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIADWEQIQM 197
Query: 197 VREAL--SVPMVANGGVKHLNDATTYMK 222
+R+ L + ANG + H D +K
Sbjct: 198 LRKNLPSETVLFANGNILHAQDIDRCIK 225
>UniRef50_A2EF32 Cluster: Dihydrouridine synthase, putative; n=1;
Trichomonas vaginalis G3|Rep: Dihydrouridine synthase,
putative - Trichomonas vaginalis G3
Length = 318
Score = 99.1 bits (236), Expect = 8e-20
Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 13/212 (6%)
Query: 23 VC-APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQF 81
+C APM S + +R L+RN +C+T M+ A + Q S + F T D P+IAQ
Sbjct: 20 ICLAPMAEISDLSWRMLIRNHGVKVCWTGMLNAHQWSQGSGYQNKFFNTCPEDHPLIAQI 79
Query: 82 AANNRDD--FVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
A +N D V A+K + Y DGVD+N GC QK A + YG ++ + ++ R
Sbjct: 80 AGSNEDQDLIVAAAKDLAKYADGVDVNLGCTQKIASRSEYGYFMVDNCQKREKTLELFRR 139
Query: 140 VLPN-KFSISVKIRLLND------IKKTVILCQQLEKCGVTFLT--SMEEHCTKSSGPVD 190
+ I KIR+ D K T+ ++LE+ GV+ L EH K + V
Sbjct: 140 LCKEVNCPICAKIRIFIDDSGEVSEKITIDFAKKLEEAGVSLLQVHGRAEHRNKQA-DVY 198
Query: 191 INGLKEVREALSVPMVANGGVKHLNDATTYMK 222
+K + +A+++P+VANGG+ + DA +M+
Sbjct: 199 NEIIKHIVQAVNIPVVANGGINTVEDAHKFME 230
>UniRef50_Q8SUV4 Cluster: Putative uncharacterized protein
ECU07_1610; n=1; Encephalitozoon cuniculi|Rep: Putative
uncharacterized protein ECU07_1610 - Encephalitozoon
cuniculi
Length = 341
Score = 99.1 bits (236), Expect = 8e-20
Identities = 64/214 (29%), Positives = 113/214 (52%), Gaps = 9/214 (4%)
Query: 8 MEKFADAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARA-N 66
M KF + +I + Y V APMV S+ +R L + A++ +T M+ DSF + S+ N
Sbjct: 1 MRKFWE-EIQRPYFAV-APMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSRNPVKN 58
Query: 67 EFMTTTT-DFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLS 125
+ TT+ D P++ Q N+ + ++A+ ++ + D +D+N GCPQK A K GYG L
Sbjct: 59 RWYTTSEGDRPLVVQICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQE 118
Query: 126 KPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHC 182
++ +IVK L + L + KIR+ I+KTV + +E+ G + L +
Sbjct: 119 NWKLTGEIVKVLSSGL--NVPVFCKIRVFGSIEKTVEYAKMIEEAGCSLLAVHGRTRDQR 176
Query: 183 TKSSGPVDINGLKEVREALSVPMVANGGVKHLND 216
+ G ++ ++E L +P+++NG + +D
Sbjct: 177 GAAMGFASWKHIRAIKENLRIPVLSNGNIMTHHD 210
>UniRef50_Q8PX79 Cluster: NifR3-like protein; n=5; Archaea|Rep:
NifR3-like protein - Methanosarcina mazei
(Methanosarcina frisia)
Length = 323
Score = 98.3 bits (234), Expect = 1e-19
Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 8/209 (3%)
Query: 10 KFADAKINKTYLK---VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARAN 66
K KI +T L + APM + + FR L R + ADL +T MI D+ S+
Sbjct: 2 KLKKLKIGRTELSGNLLLAPMADVTNLAFRLLCRRYGADLTYTEMINVDALLNESRKSFI 61
Query: 67 EFMTTTTDFPVIAQFAANNRDDFVDASKLVYPYV--DGVDLNCGCPQKWAMKDGYGCSLL 124
+ +++ D P Q D A+ + + +D+N GCP + G G +LL
Sbjct: 62 KGLSSEEDRPFGVQLVGGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALL 121
Query: 125 SKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTK 184
+ PE++Y I+ L L +S KIRLL +KT+ + + +EK G + +T +
Sbjct: 122 NSPELVYSIILELTESLDT--PVSAKIRLLGREEKTLEIARLIEKAGASAVTVHGRTAAQ 179
Query: 185 S-SGPVDINGLKEVREALSVPMVANGGVK 212
SG ++ G++ V+ LS+P++ANG VK
Sbjct: 180 MYSGNSNLEGIRAVKNELSIPVIANGDVK 208
>UniRef50_A2DHB4 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 312
Score = 97.5 bits (232), Expect = 2e-19
Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 10/203 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFP--VIAQFA 82
APM + FR L R LC+T I A + +K R + TT D ++ Q
Sbjct: 18 APMADVNDYSFRKLCRQNGVSLCWTGFINAHHWVTRTKQRDRDVWFTTRDNEKNLVVQLL 77
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
+N ++ V +K V + D ++LNCGC +A + G G L+ + + ++N++
Sbjct: 78 GSNLEELVSCAKDVENFCDMIELNCGCTHCFASRSGCGFFLIDTQKHRDSALILIQNLIK 137
Query: 143 N-KFSISVKIRLLND------IKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGL 194
+ +S+KIRL++D +++TV Q LE+ GV+ +T G VD + +
Sbjct: 138 SINKPVSIKIRLISDDNSVPSLERTVKFAQDLERVGVSLITVHARTQQADKKGDVDYDAI 197
Query: 195 KEVREALSVPMVANGGVKHLNDA 217
K V +A+SVP++ANGG+ L A
Sbjct: 198 KAVVQAVSVPVIANGGISSLEQA 220
>UniRef50_Q00RI1 Cluster: OSIGBa0125M19.5 protein; n=9;
Magnoliophyta|Rep: OSIGBa0125M19.5 protein - Oryza
sativa (Rice)
Length = 319
Score = 95.9 bits (228), Expect = 7e-19
Identities = 68/211 (32%), Positives = 106/211 (50%), Gaps = 19/211 (9%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSF--CQ---NSKARANEFMTTTTDFPV 77
V APMVR + FR L + AD+ + I+ F C+ N +F+ TD V
Sbjct: 8 VLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLERGTDTVV 67
Query: 78 -----------IAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSK 126
+ Q ++ + A++LV V +D+N GCP+ +++ G G +LLSK
Sbjct: 68 FRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGMGAALLSK 127
Query: 127 PEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHC-TKS 185
PE+I+DI+ LR L +++ KIRLLN + TV L +++EK GV L +
Sbjct: 128 PELIHDILTTLRRNLDT--TVTCKIRLLNTRQDTVELARRVEKIGVPALAVHGRKVKDRP 185
Query: 186 SGPVDINGLKEVREALSVPMVANGGVKHLND 216
P + + +V ALS+P++ANG V D
Sbjct: 186 RDPAKWDEIADVVSALSIPVIANGDVFEYED 216
>UniRef50_A6DCX2 Cluster: tRNA-dihydrouridine synthase B; n=1;
Caminibacter mediatlanticus TB-2|Rep:
tRNA-dihydrouridine synthase B - Caminibacter
mediatlanticus TB-2
Length = 311
Score = 95.5 bits (227), Expect = 9e-19
Identities = 57/193 (29%), Positives = 104/193 (53%), Gaps = 9/193 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ Y+ + FR++V+ F D+ F+ MI A++ N++ ++ + P Q AAN
Sbjct: 16 APLAGYTDLPFRSVVKEFGCDMTFSEMINANAIAFNNEKTKKMMQKSSKETPYFIQIAAN 75
Query: 85 NRDDFVDASKLV--YPYVDGVDLNCGCPQKWAMKDGYGCSLL--SKPEIIYDIVKGLRNV 140
N ++ + A +++ P++DG+D+N GCP A + GYG LL E + +IV + +
Sbjct: 76 NVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLKDENKEKLKEIVSAI--I 133
Query: 141 LPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS--SGPVDINGLKEVR 198
+K +S K+RL + V + LE G+ FLT + K G + +K+V
Sbjct: 134 KTSKKIVSAKMRLGYNEVVAVDRAKMLEDLGIKFLT-VHGRTVKQMYKGNANYKEIKKVV 192
Query: 199 EALSVPMVANGGV 211
+ +++P++ANG +
Sbjct: 193 KEVNIPVIANGDI 205
>UniRef50_A4RU69 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 345
Score = 95.5 bits (227), Expect = 9e-19
Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSF--CQ---NSKARANEFMTT--TTDF 75
VCAPMVR S + R L + ADL + ++ F C+ N + + +F+ T F
Sbjct: 16 VCAPMVRISTLATRLLAHEYGADLVYGEELVDKRFMHCRRILNKELGSVDFIDAKGTLTF 75
Query: 76 --------PVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKP 127
V+ Q ++ + +++LV V +D+N GCP+ ++ G G LLS+P
Sbjct: 76 RTVPEERERVVFQVGTSSAASALKSAELVARDVAAIDVNMGCPKHFSTSGGMGARLLSQP 135
Query: 128 EIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVT-FLTSMEEHCTKSS 186
E++ DI+ LR LP+ ++ KIRLL ++T L + +E CGV+ F +
Sbjct: 136 ELVRDILTTLRRNLPSTTHVTCKIRLLESERETAELAKMIESCGVSAFAVHGRYIPQRPR 195
Query: 187 GPVDINGLKEVREALSVPMVANGGVKHLND 216
P N +K V EA+ P++ANG V+ D
Sbjct: 196 EPAHWNLIKNVVEAVDCPVIANGDVECYED 225
>UniRef50_Q4PBU9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 477
Score = 95.1 bits (226), Expect = 1e-18
Identities = 47/120 (39%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 77 VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
++AQFA++ + F DAS+L+ +VDGVDLNCGCPQ WA ++ G LL +PE + D+V+
Sbjct: 169 LVAQFASSKPEPFADASELIGRFVDGVDLNCGCPQPWAYEELLGSYLLRQPETVRDMVRA 228
Query: 137 LRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFL-TSMEEHCTKSSGPVDINGLK 195
++ + + F +SVKIR+ D++ T L + G + L SS PV+++G+K
Sbjct: 229 VKARMGSDFCVSVKIRIDPDLRLTDALVRNALHAGASILQIHGRTRWQSSSEPVNLDGIK 288
Score = 59.3 bits (137), Expect = 7e-08
Identities = 28/50 (56%), Positives = 33/50 (66%)
Query: 21 LKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMT 70
L VCAPMVRYSK+ FRTLV + + TPMILA F + AR +EF T
Sbjct: 41 LNVCAPMVRYSKLAFRTLVSRYETHITTTPMILAKEFSRTEAARNSEFST 90
>UniRef50_Q57V78 Cluster: TRNA-dihydrouridine synthase 1, putative;
n=1; Trypanosoma brucei|Rep: TRNA-dihydrouridine
synthase 1, putative - Trypanosoma brucei
Length = 520
Score = 91.5 bits (217), Expect = 2e-17
Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 33/230 (14%)
Query: 18 KTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTT----- 72
+T + V PMV S++ FR L R + A L +TPM A SF Q++ R F TTT
Sbjct: 71 RTPMYVVGPMVDQSELPFRLLCRRYGATLAYTPMFHAKSFAQSAHYRQRYFSTTTFPPHS 130
Query: 73 ---------------------TDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQ 111
D P+ AQF N+ + + A++ V Y + VD N GCPQ
Sbjct: 131 AMESGGNVAANDSTSNDGALDNDHPLFAQFCGNDPETVLAAARHVEDYCEAVDFNIGCPQ 190
Query: 112 KWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCG 171
A + YG L+ E++++I+ L L + ++ K+R+ +D T+ + L G
Sbjct: 191 GIARRGHYGSFLMEDWELLHNILHALAVEL--RVPVTAKMRIFDDEALTLKYAEMLRDTG 248
Query: 172 VTFLT---SMEEHCTKSSGPVDINGLKEVREAL--SVPMVANGGVKHLND 216
+ L E+ + P D+ ++ V E L S+P++ANG V D
Sbjct: 249 IYVLCVHGRTRENKGQQQQPADLRMIRRVHEHLRGSIPIIANGNVLTFED 298
>UniRef50_UPI000023EA9A Cluster: hypothetical protein FG07217.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG07217.1 - Gibberella zeae PH-1
Length = 510
Score = 89.8 bits (213), Expect = 5e-17
Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 21/173 (12%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNAD------LCFTPMILADSFCQNSKARANEFMTTTTDF- 75
+ APMV S+ +R L R+F + L +TPM+ A F Q+ K R F TD
Sbjct: 31 IVAPMVDQSEFAWRMLTRSFISPTEQKSLLAYTPMLHARLFSQDDKYRKAHFQAVKTDGE 90
Query: 76 ------------PVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSL 123
P+ QF AN+ D + A+K V PY D VDLN GCPQ A K YG L
Sbjct: 91 TPWLDGNPSIDRPLFVQFCANDPDALLSAAKQVAPYCDAVDLNLGCPQGIARKGKYGAFL 150
Query: 124 LSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT 176
++I+ ++ L LP ++ KIR+L+ ++T+ Q + K G + LT
Sbjct: 151 QEDQDLIFRLINILHKELP--VPVTAKIRILDTKEETLAYAQNVLKAGASILT 201
>UniRef50_A6RW05 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 278
Score = 89.0 bits (211), Expect = 8e-17
Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 6/153 (3%)
Query: 66 NEFMTTTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLS 125
++F T+ T P IAQF + + ++ L+ PYV+GVD+NCGCPQ WA G +L+
Sbjct: 26 DDFTTSPTSGPTIAQFGVCSPLEISRSTTLLAPYVNGVDINCGCPQSWACACSIGAALMH 85
Query: 126 KPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTK 184
K E++ ++VK ++ L K +++T+ ++ GV F+T T
Sbjct: 86 KRELVAEMVKEAKSALKRDGFEGKK-----TVRETIDFINTVQDAGVDFITIHGRMRSTP 140
Query: 185 SSGPVDINGLKEVREALSVPMVANGGVKHLNDA 217
SS PV++ +K + +VP ++NG + L+DA
Sbjct: 141 SSHPVNLEAIKLLTTHTTVPTLSNGDIFTLSDA 173
>UniRef50_Q6F288 Cluster: TRNA dihydrouridine synthetase; n=3;
Mollicutes|Rep: TRNA dihydrouridine synthetase -
Mesoplasma florum (Acholeplasma florum)
Length = 325
Score = 88.6 bits (210), Expect = 1e-16
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 4/193 (2%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V PM S FR + + ADL M+ + N+K + + P+ Q
Sbjct: 13 VQGPMAGVSNPPFRLISKEKGADLVCAEMVSVEGMTHNNKKTFSMLAVEKKEHPMSMQIF 72
Query: 83 ANNRDDFVDASKLVYPYVDG--VDLNCGCPQ-KWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
N+ + F+ A+K + VD +DLN GCP K A++ G SLL PE+IYDIVK +
Sbjct: 73 GNDVESFIVATKWIDENVDCDIIDLNIGCPAPKVAVRSASGSSLLKTPELIYDIVKAVVE 132
Query: 140 VLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTK-SSGPVDINGLKEVR 198
+ +++ + V + + +EK G + +T ++ SG D +KEV+
Sbjct: 133 NTSKPVTAKIRLGWDKESVNAVEVSKLIEKAGASGITVHGRTRSEFYSGHADWEKIKEVK 192
Query: 199 EALSVPMVANGGV 211
EA+++P++ NG V
Sbjct: 193 EAVNIPVIGNGDV 205
>UniRef50_A2EN54 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 321
Score = 88.6 bits (210), Expect = 1e-16
Identities = 57/210 (27%), Positives = 106/210 (50%), Gaps = 11/210 (5%)
Query: 23 VC-APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQF 81
VC APMV + FR L D+C+T MI + ++ R + + D P++ Q
Sbjct: 15 VCLAPMVEMGDIAFRILCHRHGCDVCWTGMINGSQWNRSKTYRQQQIEYSEEDRPLVIQI 74
Query: 82 AANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
+ + D + +K + + +D+N GC QK A + YG ++ + ++V ++++
Sbjct: 75 SGSIDVDLLTTAKSMSEFGVPIDINLGCCQKVAKRGEYGYFMVDSEQKRQNVVNLIKSI- 133
Query: 142 PNKFSIS--VKIRLLND------IKKTVILCQQLEKCGVTFLTSMEEHCTKSS-GPVDIN 192
P++ ++ VKIR L D I TV + LE+ G + +T + GP++
Sbjct: 134 PSEITVPLYVKIRALTDESGIPSIPITVDFAKHLEEAGASLITIHGRSAAQDKHGPLNKE 193
Query: 193 GLKEVREALSVPMVANGGVKHLNDATTYMK 222
+K V +A+S+P++ NGG+ L+DA ++
Sbjct: 194 LVKAVVQAVSIPVIVNGGINSLDDARNMIR 223
>UniRef50_Q4PG83 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 527
Score = 87.8 bits (208), Expect = 2e-16
Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 40/230 (17%)
Query: 22 KVCAPMVRYSKVHFRTLVRNFNADLCFTPMI----LADSFCQNSKARANEF--------- 68
+V APMV S++ +R L R + +DL +TPMI AD + K + E
Sbjct: 51 RVVAPMVDQSELAWRILSRRYGSDLVYTPMINAKLFADENSKKKKVKYQEVNFNREHAEE 110
Query: 69 ----------------MTTTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQK 112
+ TD P+ QF +N+ + + A+K+V D VDLN GCPQ
Sbjct: 111 GASSPIASLLSNEGEGSSKDTDRPLFVQFCSNDPETLLKAAKVVEDRCDAVDLNLGCPQH 170
Query: 113 WAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGV 172
A + YG L+ +I+ ++ L L K ++ K+R+ ++KT+ + LE+ G
Sbjct: 171 IARRGHYGSYLMEDWSLIFSLINILHVNL--KVPVTAKMRVYESVEKTITYARLLERAGA 228
Query: 173 TFLT------SMEEHCTKSSGPVDINGLKEVREALSVPMVANGGVKHLND 216
+T +M+ H T G D ++ V+EA++VP+ ANG V + D
Sbjct: 229 QIITVHGRTRNMKGHLT---GLADWAKIRAVKEAVNVPVFANGNVLYPQD 275
>UniRef50_A2F0D1 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 333
Score = 85.0 bits (201), Expect = 1e-15
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 23/216 (10%)
Query: 26 PMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFP--------- 76
PMVR S + FR + AD + P DS + + T +P
Sbjct: 17 PMVRASNLPFRLMCLENGADGVYGPATSVDSILASHYDENEDPYTMYFGWPKNPHVHFHT 76
Query: 77 -------VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEI 129
+I Q N+ V A+ +V + D +DLNCGCP+ +A G G SL+S+PEI
Sbjct: 77 DPKEKGKLIFQILTNDASKAVQAASVVVKFADAIDLNCGCPESFATSRGTGSSLMSEPEI 136
Query: 130 IYDIVKGLRNVLPNKFSISVKIRLLNDIKKTV---ILCQQLEKCGVTFLTSMEEHCTKSS 186
+ D+V LR ISVK R+ ++I++++ + C+ + ++E K+
Sbjct: 137 VADVVSALRR--NYNVPISVKHRIHHNIEESIQFAVACENAGASAIAVHGRLKEQ--KNK 192
Query: 187 GPVDINGLKEVREALSVPMVANGGVKHLNDATTYMK 222
G V + +K V + L V + NGGVK+ A M+
Sbjct: 193 GSVAYDNMKLVFDHLHVAKIGNGGVKNREMAKEMME 228
>UniRef50_A4M5I1 Cluster: Dihydrouridine synthase, DuS; n=1;
Petrotoga mobilis SJ95|Rep: Dihydrouridine synthase, DuS
- Petrotoga mobilis SJ95
Length = 301
Score = 84.2 bits (199), Expect = 2e-15
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 4/198 (2%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM Y+ FR + R F A FT MI DS + ++ + + + + + Q N
Sbjct: 9 APMADYTDYPFREICRRFGAKFTFTEMISVDSIIRENE-KVEKMLPQKGEDNIGVQLFGN 67
Query: 85 NRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNK 144
F++A+K + +D+N CP +K G G +LL P+++ DIV L+ +
Sbjct: 68 ETTKFIEAAKSIQHLASWIDINAACPVNKVVKKGSGAALLKNPKLLGDIVFNLKKSI--D 125
Query: 145 FSISVKIRLLNDIKKTVILCQQLEKCGVTF-LTSMEEHCTKSSGPVDINGLKEVREALSV 203
+ VK+RL D + + +EK G + + SG + LK+++ +++
Sbjct: 126 LPVGVKVRLGYDQINIEEVAETVEKAGADYIIVHGRTRSQMYSGIANREILKKLKAKITI 185
Query: 204 PMVANGGVKHLNDATTYM 221
P+ A+G V D Y+
Sbjct: 186 PLGASGDVFSKKDIDDYL 203
>UniRef50_Q5KP54 Cluster: TRNA dihydrouridine synthase, putative;
n=1; Filobasidiella neoformans|Rep: TRNA dihydrouridine
synthase, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 610
Score = 84.2 bits (199), Expect = 2e-15
Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 5/152 (3%)
Query: 74 DFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDI 133
D P+I QF AN+ D + A+K V D VD+N GCPQ A + YG L + E+I+ +
Sbjct: 149 DRPLIVQFCANDPDILLAAAKKVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKL 208
Query: 134 VKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVD 190
+ L L ++ K R+ D+ KT+ + +E G LT E +++G D
Sbjct: 209 ISTLHENL--SVPVTAKFRIFPDLDKTIAYARMMEAAGAQILTCHGRTREMKGQNTGLAD 266
Query: 191 INGLKEVREALSVPMVANGGVKHLNDATTYMK 222
++EV++A+ VP+ ANG + + D M+
Sbjct: 267 WEYIREVKKAVKVPVFANGNILYREDVDRCME 298
>UniRef50_Q9XWJ9 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 436
Score = 82.6 bits (195), Expect = 7e-15
Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 20/205 (9%)
Query: 22 KVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTT-----DFP 76
K+ APMVR + R L + ADLC+T I+ + ++ NE + T D
Sbjct: 9 KILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRV-VNEALGTIDYRNGDDII 67
Query: 77 V----------IAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSK 126
+ I Q N+ + +++V V G+D+N GCP+ +++ G G +LL++
Sbjct: 68 LRLAPEEKGRCILQIGTNSGEKAAKIAQIVGDDVAGIDVNMGCPKPFSIHCGMGAALLTQ 127
Query: 127 PEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFL-TSMEEHCTKS 185
E I DI+ L++ K ++ KIR+L+D + T+ L Q++EKC V+ L +
Sbjct: 128 TEKIVDILTSLKSAA--KVPVTCKIRVLDDPEDTLKLVQEIEKCRVSALGVHGRRRDERQ 185
Query: 186 SGPVDINGLKEVREAL-SVPMVANG 209
I+ +++V +A+ S+P+++NG
Sbjct: 186 PDKCRIDEIRDVAQAVQSIPVISNG 210
>UniRef50_A2ACC0 Cluster: Novel protein; n=17; Eumetazoa|Rep: Novel
protein - Mus musculus (Mouse)
Length = 194
Score = 82.2 bits (194), Expect = 9e-15
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V APMV S++ +R L R A LC+TPM+ A F +++ R +
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKEN---------LYCDVC 70
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
+R V A+ L Y D +DLN GCPQ A + YG L + +D+++ + +
Sbjct: 71 PEDRPLIVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEE----WDLLQRMILLAH 126
Query: 143 NKFSISV--KIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDINGLKEV 197
+ S+ V KIR+ +I KTV Q LEK G LT +E +G +K V
Sbjct: 127 ERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAV 186
Query: 198 REALSVPM 205
R+A+ +P+
Sbjct: 187 RKAVGIPV 194
>UniRef50_Q4D174 Cluster: Dihydrouridine synthase (Dus), putative;
n=2; Trypanosoma cruzi|Rep: Dihydrouridine synthase
(Dus), putative - Trypanosoma cruzi
Length = 548
Score = 81.8 bits (193), Expect = 1e-14
Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 33/230 (14%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEF----------MTTT 72
V PMV S++ FR L R + A L ++PM+ A SF Q+++ RA F MT T
Sbjct: 99 VVGPMVDQSELPFRMLCRRYGATLAYSPMLHARSFAQSAQYRARYFSTTPHRAELAMTAT 158
Query: 73 -------------------TDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKW 113
TD P+ QF N+ D + A++ V + VD+N GCPQ
Sbjct: 159 ASGEGEAAEDAGRTSDGEETDHPLFVQFCGNDADTLLAAARHVEDDCEAVDVNLGCPQGI 218
Query: 114 AMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVT 173
A + YG L+ + +++I+ L L + ++ K+R+ +D T+ + L G+
Sbjct: 219 ARRGHYGSFLMEDWDRVHNILHCLAVEL--RVPVTAKMRVFDDDALTLKYAEMLRDTGIA 276
Query: 174 FLTSMEEHCTKSSGPVDINGLKEVREAL--SVPMVANGGVKHLNDATTYM 221
L G D+ ++ VRE L S+P++ NG V D M
Sbjct: 277 VLCVHGRTRHNKRGIADMEKIRRVREHLRGSIPVIGNGNVLTFEDVRRNM 326
>UniRef50_Q7SGX4 Cluster: Putative uncharacterized protein
NCU03195.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU03195.1 - Neurospora crassa
Length = 341
Score = 81.4 bits (192), Expect = 2e-14
Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 24/191 (12%)
Query: 49 TPMILADSFCQNSKARANEFMTTTT--DFPVIAQFAANNRDDFVDASKLVYPYVDGVDLN 106
TP QN AR ++ +T P + QF AN+ + AS LV PY GVDLN
Sbjct: 4 TPERSNQDIVQNRFARDSDLTISTNGPQPPTVVQFGANDPQELARASTLVAPYAGGVDLN 63
Query: 107 CGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL---------------PNKFSISVKI 151
CGCPQ WA + G +L+ K E++ D+V R L P S+SVKI
Sbjct: 64 CGCPQSWACAETLGAALMEKRELVRDMVIETREYLRRDGWGVGKERDVDNPKGRSVSVKI 123
Query: 152 RLLNDIKKTVILCQQL----EKCGVTFLT-SMEEHCTKSSGPVDINGLKEVREAL--SVP 204
R+ D++KT+ + + + +LT T SS P+++ L+ + VP
Sbjct: 124 RVHKDLRKTMDFITTVLGPSQDRHIDWLTIHPRTRQTPSSTPINVEALEILTSTFGDKVP 183
Query: 205 MVANGGVKHLN 215
++ +G V LN
Sbjct: 184 ILLSGDVFTLN 194
>UniRef50_Q6AJZ5 Cluster: TRNA-dihydrouridine synthase; n=1;
Desulfotalea psychrophila|Rep: TRNA-dihydrouridine
synthase - Desulfotalea psychrophila
Length = 328
Score = 80.2 bits (189), Expect = 4e-14
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 10/205 (4%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V AP+ Y+ + FR L F AD + MI N + + + PV Q
Sbjct: 14 VLAPLAGYTDLSFRLLCHQFGADYTVSEMISCHGLFYNQQRTLEMLASLPEERPVSFQLF 73
Query: 83 ANNRDDFVDASKLVYPYV-DGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
D A+ ++ + D +D+N GCP + K G G +L+S PE+ YD++ R+V+
Sbjct: 74 GAEPDIMAKATLILNDFQPDMIDINMGCPVRKVTKKGAGAALMSTPELAYDVI---RSVV 130
Query: 142 PNKFSISVKIRLLNDIKKT----VILCQQLEKCGVTFL-TSMEEHCTKSSGPVDINGLKE 196
N I V ++ + T V E+ G + SG D +KE
Sbjct: 131 DNT-DIPVTVKFRAGVSSTELNGVEFGLMTERAGAAAVAVHGRTRAQAFSGVADRGIIKE 189
Query: 197 VREALSVPMVANGGVKHLNDATTYM 221
V+EALS+P++ NG + D M
Sbjct: 190 VKEALSIPVIGNGDILSYQDGLDMM 214
>UniRef50_Q4WRF0 Cluster: Dihydrouridine synthase family protein,
putative; n=9; Pezizomycotina|Rep: Dihydrouridine
synthase family protein, putative - Aspergillus
fumigatus (Sartorya fumigata)
Length = 541
Score = 79.4 bits (187), Expect = 7e-14
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 74 DFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDI 133
D P+I QF AN+ DDF++A++ V PY D VDLN GCPQ A K YG L ++IY +
Sbjct: 124 DRPLIVQFCANDPDDFLEAARHVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKL 183
Query: 134 VKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVD 190
+ L LP ++ K R+ +KT+ + + G + +T E ++G D
Sbjct: 184 INRLHKELP--IPVTAKFRIQESKEKTLEYAKMILSAGASIITLHGRTREQKGHNTGLAD 241
Query: 191 INGLKEVREALSVPMVANGGVKHLN 215
+ ++ +R+ L V +LN
Sbjct: 242 WSYIRYLRDNLPPETVIFANGNNLN 266
>UniRef50_Q9NX74 Cluster: tRNA-dihydrouridine synthase 2-like; n=27;
Eumetazoa|Rep: tRNA-dihydrouridine synthase 2-like -
Homo sapiens (Human)
Length = 493
Score = 79.0 bits (186), Expect = 9e-14
Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 22/206 (10%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFP------ 76
+ APMVR + R L ++ AD+ + ++ Q K NE ++T DF
Sbjct: 15 ILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQ-CKRVVNEVLSTV-DFVAPDDRV 72
Query: 77 -----------VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLS 125
V+ Q ++ + + ++LV V G+D+N GCP++++ K G G +LLS
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLS 132
Query: 126 KPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFL-TSMEEHCTK 184
P+ I I+ L V + ++ KIR+L ++ T+ L +++E+ G+ + + +
Sbjct: 133 DPDKIEKILSTL--VKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREER 190
Query: 185 SSGPVDINGLKEVREALSVPMVANGG 210
PV +K + + LS+P++ANGG
Sbjct: 191 PQHPVSCEVIKAIADTLSIPVIANGG 216
>UniRef50_A2FJB5 Cluster: TIM-barrel protein, nifR3 family protein;
n=1; Trichomonas vaginalis G3|Rep: TIM-barrel protein,
nifR3 family protein - Trichomonas vaginalis G3
Length = 301
Score = 78.6 bits (185), Expect = 1e-13
Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 10/196 (5%)
Query: 27 MVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAANNR 86
M Y+ + FR + AD+ T M+ A + +K + + + V Q ++
Sbjct: 1 MAGYTDIAFREVATEKGADITVTEMVSAMALVYENKKTIDLLDISPKEKKVAVQIFGSDP 60
Query: 87 DDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKF 145
D +A++++ Y VD+N GCP +K+ G LLS P ++YDIVK + V +
Sbjct: 61 DVMGEAARILNDYDFSYVDINMGCPAPKIVKNNSGSHLLSNPSLVYDIVKSV--VKNSNK 118
Query: 146 SISVKIRLLNDIKKTVILCQQLEKCGVTFLT----SMEEHCTKSSGPVDINGLKEVREAL 201
++ K+R ++ + +E G +F+T + EE+ T G D + +KEV+E +
Sbjct: 119 PVTAKVRKGIGGVSSMKAIKNIEAAGASFVTVHGRTREEYYT---GKADWDFIKEVKENV 175
Query: 202 SVPMVANGGVKHLNDA 217
+P++ NG V DA
Sbjct: 176 KIPVIGNGDVDSPEDA 191
>UniRef50_Q54QJ2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 402
Score = 78.2 bits (184), Expect = 2e-13
Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 24/210 (11%)
Query: 22 KVCAPMVRYSKVHFRTLVRNFNADLCFTP-----MILADSFCQNSKARANEFM------- 69
K+ APMVR R L N+ D+ ++ ++ + N K + +F+
Sbjct: 34 KIMAPMVRVGTYPMRILAYNYGCDIAYSEELIDLKLMKSTRVVNEKLKTIDFIAKDQTLC 93
Query: 70 --TTTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKP 127
T+ D + Q + ++A+K+V + +D+N GCP+ ++++ G G +LLSKP
Sbjct: 94 YRTSEKDVRNVLQLGTASSMTALEAAKVVCNDICALDINMGCPKFFSVQGGMGSALLSKP 153
Query: 128 EIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHC----T 183
E I DI+ L+ L N I+ KIRLL+ ++T+ L + +E GV +++ HC
Sbjct: 154 ETIKDILTTLKRNL-NGIPITCKIRLLSTDQETIDLLRIIESTGV---SAIGVHCRMIPE 209
Query: 184 KSSGPVDINGLKEV--REALSVPMVANGGV 211
+ P + L+ + + SVP++ANG +
Sbjct: 210 RPRDPAHWDRLENILSNASFSVPIIANGDI 239
>UniRef50_Q5KGP0 Cluster: Putative uncharacterized protein; n=3;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 496
Score = 77.8 bits (183), Expect = 2e-13
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 26/218 (11%)
Query: 13 DAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSF--CQNS--------- 61
D +IN V APMVR + R L + A L ++P ++ + + S
Sbjct: 101 DNEINYKNKLVLAPMVRTGSLPMRLLSLYYGAGLVWSPEVVDRAIIGAERSVDPVTGVIT 160
Query: 62 --KARANEFMTTTTDFP-VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDG 118
K + F T + P +I Q ++N + V A++ V V G+DLNCGCP+ ++ G
Sbjct: 161 YHKGQGPIFSTHPAEKPFLIFQIGSSNPELAVKAAQTVQQDVAGIDLNCGCPKPFSTHAG 220
Query: 119 YGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSM 178
G +LLS PE++ DI++ L + +P IS KIRLL T+ L ++ + GV LT
Sbjct: 221 MGAALLSTPELLLDILRALLDSIP--LPISCKIRLLPTQPSTLYLASRILRTGVRNLT-- 276
Query: 179 EEHC-TKSSGPVD------INGLKEVREALSVPMVANG 209
HC T+ P + ++ + E+ + + ++ NG
Sbjct: 277 -VHCRTRQMRPGERALWERLSSIVELGKRRGISVICNG 313
>UniRef50_UPI00015B40A4 Cluster: PREDICTED: similar to
tRNA-dihydrouridine synthase; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to
tRNA-dihydrouridine synthase - Nasonia vitripennis
Length = 505
Score = 77.0 bits (181), Expect = 3e-13
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 21/218 (9%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTT-----TDFPV 77
+ APMVR + R L + AD+ +T ++ D S R NE + T TD +
Sbjct: 60 IMAPMVRIGTLPMRLLALEYGADIVYTEELI-DWKLLRSVRRVNEVLGTVDYIDRTDGTI 118
Query: 78 IAQFAANNRDDFV------DAS------KLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLS 125
+ + + RD V DA+ KLV V G+D+N GCP+++++ G G +LL
Sbjct: 119 VFRTSPIERDRVVLQLGTCDANRALKVAKLVEQDVAGIDVNMGCPKRFSILGGMGAALLK 178
Query: 126 KPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHC-TK 184
+PE +I++ L L ++ KIR+L +++ T+ L L G++ +T +
Sbjct: 179 QPEKASEILRTLVGGL--SIPVTCKIRVLGNVEDTLKLVDTLVDTGISAITVHGRTVDER 236
Query: 185 SSGPVDINGLKEVREALSVPMVANGGVKHLNDATTYMK 222
P +K V E +P++ANGG K + K
Sbjct: 237 PQHPNRSEFIKRVAEHAKIPVIANGGSKEIEKRADIFK 274
>UniRef50_Q7RX85 Cluster: Putative uncharacterized protein
NCU00065.1; n=3; Pezizomycotina|Rep: Putative
uncharacterized protein NCU00065.1 - Neurospora crassa
Length = 629
Score = 77.0 bits (181), Expect = 3e-13
Identities = 70/224 (31%), Positives = 101/224 (45%), Gaps = 37/224 (16%)
Query: 23 VCAPMVRYSKVHFRTLVRNF-NAD-----LCFTPMILADSFCQNSKARANEFMTT----T 72
+ APMV S+ +R L R+F AD LC+TPM A F + K R + F T
Sbjct: 53 IVAPMVDQSEFAWRMLTRSFLPADEQHKLLCYTPMFHARLFTEAPKYRDSHFQPIRGPLT 112
Query: 73 TDFP--------------------VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQK 112
D P + QF AN+ + A+KLV PY D VDLN GCPQ
Sbjct: 113 ADSPRPDSSDYVPFLDGNPEFDRSLFVQFCANDPAYLLSAAKLVAPYCDAVDLNLGCPQG 172
Query: 113 WAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGV 172
A + YG L E+I++++ L L ++ KIR+L+ + T+ Q + + G
Sbjct: 173 IAKRGQYGSFLQENQELIFELINTLHKEL--DIPVTAKIRILDTKEATLKYAQNVLRAGA 230
Query: 173 TFLT---SMEEHCTKSSGPVDINGLKEVREALSVPMV--ANGGV 211
+ LT E +G D ++ +RE L V ANG +
Sbjct: 231 SILTVHGRRREQKGHQTGLADWEYIRYLRENLPKETVIFANGNI 274
>UniRef50_Q59YG4 Cluster: Potential tRNA dihydrouridine synthase;
n=2; Saccharomycetales|Rep: Potential tRNA
dihydrouridine synthase - Candida albicans (Yeast)
Length = 433
Score = 76.2 bits (179), Expect = 6e-13
Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 24/179 (13%)
Query: 22 KVC-APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTT--------- 71
K+C APMVR ++ R L + DL +TP ++ Q+++ E T
Sbjct: 7 KLCLAPMVRSGELPIRLLSLRYGCDLLWTPELVDKKILQSTRIINQELNTIDYIVSNHQQ 66
Query: 72 ----TTDF---PV-----IAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGY 119
T F PV I Q +++ VDA++ V VDG+DLNCGCP+ ++ G
Sbjct: 67 SDKKTVIFRKHPVETGRLILQLGSSDPQLAVDAARKVIDDVDGIDLNCGCPKNFSTHSGM 126
Query: 120 GCSLLSKPEIIYDIVKGL--RNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT 176
G LL P+ + I+ L + +PNK SIS KIRL N+ ++ L +++ + G++ LT
Sbjct: 127 GAELLKTPDKLCSILINLVEKIGIPNKKSISCKIRLFNNYDQSKNLIEKILQTGISNLT 185
>UniRef50_Q1NXZ7 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3 precursor; n=2; delta proteobacterium MLMS-1|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3
precursor - delta proteobacterium MLMS-1
Length = 313
Score = 75.4 bits (177), Expect = 1e-12
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 5/203 (2%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V AP+ YS + FR L R + A LC++ M+ + A TT + P++ Q
Sbjct: 16 VAAPLAGYSDLPFRLLCREYGAGLCYSEMLSCHGLVRRQPATIEMLATTAAERPLLMQLF 75
Query: 83 ANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
+ +A+ ++ +DG+D+N GCP + +K G G +L+ PE+ I G
Sbjct: 76 GAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGAGAALMRDPELAAAIT-GAVTAA 134
Query: 142 PNKFSISVKIRLLNDIKK--TVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVR 198
++VKIR + K+ + L G +T + +G D + V+
Sbjct: 135 AGDLPVTVKIRSGWNHKQINAPDFARLLVAHGAAAVTIHARTWSDGFTGRADWAVIAAVK 194
Query: 199 EALSVPMVANGGVKHLNDATTYM 221
A+SVP++ NG + A M
Sbjct: 195 RAVSVPVIGNGDIGSYEQALAMM 217
>UniRef50_Q8RFK3 Cluster: Nitrogen regulation protein NIFR3; n=3;
Fusobacterium nucleatum|Rep: Nitrogen regulation protein
NIFR3 - Fusobacterium nucleatum subsp. nucleatum
Length = 307
Score = 74.5 bits (175), Expect = 2e-12
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 5/196 (2%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ + FR ++ +F DL FT M+ ++ + ++ + V Q
Sbjct: 7 APIAGVTDYTFRGILEDFKPDLIFTEMVSVNALSVLNDKTISKILKLREGNAV--QIFGE 64
Query: 85 NRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
+ + + K + V ++LNCGCP K + GYG +L+ +PE I I+ +++VL N
Sbjct: 65 DIEKIKASVKYIENLGVKHINLNCGCPMKKIVNCGYGAALVKEPEKIKKILSEIKSVLNN 124
Query: 144 KFSISVKIRL-LNDIKKTVILCQQLEKCGVTFLTSMEEHCTK-SSGPVDINGLKEVREAL 201
+SVKIR+ + + + + + E+ G +T + SG D +KEV++ +
Sbjct: 125 DTKLSVKIRIGYKEPENYIQIGKIAEELGCDHITVHGRTREQLYSGKADWKYIKEVKDNI 184
Query: 202 SVPMVANGGVKHLNDA 217
S+P++ NG + DA
Sbjct: 185 SIPVIGNGDIFTGEDA 200
>UniRef50_Q2H6D9 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 464
Score = 74.5 bits (175), Expect = 2e-12
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 21/175 (12%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNAD------LCFTPMILADSFCQNSKARANEFMTTTTDF- 75
+ APMV S+ +R L R+F + L ++PM A F ++ K R F T D
Sbjct: 39 IVAPMVDQSEFAWRMLSRSFLPESEQSGLLAYSPMFHARLFSESQKYRDQHFQPTKPDCD 98
Query: 76 ------------PVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSL 123
P QF AN+ ++A+K+ PY D VDLN GCPQ A K YG L
Sbjct: 99 KLYLDGNPAIDRPFFVQFCANDPQALLNAAKIAAPYCDAVDLNLGCPQGIAKKGHYGSFL 158
Query: 124 LSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSM 178
++I+ ++K L L ++ KIR+L + T+ Q + + + LT +
Sbjct: 159 QEDQDLIHQLIKILHENL--DIPVTAKIRILETKEATLKYAQNVLRPTASILTCL 211
>UniRef50_Q8KB61 Cluster: TIM-barrel protein, nifR3 family; n=10;
Chlorobiaceae|Rep: TIM-barrel protein, nifR3 family -
Chlorobium tepidum
Length = 352
Score = 73.7 bits (173), Expect = 3e-12
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 2/197 (1%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ APM + FR L + AD+ +T I A++ + + + + PV Q
Sbjct: 18 ILAPMEDVTDRAFRQLCKQHGADIVYTEFISAEALRRGVEKSIRKITVADHERPVAVQIF 77
Query: 83 ANNRDDFVDASKLVYPYV-DGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
N + V+A+ + Y D +D+N GCP K G G +LL +PE + +I + N +
Sbjct: 78 GNTVESMVEAAAIAETYEPDYLDINFGCPVKKVAGRGAGAALLKEPEKLSEIASAVVNAV 137
Query: 142 PNKFSISVKIRLLNDIKKTVILCQQLEKCGV-TFLTSMEEHCTKSSGPVDINGLKEVREA 200
+ +I +D ++LE G+ G D + E ++A
Sbjct: 138 SLPVTAKTRIGWDHDSINITDTVRRLEDAGIRAVAVHGRTRSDMYKGRADWGRIAEAKQA 197
Query: 201 LSVPMVANGGVKHLNDA 217
S+P++ANG V DA
Sbjct: 198 CSIPVIANGDVWLPEDA 214
>UniRef50_Q9VY45 Cluster: CG1434-PA; n=6; Endopterygota|Rep:
CG1434-PA - Drosophila melanogaster (Fruit fly)
Length = 473
Score = 73.3 bits (172), Expect = 4e-12
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 21/211 (9%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTT-----TDFPV 77
+ APMVR + R L AD+ +T L D S R N + T +D +
Sbjct: 27 ILAPMVRVGTLPMRLLALEMGADIVYTEE-LVDIKLIKSIRRPNPALGTVDFVDPSDGTI 85
Query: 78 IAQFAANNRDDFV------DAS------KLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLS 125
+ + A V DA KL+ + G+D+N GCP+++++K G G +LL+
Sbjct: 86 VFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGMGAALLA 145
Query: 126 KPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFL-TSMEEHCTK 184
P+ I++ L + L ++ KIR+L D++ T+ L Q+L G+ + +
Sbjct: 146 DPDKAAHILRTLCSGL--DIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIHARTRDER 203
Query: 185 SSGPVDINGLKEVREALSVPMVANGGVKHLN 215
P L+ V +A+ +P++ANGG K+++
Sbjct: 204 PQHPAHPEVLRAVAQAVDIPIIANGGSKNMH 234
>UniRef50_Q4S086 Cluster: Chromosome undetermined SCAF14784, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14784,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 505
Score = 72.9 bits (171), Expect = 6e-12
Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 27 MVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTT--DFPVIAQFAAN 84
MV S++ +R L R A LC+TPM A F +++ R + D P+I QF AN
Sbjct: 1 MVDQSELAWRLLSRRHGAQLCYTPMFHAQVFVRDANYRRDNLYNEVCEEDRPLITQFCAN 60
Query: 85 NRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSL 123
+ + FV A+ L Y D +DLN GCPQ A + YG L
Sbjct: 61 DPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFL 99
Score = 52.8 bits (121), Expect = 6e-06
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 147 ISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDINGLKEVREALSV 203
I+ KIR+ +++KTV Q LEK G LT +E +G ++ VR+A+++
Sbjct: 157 ITCKIRVFKEMEKTVRYAQMLEKAGCQLLTVHGRTKEQKGAMTGVASWEHIRAVRQAVNI 216
Query: 204 PMVANGGVKHLNDAT 218
P+ ANG ++HL+D T
Sbjct: 217 PVFANGNIQHLSDVT 231
>UniRef50_Q6C002 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 394
Score = 72.5 bits (170), Expect = 7e-12
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 60 NSKARANEFMTTTTDFP-VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDG 118
N++ +A F T+ + +I Q + N + V A K+V V G+DLNCGCP+ ++M G
Sbjct: 68 NTEKKAIIFRTSEAERDKIIFQVGSANPEIAVAACKMVAKDVAGIDLNCGCPKHFSMHAG 127
Query: 119 YGCSLLSKPEIIYDIVKGLRNVL--PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT 176
G +LL P+ + I++ L + P SISVKIRLL +KT+ L +L + GV LT
Sbjct: 128 MGAALLKTPDKLVAILEALVKEVGEPFNVSISVKIRLLETEEKTLELVDRLAQTGVKNLT 187
>UniRef50_O74731 Cluster: tRNA dihydrouridine synthase Dus2; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus2 - Schizosaccharomyces pombe (Fission
yeast)
Length = 479
Score = 72.5 bits (170), Expect = 7e-12
Identities = 69/224 (30%), Positives = 107/224 (47%), Gaps = 32/224 (14%)
Query: 22 KVC-APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQ--------NSKARANEFMTTT 72
KVC APMVR ++ R L + A+L + P I+ + N + +F+
Sbjct: 9 KVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCIDFVKPP 68
Query: 73 TD---FPV--------IAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGC 121
++ F V I Q + + + V+A+KLV V G+DLNCGCP+ +++ G G
Sbjct: 69 SNKVLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVHAGMGA 128
Query: 122 SLLSKPEIIYDIVKGLRNVL--PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSME 179
LL + + I+ L N + P K SIS KIRLL + T+ L +++ GV +T
Sbjct: 129 GLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRAIT--- 185
Query: 180 EHC----TKSSGPVDINGLKE---VREALSVPMVANGGVKHLND 216
HC +++ P D + L E V V ++ NG V ND
Sbjct: 186 VHCRTTPMRNTEPADRSYLSEIVGVCRNKDVSILVNGDVLSYND 229
>UniRef50_A4RL93 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 313
Score = 72.5 bits (170), Expect = 7e-12
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 76 PVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVK 135
P I QF AN + AS LV P+V GVDLNCGCPQ WA + G +L+ + E++ D+V
Sbjct: 41 PTIVQFGANVPVELARASSLVAPFVAGVDLNCGCPQSWACAETLGAALMERRELVRDMVV 100
Query: 136 GLRNVL---------------PNKFSISVKIRLLNDIKKTVILCQQL----EKCGVTFLT 176
R+ L P S+SVKIR+ D++KT+ + + FLT
Sbjct: 101 ETRSRLASDGWAVGLERDKNDPKGRSVSVKIRVHKDLRKTMDFIDTVIGDPNARNIDFLT 160
Query: 177 -SMEEHCTKSSGPVDINGLKEVREA 200
T S P+++ L + E+
Sbjct: 161 IHPRTRATPSREPINVESLSILVES 185
>UniRef50_A6DPY9 Cluster: Putative uncharacterized protein; n=1;
Lentisphaera araneosa HTCC2155|Rep: Putative
uncharacterized protein - Lentisphaera araneosa HTCC2155
Length = 330
Score = 72.1 bits (169), Expect = 1e-11
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 6/181 (3%)
Query: 45 DLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAANNRDDFVDASKLVYPY-VDGV 103
DL T I S + ++ + + + D P+ Q NN + +++KLV D V
Sbjct: 33 DLLCTEFIRISSHKPSMRSLKKQIVKSG-DIPLSVQIMGNNAELMAESAKLVVDCGADAV 91
Query: 104 DLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVI- 162
D+N GCP K A+K G G ++L P++ Y ++ +R +P ++S KIR D K+ V
Sbjct: 92 DVNMGCPTKRAVKGGVGSAMLKDPKLCYQVLASMREQVP--CALSAKIRAGFDNKEGVFE 149
Query: 163 LCQQLEKCGVTFL-TSMEEHCTKSSGPVDINGLKEVREALSVPMVANGGVKHLNDATTYM 221
+ Q + G +L G D + ++E +P++ NG V+ DA
Sbjct: 150 ILQAIVDSGADYLAVHPRRRVDHYEGHSDWRIISALKEKSPIPVIGNGDVRTAADAVRMF 209
Query: 222 K 222
K
Sbjct: 210 K 210
>UniRef50_Q74EF7 Cluster: Dihydrouridine synthase family protein;
n=2; Deltaproteobacteria|Rep: Dihydrouridine synthase
family protein - Geobacter sulfurreducens
Length = 325
Score = 71.7 bits (168), Expect = 1e-11
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 1/188 (0%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ APM + + FR L R A LCFT M+ + + K + D P+ Q
Sbjct: 17 ILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGLVREGKKSFELLRSVPGDRPLGIQLF 76
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
++ D + V Y D +D+N GCP K + G G +L+ +P+ + IV+ +R
Sbjct: 77 GDDPDVMGRVAATVDGYGDLIDINMGCPVKKVVGTGAGSALMREPDKVRAIVRAVRRATR 136
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVREAL 201
++ ++ + + + + E+ G +T G D L E+++A+
Sbjct: 137 LPLTVKIRSGWSCEDANFIQIARIAEEEGCNAVTLHPRSRAQMFEGTADWTKLAELKQAV 196
Query: 202 SVPMVANG 209
++P++ +G
Sbjct: 197 AIPVIGSG 204
>UniRef50_Q31II6 Cluster: Dihydrouridine synthase; n=1;
Thiomicrospira crunogena XCL-2|Rep: Dihydrouridine
synthase - Thiomicrospira crunogena (strain XCL-2)
Length = 320
Score = 71.3 bits (167), Expect = 2e-11
Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 6/202 (2%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM + +R + R A + M+ + + S + T P I Q
Sbjct: 15 APMAGITDRVYRDICRESGASYAVSEMVASKKQLRESAKSSTRHADKTETSPRIVQLLGT 74
Query: 85 NRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
+ ++ VDA+ D +DLN GCP K G +L+ +PE + DI K L +
Sbjct: 75 HPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMGQPERVADIFKSLTEAI-- 132
Query: 144 KFSISVKIRLLNDIK--KTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVREA 200
++VKIR D+ V + + ++ G+ +T K +G + + +K V++A
Sbjct: 133 DLPVTVKIRTGTDVDNINAVEIAKLAQELGLKAITIHGRTRADKFNGQAEYDTIKAVKQA 192
Query: 201 LSVPMVANGGVKHLNDATTYMK 222
+ +P++ANG + +A +K
Sbjct: 193 VDIPVIANGDICSPKEAQFVLK 214
>UniRef50_A4XH30 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
Putative TIM-barrel protein, nifR3 family -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 328
Score = 71.3 bits (167), Expect = 2e-11
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 13/201 (6%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIA-QFAA 83
APM ++ FR+L F AD+ T M+ A + S+ + E ++ + D + Q
Sbjct: 11 APMAGFTDKVFRSLCSRFGADVTVTEMVSAKAITMGSQ-KTKELISFSEDEKIKGVQIFG 69
Query: 84 NNRDDFVDASKLV---YPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
++ +A K++ + Y D +D+N GCP +K G G +L+ P + IV+ + V
Sbjct: 70 SDPHVMAEAVKIIQDEFEY-DFIDINMGCPVPKVVKSGEGSALMKNPSLAAKIVEEVAKV 128
Query: 141 LPNKFSISVKIRLLND---IKKTVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKE 196
++ +SVKIR D I C +++ G +F+T T+ SG D +K
Sbjct: 129 --SRKPVSVKIRKGFDEENINAPEFAC-IMQESGASFITVHGRTRTQMYSGKADWEIIKM 185
Query: 197 VREALSVPMVANGGVKHLNDA 217
V+E + +P+VANG + A
Sbjct: 186 VKEKVKIPVVANGDIVDFESA 206
>UniRef50_A5DYF6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 504
Score = 71.3 bits (167), Expect = 2e-11
Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 30/193 (15%)
Query: 14 AKINKTYL-KVC-APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQN----------- 60
+K+ TY KVC APMVR ++ R L + DL ++P + Q
Sbjct: 3 SKMALTYTNKVCLAPMVRSGELPIRLLALRYGCDLVWSPEYIDRKIIQTQRRVNAELNTI 62
Query: 61 ----------SKARANEFMTTTTDFP-----VIAQFAANNRDDFVDASKLVYPYVDGVDL 105
SK + N+ P +I Q + + V+A+ V VDG+DL
Sbjct: 63 DYIIPNNKDPSKMKHNQDNVVFRKHPEETGKLIFQLGTSTPELAVEAALRVIEDVDGIDL 122
Query: 106 NCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL--PNKFSISVKIRLLNDIKKTVIL 163
NCGCP+ ++ G G LL P+I+ I++ L + PNK IS KIRLL + + + +L
Sbjct: 123 NCGCPKSFSTHGGMGAELLKTPDILCSILRALVEKVGNPNKKPISCKIRLLPNFEASKLL 182
Query: 164 CQQLEKCGVTFLT 176
+Q+ + G+ LT
Sbjct: 183 IEQICQTGIRNLT 195
>UniRef50_A1SX05 Cluster: Dihydrouridine synthase, DuS; n=3;
Alteromonadales|Rep: Dihydrouridine synthase, DuS -
Psychromonas ingrahamii (strain 37)
Length = 314
Score = 70.9 bits (166), Expect = 2e-11
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 71 TTTDFPVIAQFAANNRDDFVD-ASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEI 129
T + PV Q N + A + + DG+DLN GCP K K+ G LL PE
Sbjct: 59 TASGTPVRIQLLGQNPQCLAENAHQAISIGSDGIDLNFGCPAKTVNKNKGGAVLLKSPEA 118
Query: 130 IYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVI-LCQQLEKCGVTFLTSMEEHCTKSSG- 187
+Y IV +R +P ++SVKIRL + K I Q ++ G L TK+ G
Sbjct: 119 LYQIVTEVRKAVPVFQTLSVKIRLGYEDKSLAIENAQAIQAAGADELAVHAR--TKAEGY 176
Query: 188 --PVDINGLKEVREALSVPMVANGGVKHLNDATTYMK 222
P + + ++++A+++P+ ANG + ++DA M+
Sbjct: 177 RPPAHWHWIAKIKDAITIPVTANGDIFSVDDAKRCME 213
>UniRef50_Q550J6 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 392
Score = 70.9 bits (166), Expect = 2e-11
Identities = 42/144 (29%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 15 KINKTYLKVCAPMVRYSKVHFRTLVRNF--NADLCFTPMILADSFCQNSKARANEFMTTT 72
K++K + APM + + FR L+ N ++ F + AD +N +A ++ +T
Sbjct: 7 KLSKPIFSL-APMADVTDISFRFLLANCMGKPNVIFNEFVSADGLARNREALIDKLGYST 65
Query: 73 TDFPVIAQFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAM--KDGYGCSLLSKPEI 129
+ P++AQF N + F +++K+ DGVD+N GCP + + K G +L++ P +
Sbjct: 66 QEKPIVAQFFGNKPEYFYESAKIANELGYDGVDINMGCPSRKVLSPKQASGAALITNPSL 125
Query: 130 IYDIVKGLRNVLPNKFSISVKIRL 153
+IVK + L + +SVK R+
Sbjct: 126 AKEIVKITKEALNFEKPVSVKTRI 149
>UniRef50_Q4PIC3 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 364
Score = 70.9 bits (166), Expect = 2e-11
Identities = 63/208 (30%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 18 KTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILA-----DSFCQNSKARANEFMTTT 72
++ L APMV S + FR A L +T M LA D + S ++ E +
Sbjct: 10 ESLLYCAAPMVGQSDLAFRLQTVQNGATLTWTQMYLAPELSSDQYMLESLLKSLEMGSNA 69
Query: 73 T--------------DFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDG 118
T P + Q A NN V+A++ V PY D +DLN GCPQ+ A +
Sbjct: 70 TKNMARYRASPLHDQSAPQVVQLAGNNVQQLVEAARRVAPYADAIDLNLGCPQRHAEQGH 129
Query: 119 YGCSLLSKPE--IIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT 176
YG LL K ++ +IV G+ V I+ KIRL ++T L L G + +T
Sbjct: 130 YGACLLPKQNWPLVAEIVSGM--VQAVDVPITTKIRLPVPKEQTAQLAVMLAHAGSSLVT 187
Query: 177 ---SMEEHCTKSSGPVDINGLKEVREAL 201
+ G D++ + +VREAL
Sbjct: 188 VHPRFASSARRRKGLADLDQVVKVREAL 215
>UniRef50_Q7MXX6 Cluster: TIM-barrel protein, putative, NifR3
family; n=23; Bacteroidetes/Chlorobi group|Rep:
TIM-barrel protein, putative, NifR3 family -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 333
Score = 70.5 bits (165), Expect = 3e-11
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 8/193 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM + V FR + + F ADL ++ + AD+ + + ++ P+ Q
Sbjct: 16 APMEDVTDVAFRIMCKQFGADLVYSEFLSADALIRQVAGTFRKMAIDESERPMAVQIYGR 75
Query: 85 NRDDFVDASKLVYPYVDG-VDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
+ V+A++L +DLN GCP K G G +L ++ +I + + V
Sbjct: 76 DVASMVEAARLCESAGPNLIDLNFGCPVKRVAGKGAGSGMLRNIPLMIEITREV--VKAV 133
Query: 144 KFSISVKIRL--LNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVRE- 199
K ++VK RL ND K V L +QL+ CG+ LT +G D + EV+
Sbjct: 134 KLPVTVKTRLGWDNDSKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGTADWTLIGEVKNN 193
Query: 200 -ALSVPMVANGGV 211
+ +P++ NG V
Sbjct: 194 PRMQIPIIGNGDV 206
>UniRef50_Q6BX60 Cluster: Debaryomyces hansenii chromosome B of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome B of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 374
Score = 70.5 bits (165), Expect = 3e-11
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 20/172 (11%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSF--CQ---NSKARANEFMTTTTD----- 74
APMVR ++ R + + ADL +TP I+ C+ N +F+
Sbjct: 11 APMVRSGEIPTRLMALRYGADLVWTPEIVDKKLIKCERVINDDLGTVDFLDPNKKVVFRT 70
Query: 75 FP------VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPE 128
+P +I Q + + + V A+K+V VDG+DLNCGCP+ ++ G G +LL+ P+
Sbjct: 71 YPAEELGKLIFQIGSADPELAVQAAKIVAQDVDGIDLNCGCPKPFSTHSGMGAALLTTPD 130
Query: 129 IIYDIVKGLRNVLPNKFS--ISVKIRLLN--DIKKTVILCQQLEKCGVTFLT 176
++ I++ L + + + IS KIRLL+ D+ ++ L +L K G++ LT
Sbjct: 131 LLELILRNLVSEVGKVYDIPISAKIRLLDDTDVTPSLELIDRLCKTGISNLT 182
>UniRef50_O67533 Cluster: Probable tRNA-dihydrouridine synthase;
n=1; Aquifex aeolicus|Rep: Probable tRNA-dihydrouridine
synthase - Aquifex aeolicus
Length = 316
Score = 70.5 bits (165), Expect = 3e-11
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 5/198 (2%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ APM Y+ FR L R AD +T +I A +N + T + P+ Q
Sbjct: 9 ILAPMASYTHSAFRRLCRRLGADRTYTELISAVGVLRNGIPMKLAYFTEE-ERPIHIQVF 67
Query: 83 ANNRDDFVDASKLVYPYV--DGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
+N ++ AS ++ + D +D+N GC +++ +L P ++ ++VK
Sbjct: 68 GSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGEVVKETVEA 127
Query: 141 L-PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVR 198
L P +S KIRL + + + ++L+K GV+ + + SG + +KE +
Sbjct: 128 LKPYGIPVSAKIRLGFEKDEVERIVEELQKAGVSLIAIHARTAKQGFSGKALWHRIKEAK 187
Query: 199 EALSVPMVANGGVKHLND 216
+ SVP++ +G VK D
Sbjct: 188 KVASVPIIGSGDVKSWRD 205
>UniRef50_Q899H0 Cluster: Nitrogen regulation protein nifR3; n=24;
Clostridia|Rep: Nitrogen regulation protein nifR3 -
Clostridium tetani
Length = 322
Score = 70.1 bits (164), Expect = 4e-11
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 7/210 (3%)
Query: 15 KINKTYLK---VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTT 71
KI++ LK AP+ + + FR L + L +T M+ A + +S + +
Sbjct: 2 KISRLELKGNVFLAPLAGVTDLAFRGLCKRMGCTLVYTEMVSAKALFYDSDKTKDMLRFS 61
Query: 72 TTDFPVIAQFAANNRDDFVDASKLVYPYVDGV---DLNCGCPQKWAMKDGYGCSLLSKPE 128
+ P+ Q D + + + D V D+N GCP +K+G G +L+ P+
Sbjct: 62 KEELPIAVQIFGKEPDIMANVVEKYFNSNDNVCLIDINMGCPAPKIVKNGEGSALMKNPK 121
Query: 129 IIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS-SG 187
+ DIV+ ++ V ++ + ND + + +E G LT + G
Sbjct: 122 LASDIVESIKKVSTKPVTVKFRKGFDNDNINALEFAKIMENSGADALTIHGRTREQMYQG 181
Query: 188 PVDINGLKEVREALSVPMVANGGVKHLNDA 217
D +K+V+E++ +P++ NG V DA
Sbjct: 182 KADWEIIKKVKESVKIPVIGNGDVFTGEDA 211
>UniRef50_Q47C15 Cluster: Dihydrouridine synthase, DuS; n=2;
Betaproteobacteria|Rep: Dihydrouridine synthase, DuS -
Dechloromonas aromatica (strain RCB)
Length = 319
Score = 70.1 bits (164), Expect = 4e-11
Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 7/151 (4%)
Query: 71 TTTDFPVIAQFAANNRDDFVD-ASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEI 129
T T P+ Q ++ + A +LV GVDLN GCP + G +LL +PE+
Sbjct: 60 TRTGTPMRVQLLGSDPHFMAENARRLVALNPAGVDLNFGCPAPTVFRHRGGSALLGEPEL 119
Query: 130 IYDIVKGLRNVLPNKFSISVKIRL-LNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSG- 187
+ +I +R+V+P + K+RL ++D + + Q LE G+ L + T+S G
Sbjct: 120 LNEITSAVRSVVPAHIPFTAKMRLGIDDTSRAIDCAQALEAAGINEL--IVHGRTRSDGY 177
Query: 188 --PVDINGLKEVREALSVPMVANGGVKHLND 216
P + +VR+A+ +P++ANG V + D
Sbjct: 178 RPPARWEWIDKVRDAIHIPLIANGEVWTVED 208
>UniRef50_Q1IVR5 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=2; Acidobacteria|Rep: Dihydrouridine synthase
TIM-barrel protein nifR3 - Acidobacteria bacterium
(strain Ellin345)
Length = 370
Score = 69.7 bits (163), Expect = 5e-11
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 10/202 (4%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNA-DLCFTPMILADSFCQNSKARANEFMTTT-TDFPVIAQ 80
V APM + FR +RN L T AD + +A+A ++T + P+ AQ
Sbjct: 35 VLAPMAGVTDTVFRRFIRNLGGCGLMMTEFTSADGLARMREAKARRYLTFYGNERPISAQ 94
Query: 81 FAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
++ + DA+K+V D VDLN GCP K +K G LL I I + +R
Sbjct: 95 LFGSDAETLADAAKVVQDLGFDLVDLNLGCPSKRVVKCNGGSGLLRDLPQIKVIFESVRK 154
Query: 140 VLPNKFSISVKIRLLNDIKKTVI--LCQQLEKCGVTFLTSMEEHCTKS--SGPVDINGLK 195
+ F +VK R + K+ V L + E CG+ +M + SG + +
Sbjct: 155 AVTIPF--TVKFRAGWNEKELVFLELAKLAENCGLN-AVAMHARTREQGYSGQANWGWIA 211
Query: 196 EVREALSVPMVANGGVKHLNDA 217
++++ + +P++ NG ++ DA
Sbjct: 212 DLKQVVKIPVIGNGDIRTPEDA 233
>UniRef50_A6BZR9 Cluster: Predicted TIM-barrel enzyme, possibly
dehydrogenase, nifR3 family protein; n=1; Planctomyces
maris DSM 8797|Rep: Predicted TIM-barrel enzyme,
possibly dehydrogenase, nifR3 family protein -
Planctomyces maris DSM 8797
Length = 355
Score = 69.7 bits (163), Expect = 5e-11
Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 4/197 (2%)
Query: 25 APMVRYSKVHFRTLVRNFNA-DLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
AP+ Y++ FR +R LC T ++LA S+ T+ D P+ Q
Sbjct: 28 APLAGYTQHAFRVAIRELGGVGLCTTDLVLASHLLSGSRKSKALLTTSPADRPLTIQIFG 87
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
+ V A++ + + VDLN GCP +G G ++ P+ +V + + +
Sbjct: 88 GITAELVAAARWLEQHGYAAVDLNMGCPMAKINGNGGGARIMCAPDAACQLVAEVVDAVS 147
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVREAL 201
++ +++ D +L ++ E+ GV +T + G VD+ G+++ EA+
Sbjct: 148 IPVTVKMRLGWDRDSITAPLLAREFEQAGVAAITVHGRTRNQGFGGTVDLQGIRQTVEAV 207
Query: 202 -SVPMVANGGVKHLNDA 217
+P++ NG V + DA
Sbjct: 208 QQIPVIGNGDVCTVEDA 224
>UniRef50_A6CBK4 Cluster: Predicted TIM-barrel enzyme, possibly
dehydrogenase, nifR3 family protein; n=1; Planctomyces
maris DSM 8797|Rep: Predicted TIM-barrel enzyme,
possibly dehydrogenase, nifR3 family protein -
Planctomyces maris DSM 8797
Length = 365
Score = 69.3 bits (162), Expect = 7e-11
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 8/204 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNA-DLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
+P+ Y+ + FR +VR L T ++ A + S+ T D P Q
Sbjct: 33 SPLAGYTNLPFRRIVRELGGVGLATTDLVNARGLLEGSEKTLQLTQTCPEDSPFAVQIFG 92
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
+ DA++L+ V +D+N GCP +K G G S++ +P +V+ + +
Sbjct: 93 SEPQQMKDAAQLLESRGVHSIDINMGCPVNRIVKGGAGASMMCRPSDTVSLVQTVVEAV- 151
Query: 143 NKFSISVKIRLLNDIKK--TVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVRE 199
K +SVK+RL D + ++ EK GV + + G V+ +G++ V E
Sbjct: 152 -KIPVSVKMRLGWDDSELSAPFFSREFEKVGVVAVAIHGRTREQGFRGVVNHDGIRRVVE 210
Query: 200 AL-SVPMVANGGVKHLNDATTYMK 222
A+ S+P++ NG V ++ +A +K
Sbjct: 211 AVDSIPVIGNGDVTNVAEADFMLK 234
>UniRef50_Q6SFW7 Cluster: NifR3/Smm1 family protein; n=1; uncultured
bacterium 578|Rep: NifR3/Smm1 family protein -
uncultured bacterium 578
Length = 322
Score = 68.9 bits (161), Expect = 9e-11
Identities = 41/189 (21%), Positives = 84/189 (44%), Gaps = 2/189 (1%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM S FR + R A L + M++ N+ + + P+ Q A +
Sbjct: 15 APMAGTSDKPFRMICREQGAALTTSEMVVMQKHLLNTNKSKHRLDFRSEQSPISIQIAGS 74
Query: 85 NRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
+ +++K + D +D+N GCP K G +L+ +++ DI+K + N +
Sbjct: 75 ESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSALMKNEKLVEDIIKAVVNAVNI 134
Query: 144 KFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVREALS 202
++ ++ + K + + E G+ L K +G + + +K+++ +S
Sbjct: 135 PVTLKMRTGWNEENKNAPTIAKIAEDNGIKMLAIHGRTRAQKYNGDAEYDTVKKIKGIVS 194
Query: 203 VPMVANGGV 211
+P+VANG +
Sbjct: 195 IPVVANGDI 203
>UniRef50_Q0YFW9 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=8; Desulfuromonadales|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Geobacter sp. FRC-32
Length = 343
Score = 68.9 bits (161), Expect = 9e-11
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 5/192 (2%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ APM + + R L R A L FT MI + + K + D P+ Q
Sbjct: 34 ILAPMAGLTNLPMRILARECGAALTFTEMISVNGLVREGKKTFDLLRRDPMDRPMGIQIF 93
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
++ + ++LV Y + +D+N GCP + + G G +LL +P + I+K +R
Sbjct: 94 GDDPQLLAEGARLVEQYGELIDINMGCPVRKVVGSGAGSALLREPAKVGMIIKAVRKA-- 151
Query: 143 NKFSISVKIRL-LNDIKKTVILCQQL-EKCGVTFLT-SMEEHCTKSSGPVDINGLKEVRE 199
+++KIR T + ++ E GV +T G D + ++E++E
Sbjct: 152 TSLPLTIKIRTGWGAADHTFLEIGRIAEAEGVDGVTLHPRSRAQMFEGHADWSRIRELKE 211
Query: 200 ALSVPMVANGGV 211
ALS+P++ +G +
Sbjct: 212 ALSIPVIGSGDI 223
>UniRef50_A2DYY3 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 313
Score = 68.5 bits (160), Expect = 1e-10
Identities = 52/212 (24%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANE--------------- 67
+ APMVR S + FR + ADL F+P ++ + ++ + +
Sbjct: 14 IAAPMVRGSSLSFRLACLEYGADLVFSPGLVDLAIIGSTMEKDDNNISLIKVENGHNRRI 73
Query: 68 FMTTTTDF-PVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSK 126
F TT + +I Q + + + A+ + + G+D+NCGCP+ +A G G + +
Sbjct: 74 FHTTAEERGKLIIQLITVDGPNAIKAADMCTEFASGIDINCGCPESFACHRGGGSKM--Q 131
Query: 127 PEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEE-HCTKS 185
E D+VK L+ + + ISVK+R+ + +++++ + + G +T K
Sbjct: 132 LESAVDVVKTLK--MNSPLPISVKMRVKDTVEESLQFAKAMVDAGAVAITVHGRLAADKR 189
Query: 186 SGPVDINGLKEVREALSVPMVANGGVKHLNDA 217
G VD +KE+ + ++ + NGG+ + DA
Sbjct: 190 HGSVDYEHMKEIFDNINCAKIGNGGICNKADA 221
>UniRef50_Q5ZRM0 Cluster: Nitrogen regulation protein; n=4;
Legionella pneumophila|Rep: Nitrogen regulation protein
- Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 329
Score = 67.7 bits (158), Expect = 2e-10
Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 6/192 (3%)
Query: 26 PMVRYSKVHFRTLVRNFNADL-CFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
P+ YS FR L + C + M A +++ T+ + Q + N
Sbjct: 25 PLAGYSCAPFRDLFNIYTPPAYCVSEMCSAIDILHKHSSQSRYIYRAPTEKFLAYQISGN 84
Query: 85 NRDDFVDAS-KLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
+A+ KL D +D+NCGCP+ K G G +LL P+ + I+ +R +
Sbjct: 85 EPHVLAEAAAKLQSLGADLIDINCGCPKSKIRKKGAGSALLEDPQKLIAIISRVRAAI-- 142
Query: 144 KFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSG-PVDINGLKEVREALS 202
+++KIR+ N+ +K + L +Q+E G L T+ P + + ++ A++
Sbjct: 143 SIPLTIKIRIQNN-EKDLTLAKQIEDAGAHALIVHGRRWTEDYDIPCNWQQIANIKNAVN 201
Query: 203 VPMVANGGVKHL 214
+P++ NG + ++
Sbjct: 202 IPVIVNGDINNI 213
>UniRef50_Q0FAI7 Cluster: tRNA-dihydrouridine synthase, putative;
n=1; alpha proteobacterium HTCC2255|Rep:
tRNA-dihydrouridine synthase, putative - alpha
proteobacterium HTCC2255
Length = 324
Score = 67.7 bits (158), Expect = 2e-10
Identities = 46/201 (22%), Positives = 91/201 (45%), Gaps = 4/201 (1%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSK-ARANEFMTTTTDFPVIAQFAA 83
+P+ + + +R LV +F A L + M+ + Q K ARA + + + Q A
Sbjct: 14 SPLAGITDLPYRNLVSSFGAGLVVSEMVASHEIMQKGKDARARAELGFNVEGTSV-QIAG 72
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
+ + +KL+ +D+N GCP K + G +L+ P++ +++ + N +
Sbjct: 73 RDAFWMSECAKLIEGNGAKIIDINMGCPAKSVVNGASGSALMRTPDLALKLIEAVVNAVD 132
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVREAL 201
++ ++ ++ L EK G+ +T C G D ++EV+EA+
Sbjct: 133 IPVTLKTRLGWDHNDLNAADLSSSAEKIGIQMITIHGRTRCQFYKGDADWRKIREVKEAV 192
Query: 202 SVPMVANGGVKHLNDATTYMK 222
++P++ANG + A MK
Sbjct: 193 NIPVIANGDIIDTPTAKLAMK 213
>UniRef50_Q14SX5 Cluster: Putative dihydrouridine synthase; n=1;
Ruminococcus flavefaciens|Rep: Putative dihydrouridine
synthase - Ruminococcus flavefaciens
Length = 332
Score = 67.3 bits (157), Expect = 3e-10
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 5/191 (2%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM + +R + + + A + M+ A C + + A T + P+ Q +
Sbjct: 19 APMAGVADRAYRLMCKRYGAAYVVSEMVSAKGICYSDRKTAELCTVTEEERPMAVQLFGS 78
Query: 85 NRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
D +A K+V Y D +D+N GCP + G G +L+ P + I + +
Sbjct: 79 EPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTGAGSALMKDPALAAAITEAAVKAAGD 138
Query: 144 KFSISVKIRL--LNDIKKTVILCQQLEKCGVTFLTSM-EEHCTKSSGPVDINGLKEVREA 200
++VKIR +D + + LE G + SG D+N +K V+EA
Sbjct: 139 T-PVTVKIRSGWSSDSINAPEMARALEASGTAAIAVHGRTRDMFYSGQSDMNVIKAVKEA 197
Query: 201 LSVPMVANGGV 211
+SVP++ NG +
Sbjct: 198 VSVPVIGNGDI 208
>UniRef50_Q5M689 Cluster: Possible transcriptional regulator; n=20;
Streptococcus|Rep: Possible transcriptional regulator -
Streptococcus thermophilus (strain ATCC BAA-250 / LMG
18311)
Length = 350
Score = 66.5 bits (155), Expect = 5e-10
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 9/201 (4%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V APM + FRT+ + F+A L MI N++ + + P+ Q
Sbjct: 45 VLAPMAGVTNSAFRTIAKEFSAGLVVMEMISEKGLLYNNEKTLHMLHIDENEHPMSIQLF 104
Query: 83 ANNRDDFVDASKLVYPYV--DGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
+ + A+ + D VD+N GCP +K+ G L P+ IY IVK + +V
Sbjct: 105 GGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLKDPDKIYHIVKEVTSV 164
Query: 141 LPNKFSISVKIRL-LNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS--SGPVDINGLKEV 197
L ++VK+R +D V E GV+ L +M + +G D L V
Sbjct: 165 L--DIPLTVKMRTGWSDSDLAVENALAAESAGVSAL-AMHGRTREQMYTGHCDHETLARV 221
Query: 198 REALS-VPMVANGGVKHLNDA 217
+A++ +P + NG V+++ DA
Sbjct: 222 AKAITKIPFIGNGDVRNVQDA 242
>UniRef50_A0LJ96 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Syntrophobacter fumaroxidans MPOB|Rep: Putative
TIM-barrel protein, nifR3 family - Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB)
Length = 352
Score = 66.5 bits (155), Expect = 5e-10
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 3/192 (1%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTT-TTDFPVIAQF 81
V APM + +R L+ +F A + T M+ +N +A + P+ Q
Sbjct: 25 VLAPMAGVTDSAYRALMADFGAAMVTTEMVSIQGLVRNQRATLDLCRQQHPVGVPLAVQV 84
Query: 82 AANNRDDFVDASKLVYPYVDG-VDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
+ +A++LV +D+N GCP + ++ G G LL P+ + +V+ ++
Sbjct: 85 FGRDPAVMAEAARLVEQGGAALIDINAGCPVRKVVRQGAGAILLKDPDRLAAMVEAVKRA 144
Query: 141 LPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVRE 199
+ ++ +++ N L +QL GV +T + SG D + + EV+
Sbjct: 145 VSVPVTVKIRVGWDNAANGVAGLARQLVSAGVDAITVHGRTAAQMYSGRADWSRIAEVKA 204
Query: 200 ALSVPMVANGGV 211
A++VP++ NG V
Sbjct: 205 AVAVPVIGNGDV 216
>UniRef50_Q64MI4 Cluster: Putative TIM-barrel enzyme; n=3;
Bacteroidales|Rep: Putative TIM-barrel enzyme -
Bacteroides fragilis
Length = 324
Score = 66.1 bits (154), Expect = 7e-10
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 8/193 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM + FR + + F AD+ +T + +D+ ++ + + PV Q
Sbjct: 16 APMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEERPVAIQIYGK 75
Query: 85 NRDDFVDASKLVYP-YVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
+ + V A+++V D +D+N GCP K G G +L + +I + + + +
Sbjct: 76 DTEAMVGAARIVEEAQPDILDINFGCPVKKVAGKGAGAGMLQNIPKMLEITRAVVDAV-- 133
Query: 144 KFSISVKIRLLNDIKKTVI--LCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVRE- 199
K ++VK RL D +I L +QL+ CG+ L +G D + EV+
Sbjct: 134 KIPVTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQMYTGEADWTLIGEVKNN 193
Query: 200 -ALSVPMVANGGV 211
+ +P++ NG V
Sbjct: 194 PRMHIPIIGNGDV 206
>UniRef50_Q6MNE4 Cluster: Dihydrouridine synthase family protein;
n=1; Bdellovibrio bacteriovorus|Rep: Dihydrouridine
synthase family protein - Bdellovibrio bacteriovorus
Length = 323
Score = 65.7 bits (153), Expect = 9e-10
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 76 PVIAQFAANNRDDF-VDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIV 134
PV Q + ++A + V GVDLN GCP K + G SLL + +++IV
Sbjct: 64 PVFVQLLGGQAEPLALNAQRAVKLGALGVDLNFGCPAKTVNRHDGGASLLKSCDRVFNIV 123
Query: 135 KGLRNVLPNKFSISVKIRL-LNDIKKTVILCQQLEKCGVTFLTSMEEHC-TKSSG---PV 189
+R +P ++ KIRL +D K + + Q +E+ T+LT HC TK+ G P
Sbjct: 124 DTVRKAVPADVPVTAKIRLGFDDPTKCLEIAQAVEEANATWLT---VHCRTKTDGYKPPA 180
Query: 190 DINGLKEVREALSVPMVANGGVKHLND 216
+ + +++E + ++ANG + ++ D
Sbjct: 181 YWDWIPKIKEKTKIKLIANGEIWNVAD 207
>UniRef50_Q0B0N8 Cluster: Putative TIM-barrel protein, NifR3 family;
n=2; Clostridiales|Rep: Putative TIM-barrel protein,
NifR3 family - Syntrophomonas wolfei subsp. wolfei
(strain Goettingen)
Length = 318
Score = 65.7 bits (153), Expect = 9e-10
Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 9/202 (4%)
Query: 22 KVCA-PMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDF-PVIA 79
+VCA PM S +R L R+F L + M+ +D + R ++ ++ + PV
Sbjct: 12 RVCAAPMAGVSDKAYRVLARDFGCGLVCSEMV-SDKGLVYGQGRTSKIADSSGEKRPVAV 70
Query: 80 QFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLR 138
Q + + A+++V D +D+N GCP +K+G G +L+ IV+ +
Sbjct: 71 QIFGSEAESMATAARIVEEMGADIIDINMGCPTPKIVKNGEGAALMLDITKSRGIVREVL 130
Query: 139 NVLPNKFSISVKIRLLNDIKKT--VILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLK 195
V+ K ++VK+R D + L Q+LE+ GV + + SG D N +K
Sbjct: 131 RVV--KVPVTVKMRKGWDENSINCLELAQKLEEEGVAAICLHPRSRQQFFSGSADWNLIK 188
Query: 196 EVREALSVPMVANGGVKHLNDA 217
E+++ L +P++ NG + +DA
Sbjct: 189 EMKKELKIPVIGNGDIWSADDA 210
>UniRef50_Q9JUP6 Cluster: tRNA-dihydrouridine synthase C; n=4;
Neisseria|Rep: tRNA-dihydrouridine synthase C -
Neisseria meningitidis serogroup A
Length = 333
Score = 65.7 bits (153), Expect = 9e-10
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 71 TTTDFPVIAQFAANNRDDFV-DASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEI 129
T + P Q ++ D+ +A + V D +DLN GCP + G LL +PE+
Sbjct: 71 TFSGTPCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGAILLKEPEL 130
Query: 130 IYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQ-QLEKCGVTFLTSMEEHCTKSSG- 187
I+ IVK LR LP ++ K+RL + K + C + + G LT TK+ G
Sbjct: 131 IFHIVKTLRERLPAHIPLTAKMRLGYEDKSPALECACAIAEGGACGLTVHAR--TKAEGY 188
Query: 188 --PVDINGLKEVREALSVPMVANGGVKHLND 216
P ++++R+++ +P+ ANG V L D
Sbjct: 189 EPPAHWEWIRKIRDSVDIPVTANGDVFSLQD 219
>UniRef50_Q8ZAX7 Cluster: tRNA-dihydrouridine synthase B; n=214;
Proteobacteria|Rep: tRNA-dihydrouridine synthase B -
Yersinia pestis
Length = 321
Score = 65.7 bits (153), Expect = 9e-10
Identities = 45/195 (23%), Positives = 90/195 (46%), Gaps = 10/195 (5%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILAD-SFCQNSKARANEFMTTTTDFPVI--A 79
+ APM + FR L A + + M+ ++ + K+R D P I
Sbjct: 13 IAAPMAGITDRPFRALCHGMGAGMAVSEMLSSNPEVWRTDKSRLR---MVHVDEPGIRNV 69
Query: 80 QFAANNRDDFVDASKL-VYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLR 138
Q A N+ D+ A+++ V +D+N GCP K + G +LL P+++ I+ +
Sbjct: 70 QIAGNDPDEMAAAARINVASGAQIIDINMGCPAKKVNRKLAGSALLQHPDLVKQILSAVV 129
Query: 139 NVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT--SMEEHCTKSSGPVDINGLKE 196
N + ++ ++ + + + + Q E CG+ LT C +G + + ++
Sbjct: 130 NAVDVPVTLKIRTGWSPEHRNCIEIAQLAENCGIQALTIHGRTRSCL-FNGEAEYDSIRA 188
Query: 197 VREALSVPMVANGGV 211
V++ +S+P++ANG +
Sbjct: 189 VKQTVSIPVIANGDI 203
>UniRef50_P37567 Cluster: Probable tRNA-dihydrouridine synthase 1;
n=31; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
1 - Bacillus subtilis
Length = 333
Score = 65.7 bits (153), Expect = 9e-10
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 3/198 (1%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V APM FR V+ F A L M+ + N+ + P+ Q
Sbjct: 14 VLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGMLYIDEREKPLSLQIF 73
Query: 83 ANNRDDFVDASKLV--YPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
++ V+A+K V D +D+N GCP K G L P+ IY++V + +
Sbjct: 74 GGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPDKIYEMVSAVVDA 133
Query: 141 LPNKFSISVKIRLLNDIKKTVILCQQLEKC-GVTFLTSMEEHCTKSSGPVDINGLKEVRE 199
+ ++ +++ D V Q +E+ G G + + +KEV++
Sbjct: 134 VNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQMYEGTANWDIIKEVKQ 193
Query: 200 ALSVPMVANGGVKHLNDA 217
++S+P++ NG VK DA
Sbjct: 194 SVSIPVIGNGDVKTPQDA 211
>UniRef50_A6LGT0 Cluster: Putative TIM-barrel enzyme; n=1;
Parabacteroides distasonis ATCC 8503|Rep: Putative
TIM-barrel enzyme - Parabacteroides distasonis (strain
ATCC 8503 / DSM 20701 / NCTC11152)
Length = 329
Score = 65.3 bits (152), Expect = 1e-09
Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 8/193 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM + + FR + + F AD+ +T + +D+ ++ + + + PV Q
Sbjct: 16 APMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERPVAIQIYGK 75
Query: 85 NRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
+ V+A+++ D +D+N GCP K G G +L ++ +I + + V
Sbjct: 76 DVASMVEAARICEEARPDILDINFGCPVKKVAGKGAGAGMLRNIPLMLEITREV--VKAV 133
Query: 144 KFSISVKIRLLNDIKKTVI--LCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVRE- 199
++VK RL D VI L +QL+ CG+ L+ +G D ++ V+
Sbjct: 134 NIPVTVKTRLGWDADNRVIVDLAEQLQDCGIAALSIHGRTRAQMYTGEADWTLIRAVKNN 193
Query: 200 -ALSVPMVANGGV 211
+ +P++ NG V
Sbjct: 194 PRMQIPIIGNGDV 206
>UniRef50_Q7R3H4 Cluster: GLP_158_49916_51304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_158_49916_51304 - Giardia lamblia
ATCC 50803
Length = 462
Score = 65.3 bits (152), Expect = 1e-09
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 22 KVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKAR---ANEFM-TTTTDFPV 77
K APMV S++ +R L R + +L +TPM ++ +SKA +E + D P+
Sbjct: 19 KGIAPMVDGSELPYRLLTRRYGVELAWTPMHSTNTLVTSSKAMTQLVDELKHGESIDRPL 78
Query: 78 IAQFAANNRDDFVDASKLVYPY-----VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYD 132
+ Q + NN +F A + D V+LN GCPQ A++ YG L+ ++ +
Sbjct: 79 VLQLSGNNPSNFELAYNTLVQMGAGCCFDVVELNMGCPQAVALRGKYGAYLMGHLDLAEE 138
Query: 133 IVKGLRNVLPNK---FSISVKIRLLNDIKKTVILCQQLEKCGVTFLT 176
I++ L V ++VK RL K TV +C +L G+ T
Sbjct: 139 ILRTLVAVTARSGLGHKVAVKTRLDISDKDTVKMCLRLCSTGIAMFT 185
>UniRef50_A2QES0 Cluster: Contig An02c0390, complete genome; n=12;
Pezizomycotina|Rep: Contig An02c0390, complete genome -
Aspergillus niger
Length = 446
Score = 65.3 bits (152), Expect = 1e-09
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 12/155 (7%)
Query: 77 VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
+I Q + V A+KLV V G+D+N GCP+ ++ G G +LL P+ + I++
Sbjct: 105 LIYQIGTATPEIAVQAAKLVAGDVAGIDVNSGCPKPFSTSGGMGAALLKTPDKLVAILEA 164
Query: 137 L-RNV-LPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHC-TKSSGPVD--- 190
L + V P + ISVKIR+L D ++T L +L K G+T LT HC T P +
Sbjct: 165 LVKEVGTPFQIGISVKIRILKDPEETRALVSRLVKTGITGLT---VHCRTPPMRPRERAI 221
Query: 191 ---INGLKEVREALSVPMVANGGVKHLNDATTYMK 222
+ + ++ V V NG V ++ MK
Sbjct: 222 RDQVRMIADICHEAGVACVINGDVTSKDEGHALMK 256
>UniRef50_Q6MNE9 Cluster: Nitrogen regulation protein nifR3; n=1;
Bdellovibrio bacteriovorus|Rep: Nitrogen regulation
protein nifR3 - Bdellovibrio bacteriovorus
Length = 352
Score = 64.9 bits (151), Expect = 2e-09
Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 15/220 (6%)
Query: 13 DAKINKTYLKVC-APMVRYSKVHFRTLVRNFNADLCFT----PMILADSFCQNSKARANE 67
D K+N +C APMV + V R ++R++ +T M+ + + + E
Sbjct: 11 DGKVN---FPLCLAPMVGLTHVALREVMRDYLPAEAYTIWPTEMLNSRRIPGENLEKTPE 67
Query: 68 FMTTTTDFPVIAQFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSK 126
M + ++ Q N D ++ K + + + +D+N GCP + A+K YG +L+
Sbjct: 68 TMRAAYEPGLVPQILGNEEDAIAESVKRLVEWGAEAIDINMGCPVQKALKHNYGVALMGD 127
Query: 127 PEIIYDIVKGLRNVLPNKFSISVKIRLLNDIK---KTVILCQQLEKCGVTFL-TSMEEHC 182
P ++V+ V + +SVK+R + K + + L + G ++
Sbjct: 128 PAYAAEVVR--MTVKNSTVPVSVKLRAVGSTKEFDELLTFVSGLRQSGAAWVCLHPRTAA 185
Query: 183 TKSSGPVDINGLKEVREALSVPMVANGGVKHLNDATTYMK 222
K G D +K++ +A+ P++ NG V+ +DA +K
Sbjct: 186 QKRRGNADWEQIKQLHKAVDFPVIGNGDVQTYDDAINMLK 225
>UniRef50_Q6AKJ6 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 354
Score = 64.9 bits (151), Expect = 2e-09
Identities = 59/198 (29%), Positives = 90/198 (45%), Gaps = 7/198 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNA-DLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQ-FA 82
APMV S R+L+ + L +T M+ A + A ++ TT + P+I Q F
Sbjct: 47 APMVGLSHSALRSLIADLGGCGLFYTEMLAARRLPHENPAVSSYLHTTPCERPLIYQLFI 106
Query: 83 ANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
A+ + K+ DGVD+N GCP + G G +L + + DIV R
Sbjct: 107 ADVKYVAPALDKIHRLGGDGVDINLGCPAPSVRRGGAGAALAEDWDRVRDIVSSARR--H 164
Query: 143 NKFSISVKIRLLNDIKKTVIL--CQQLEKCGVTFL-TSMEEHCTKSSGPVDINGLKEVRE 199
++S KIR+ + K+ +L C+ LE GV L H K L + E
Sbjct: 165 TDLTLSAKIRVGHVGKEAHLLDFCKMLEAEGVDLLAVHARYHGEKFCRKPRWQLLAPICE 224
Query: 200 ALSVPMVANGGVKHLNDA 217
L +P+ ANGG+ ++DA
Sbjct: 225 QLDIPIFANGGIFSVDDA 242
>UniRef50_Q1Q3Q8 Cluster: Strongly similar to tRNA-dihydrouridine
synthase; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Strongly similar to tRNA-dihydrouridine synthase -
Candidatus Kuenenia stuttgartiensis
Length = 341
Score = 64.1 bits (149), Expect = 3e-09
Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 2/202 (0%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ APM +S + +R + R F + +T ++ N+K + PV Q
Sbjct: 36 ILAPMAGFSDMPYRLICRRFGMSMSYTEVVSVSGIVWNNKKTFKLLDFKEEERPVTFQVV 95
Query: 83 ANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
N+ +A K + D +D+N GC G G +L P I + L L
Sbjct: 96 GNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGKGAGAGMLKHPSKISKMFNNLTGSL 155
Query: 142 PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVREA 200
+ +++ + + + + + LE+ G + + ++ SG D + + EV+++
Sbjct: 156 SVPVTGKIRLGWDHKTRNYIEVARILEENGASLIAVHGRTRSQYFSGAADWDAIAEVKQS 215
Query: 201 LSVPMVANGGVKHLNDATTYMK 222
+ +P++ANG V+ + D K
Sbjct: 216 VKIPVIANGDVRSVADIAEIKK 237
>UniRef50_Q1DPY5 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 453
Score = 64.1 bits (149), Expect = 3e-09
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 77 VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
+I Q N V+A+K+V V G+D+N GCP+ ++ G G +LL P+ + I++
Sbjct: 106 LIFQLGTANPSLAVEAAKVVAADVSGIDVNSGCPKPFSTSGGMGAALLQTPDRLVSILEA 165
Query: 137 LRNVL--PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT 176
L + P + ISVKIRLL + ++T L ++ + G+T LT
Sbjct: 166 LVEEIGKPYEIGISVKIRLLAEPERTEALVTRVCRTGITGLT 207
>UniRef50_Q7VKU5 Cluster: tRNA-dihydrouridine synthase C; n=118;
Gammaproteobacteria|Rep: tRNA-dihydrouridine synthase C
- Haemophilus ducreyi
Length = 325
Score = 64.1 bits (149), Expect = 3e-09
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 102 GVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTV 161
G+D NCGCP K G +LL PE+IY K +R +P +SVK+RL D
Sbjct: 96 GIDFNCGCPSKTVNGSHGGAALLKDPELIYCATKAIREAVPKAQPVSVKMRLGWDCASQC 155
Query: 162 I-LCQQLEKCGVTFLTSMEEHCTKSSG----PVDINGLKEVREALSVPMVANGGVKHLND 216
+ +++ G +T TK G ++ + ++++ L++P++ANG + N
Sbjct: 156 FEIADAIQQAGADEITVHGR--TKQDGYRAERINWQAIGQIQQRLNIPVIANGEILDFNS 213
Query: 217 A 217
A
Sbjct: 214 A 214
>UniRef50_Q607L4 Cluster: TIM-barrel protein, yjbN family; n=10;
Proteobacteria|Rep: TIM-barrel protein, yjbN family -
Methylococcus capsulatus
Length = 327
Score = 63.7 bits (148), Expect = 3e-09
Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 2/191 (1%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ APM + + FR L R F A L + MI A Q ++ P+ Q
Sbjct: 13 ILAPMAGVTDLPFRRLCRQFGAGLAVSEMISASPALQATRKSRLRQDHRGEPGPISVQIV 72
Query: 83 ANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
+ + +A++ D +D+N GCP K G +LL +++ +I++ + +
Sbjct: 73 GADPREMAEAARRTVDLGADIIDINMGCPAKKVCNVAAGSALLRDEKLVANILEAVVQAV 132
Query: 142 PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVREA 200
P ++ ++ + + V + + E G+ LT +G + + + EV++A
Sbjct: 133 PVPVTLKIRTGWDSASRNAVSIGKIAESAGIRALTVHGRTRACGFAGAAEYSTITEVKKA 192
Query: 201 LSVPMVANGGV 211
+ +P++ANG +
Sbjct: 193 IGIPVIANGDI 203
>UniRef50_Q0G7A4 Cluster: Nitrogen regulation protein nifr3; n=2;
Aurantimonadaceae|Rep: Nitrogen regulation protein nifr3
- Fulvimarina pelagi HTCC2506
Length = 344
Score = 63.7 bits (148), Expect = 3e-09
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 8/202 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ S V FR L R F A L + M+ + F + ++ + D P +
Sbjct: 23 APLSGISDVPFRRLSRRFGAGLVVSEMVASGEFVKGAEEGK---LRALRDGPGVHTVQLA 79
Query: 85 NRDDF---VDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG-LRNV 140
RD A +L D +D+N GCP K + G +L+ +P++ + IV+ +R
Sbjct: 80 GRDPIWMEEAARRLADEGADLIDINMGCPAKKVVGGLSGSALMREPDLAFSIVEATVRGA 139
Query: 141 LPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVRE 199
S+ +++ D + + E GVT +T G D + V+
Sbjct: 140 GATPVSLKMRLGWCRDSMNAAEIAVRAEAAGVTMITVHGRTRAEFYEGTADWRAICSVKR 199
Query: 200 ALSVPMVANGGVKHLNDATTYM 221
++ VP+VANG + N + +
Sbjct: 200 SVGVPVVANGDLTEANQLSAIL 221
>UniRef50_Q127F8 Cluster: Dihydrouridine synthase, DuS; n=3;
Proteobacteria|Rep: Dihydrouridine synthase, DuS -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 344
Score = 62.9 bits (146), Expect = 6e-09
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Query: 71 TTTDFPVIAQFAANNRDDFVD-ASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEI 129
T PV AQ ++ + A++L G+DLN GCP + G G SLL +PE
Sbjct: 65 TLAGVPVRAQLLGSDPACMAENAARLATLGPAGIDLNFGCPAAVVNRHGGGASLLKEPET 124
Query: 130 IYDIVKGLRNVLPNKFSISVKIRL-LNDIKKTVILCQQLEKCGV-TFLTSMEEHCTKSSG 187
+ IV +R +P +S K+RL ND + V + + G +
Sbjct: 125 LLAIVSAVRRAVPAGMPVSAKMRLGYNDDSRAVECALAIAEGGAGELVVHARTKAQAYKP 184
Query: 188 PVDINGLKEVREALSVPMVANGGVKHLNDA 217
P + ++R A+ +P+VANG + ++DA
Sbjct: 185 PAYWERIADIRAAVQIPVVANGEIWTVDDA 214
>UniRef50_Q7R1J1 Cluster: GLP_38_15456_16676; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_38_15456_16676 - Giardia lamblia
ATCC 50803
Length = 406
Score = 62.9 bits (146), Expect = 6e-09
Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 25 APMVRYSKVHFRTLVRNFNAD-------LCFTPMILADSFCQNSKARANEFMTTTTDFPV 77
APM S FR L++ A+ FT M AD+ NS R T +
Sbjct: 56 APMTHASGAAFRQLIQGHMAEENERTKYTGFTQMYTADALLHNSPLRDAVLSTAAPGEKI 115
Query: 78 IAQFAANNRDDFVDASKLVY--PYVD---GVDLNCGCPQKWAMKDGYGCSLLSKPEIIYD 132
I Q NN F A++L++ P +D+N GCP A GYG + +++
Sbjct: 116 ILQLCGNNPSTFRAAAELLHDSPIASQLVALDINLGCPASCASSKGYGFYVAQNWPLVHQ 175
Query: 133 IVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTK 184
I+ + F ++ KIR LN I+KT+ L G + +T H T+
Sbjct: 176 IISETSSA--RLFPVTCKIRPLNSIEKTIDYMVLLVMSGASGITIHMRHTTR 225
>UniRef50_Q9CLW3 Cluster: tRNA-dihydrouridine synthase B; n=17;
Pasteurellaceae|Rep: tRNA-dihydrouridine synthase B -
Pasteurella multocida
Length = 332
Score = 62.9 bits (146), Expect = 6e-09
Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 8/192 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADS---FCQNSKARANEFMTTTTDFPVIAQF 81
APM + FR + ++ A L F+ M+ + + SK R + Q
Sbjct: 15 APMAGITDQPFRRICTHYGAGLTFSEMMSTNPQVWHTEKSKLRLAHHQEAGIN---AVQI 71
Query: 82 AANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
A + D+ A+++ Y + +D+N GCP K + G +LL P+++ I+ +
Sbjct: 72 AGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSALLQYPDLVKQILNKVVKS 131
Query: 141 LPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVRE 199
+ ++ ++ D + + + + E+CG+ LT G + + +K V+E
Sbjct: 132 VTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTRSCMFEGEAEYDNIKAVKE 191
Query: 200 ALSVPMVANGGV 211
LS+P++ANG +
Sbjct: 192 QLSIPIIANGDI 203
>UniRef50_P53720 Cluster: tRNA-dihydrouridine synthase 2; n=7;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 384
Score = 62.9 bits (146), Expect = 6e-09
Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 12/122 (9%)
Query: 100 VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGL-RNV-LPNKFSISVKIRLLNDI 157
V G+D+N GCP+ +++ G G +LL P+ + I+K L +NV P+ ISVKIRLL+
Sbjct: 108 VSGIDINAGCPKHFSIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTK 167
Query: 158 KKTVILCQQLEKCGVTFLTSMEEHCTKS-----SGPVD--INGLKEVREALSVPMVANGG 210
+ T+ L ++L G+T LT HC K+ P+ I + E+ +A +V ++ NG
Sbjct: 168 QDTLQLVKRLCATGITNLT---VHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGA 224
Query: 211 VK 212
++
Sbjct: 225 IR 226
>UniRef50_Q8XYX1 Cluster: tRNA-dihydrouridine synthase C; n=26;
Proteobacteria|Rep: tRNA-dihydrouridine synthase C -
Ralstonia solanacearum (Pseudomonas solanacearum)
Length = 326
Score = 62.5 bits (145), Expect = 8e-09
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Query: 71 TTTDFPVIAQFAANNRDDFV-DASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEI 129
T + P++ Q ++ + +A++ G+DLN GCP K + G G LL+ PE+
Sbjct: 60 TASGTPMVIQLLGSDPEWLARNAAQAATVSPHGIDLNFGCPAKVVNRHGGGAMLLATPEL 119
Query: 130 IYDIVKGLRNVLPNKFSISVKIRL-LNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSG- 187
++ IV +R +P + +++ K+RL ++D + L + G L T+ G
Sbjct: 120 LHRIVSTVRAAVPARIAVTAKMRLGVSDTSLAIACATALAEGGAASLVVHAR--TRDHGY 177
Query: 188 --PVDINGLKEVREALSVPMVANGGVKHLND 216
P + + + +A+ VP+VANG V ++D
Sbjct: 178 RPPAHWDWIARIADAVRVPVVANGEVWTVDD 208
>UniRef50_O52532 Cluster: tRNA-dihydrouridine synthase B; n=6;
Gammaproteobacteria|Rep: tRNA-dihydrouridine synthase B
- Serratia marcescens
Length = 334
Score = 62.5 bits (145), Expect = 8e-09
Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 8/194 (4%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILAD-SFCQNSKARANEFMTTTTDFPVI--A 79
+ APM + FRTL A + + M+ ++ + K+R +D P I
Sbjct: 13 IAAPMAGITDRPFRTLCHAMGAGMAVSEMLSSNPEVWRTDKSRLR---MVHSDEPGIRSV 69
Query: 80 QFAANNRDDFVDASKL-VYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLR 138
Q A + DD A+++ V +D+N GCP K + G +LL P+++ I+ +
Sbjct: 70 QIAGCDPDDMAAAARINVASGAQLIDINMGCPAKKVNRKLAGSALLQYPDLVKRILHAVV 129
Query: 139 NVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEV 197
+ + ++ ++ + + V + Q E CG+ LT +G + + ++ V
Sbjct: 130 DAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGDAEYDSIRAV 189
Query: 198 REALSVPMVANGGV 211
++++S+P++ANG +
Sbjct: 190 KQSVSIPIIANGDI 203
>UniRef50_A3RPJ2 Cluster: TRNA-dihydrouridine synthase; n=2;
Proteobacteria|Rep: TRNA-dihydrouridine synthase -
Ralstonia solanacearum UW551
Length = 369
Score = 61.7 bits (143), Expect = 1e-08
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 102 GVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRL-LNDIKKT 160
G+DLN GCP K + G G LLS PE+++ IV +R +P +++ K+RL ++D
Sbjct: 135 GIDLNFGCPAKVVNRHGGGAMLLSTPELLHTIVSAVRAAVPANIAVTAKMRLGVSDTSLA 194
Query: 161 VILCQQLEKCGVTFLTSMEEHCTKSSG---PVDINGLKEVREALSVPMVANGGV 211
+ L + G L T+ G P + + + +A+ VP++ANG V
Sbjct: 195 IDCATALAEGGAASLVVHAR--TRDHGYRPPAHWDWIARIADAVEVPVIANGEV 246
>UniRef50_Q4PAE4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 766
Score = 61.7 bits (143), Expect = 1e-08
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 100 VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKK 159
V VDLNCGCP+ ++ G G ++LS P ++ + +K +R P +++ KIRLL +K
Sbjct: 172 VAAVDLNCGCPKPFSTHAGMGANMLSTPILLCNTLKAMRRAAPAHVAVTCKIRLLPTQEK 231
Query: 160 TVILCQQLEKCGVTFLTSMEEHC-TKSSGPVDINGLKEVRE 199
T+ L ++ + G + + HC TK P + L +RE
Sbjct: 232 TLELVDKIVRTGA--IECLTVHCRTKDMRPREPALLHRLRE 270
>UniRef50_A7EHJ6 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 513
Score = 61.7 bits (143), Expect = 1e-08
Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 77 VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
+I Q ++ + V +++V V G+D+N GCP+ ++ G G +LL P+ + I++
Sbjct: 191 LIFQIGTSDPEKAVQCARMVAADVAGIDVNAGCPKPFSTSGGMGAALLQTPDKLCAILEA 250
Query: 137 L-RNVLPN-KFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT 176
L + ++P + ISVKIRLL ++T L ++L G+T LT
Sbjct: 251 LVKEIVPEFEIGISVKIRLLETPERTEALVRKLCATGITGLT 292
>UniRef50_A6R3V4 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 461
Score = 61.7 bits (143), Expect = 1e-08
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 77 VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
++ Q + D V A+K++ V G+D+N GCP+ ++ G G +LL P+ + I+
Sbjct: 88 LVFQIGTASPDLAVQAAKIIAADVAGIDVNAGCPKPFSTTGGMGAALLQTPDRLVSILTA 147
Query: 137 LRNVL--PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT 176
L + P + ISVKIRLL D ++T L +L G+T LT
Sbjct: 148 LVQQVGTPYQIGISVKIRLLADPERTRDLVTRLCATGITGLT 189
>UniRef50_Q08111 Cluster: Probable tRNA-dihydrouridine synthase;
n=21; Alphaproteobacteria|Rep: Probable
tRNA-dihydrouridine synthase - Rhodobacter capsulatus
(Rhodopseudomonas capsulata)
Length = 324
Score = 61.7 bits (143), Expect = 1e-08
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 3/190 (1%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILA-DSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM + + FR +V F A L + M+ + + RA T P Q A
Sbjct: 17 APMAGITDLPFRRMVARFGAGLVVSEMVASGEMLTAKPSVRAKAQAELTAGLPTSVQLAG 76
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
+A+K+V + +D+N GCP K G +L+ P+ +++ + +
Sbjct: 77 REAAPMAEAAKIVADMGAEIIDINMGCPAKKVTGGLSGAALMRNPDHALRLIEAVVGAVD 136
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSM-EEHCTKSSGPVDINGLKEVREAL 201
++ +++ D + + E GV + +G D + VR A+
Sbjct: 137 LPVTLKMRLGWDEDQLNAAEIAARAEAAGVKMIVIHGRTRMQFYTGAADWRAIAAVRAAV 196
Query: 202 SVPMVANGGV 211
SVP+VANG +
Sbjct: 197 SVPVVANGDI 206
>UniRef50_Q3AZ67 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=20; Cyanobacteria|Rep: Dihydrouridine synthase
TIM-barrel protein nifR3 - Synechococcus sp. (strain
CC9902)
Length = 356
Score = 61.3 bits (142), Expect = 2e-08
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 4/196 (2%)
Query: 25 APMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
+P+ + FR LVR ++ D L FT M+ A S + + P+ Q
Sbjct: 42 SPLAGVTDKIFRGLVRRWSRDSLLFTEMVNATSL-ELGHGYGKMDDLKAEEGPIAVQLFD 100
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
+ A++ +D+N GCP + K G G L+ P + I++ + + +
Sbjct: 101 HRPHAMAHAARRAEQAGAFLIDINMGCPVRKIAKKGGGSGLIRDPNLATQILEAVVDAVS 160
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVREAL 201
++ ++ + C+QL+ G LT + G + N + EV++AL
Sbjct: 161 IPVTVKTRLGWCGSSSDPITWCRQLQNAGAQMLTLHGRTREQGFKGQANWNAIAEVKQAL 220
Query: 202 SVPMVANGGVKHLNDA 217
++P++ANG + DA
Sbjct: 221 TIPVIANGDINSPTDA 236
>UniRef50_Q2RM54 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Moorella thermoacetica ATCC 39073|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Moorella thermoacetica (strain ATCC 39073)
Length = 334
Score = 61.3 bits (142), Expect = 2e-08
Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 3/202 (1%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ APM Y+ FR L R A L +T MI A N+K PV Q
Sbjct: 17 IMAPMAGYTDRVFRLLAREAGAALTYTEMISAQGLIYNNKNTHALLDLKGEPGPVAVQLF 76
Query: 83 ANNRDDFVDASKL-VYPYVDGVDLNCGCPQKWAMKDGYGCSLLSK-PEIIYDIVKGLRNV 140
+ A+++ V +DLN GCP +K+G G +L+ P + +R
Sbjct: 77 GREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGEGSALMRDLPRAAAIVAAMVRAA 136
Query: 141 LPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVRE 199
P ++ +++ D V + + G + ++ SG D + + V+E
Sbjct: 137 GPVPVTVKMRLGWDEDSINVVEAARAVVYAGAAAVAIHGRTRSQFYSGRADWSYFRRVKE 196
Query: 200 ALSVPMVANGGVKHLNDATTYM 221
A+ VP++ NG V+ DA T +
Sbjct: 197 AVDVPVIGNGDVRTARDAVTML 218
>UniRef50_Q22A31 Cluster: TIM-barrel protein, yjbN family; n=1;
Tetrahymena thermophila SB210|Rep: TIM-barrel protein,
yjbN family - Tetrahymena thermophila SB210
Length = 480
Score = 61.3 bits (142), Expect = 2e-08
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 14 AKINKTYLKVCAPMVRYSKVHFRTLVRNFNA-DLCFTPMILADSFCQNSKARANEFMTTT 72
A IN + V APM+ + VHFR +R + +T MI + N +
Sbjct: 97 ANINYHTIAV-APMIDITDVHFRNFIRLLTRYSILYTEMIHEQAVHHNIRGPQEFLRFDP 155
Query: 73 TDFPVIAQFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIY 131
PV+ Q N+ D+ A+K+ D V+LN GCP +G L+ +PE++
Sbjct: 156 VQHPVVIQLGGNDPDNLAKAAKICEEIGYDEVNLNVGCPSDRVQSGKFGACLMKEPELVA 215
Query: 132 DIVKGLRNVLPNKFSISVKIRL 153
+I++ ++ ++VK RL
Sbjct: 216 EIMRKMKEAC--SIPVTVKCRL 235
>UniRef50_O25427 Cluster: Probable tRNA-dihydrouridine synthase;
n=9; Epsilonproteobacteria|Rep: Probable
tRNA-dihydrouridine synthase - Helicobacter pylori
(Campylobacter pylori)
Length = 328
Score = 61.3 bits (142), Expect = 2e-08
Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 6/205 (2%)
Query: 17 NKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFP 76
NK +L + AP+ Y+ + FR++V+ F D+ + M+ + S + + +
Sbjct: 5 NKKWLFL-APLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPLEDH 63
Query: 77 VIAQFAANNRDDFVDASKLV--YPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIV 134
+AQ + + +A + + +V+G+D NCGCP G G LL + ++
Sbjct: 64 FMAQISGSKESVVKEAVEKINALEHVNGIDFNCGCPAPKVANHGNGSGLLKDLNHLVKLL 123
Query: 135 KGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT--SMEEHCTKSSGPVDIN 192
K +R K + SVK+RL + K + L V ++ +D
Sbjct: 124 KTIRENTSKKIT-SVKVRLGFEKKIPKEIAHALNDAPVDYVVVHGRTRSDKYQKDKIDYE 182
Query: 193 GLKEVREALSVPMVANGGVKHLNDA 217
+ +++ L P++ANG + + A
Sbjct: 183 SIALMKKILKKPVIANGEIDSVKKA 207
>UniRef50_Q8YAB9 Cluster: Lmo0227 protein; n=55; Bacteria|Rep:
Lmo0227 protein - Listeria monocytogenes
Length = 331
Score = 60.9 bits (141), Expect = 2e-08
Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 3/198 (1%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V APM S FR V+ F A L MI + + + P+ Q
Sbjct: 14 VVAPMAGISNSAFRLTVKEFGAGLVCCEMISDKGIAYRNAKTLDMLYIDEKEKPLSLQIF 73
Query: 83 ANNRDDFVDASKLVYPYV--DGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
++ V+A+K V D +D+N GCP +K G L P +YD+V + +
Sbjct: 74 GGEKETLVEAAKFVAENTTADIIDINMGCPVNKIIKCEAGAKWLLDPNKVYDMVAAVVDA 133
Query: 141 LPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSM-EEHCTKSSGPVDINGLKEVRE 199
+ ++ ++I + + E+ G + G + + L++V+
Sbjct: 134 VDKPVTVKMRIGWDEEHVFAIENALAAERAGAAAVAMHGRTRVQMYEGSANWDVLRDVKR 193
Query: 200 ALSVPMVANGGVKHLNDA 217
L +P +ANG V+ DA
Sbjct: 194 ELKIPFMANGDVRTPEDA 211
>UniRef50_Q7XWZ9 Cluster: OSJNBa0079F16.4 protein; n=8; Oryza
sativa|Rep: OSJNBa0079F16.4 protein - Oryza sativa
(Rice)
Length = 1708
Score = 60.9 bits (141), Expect = 2e-08
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 8/150 (5%)
Query: 25 APMVRYSKVHFRTLVRNFNADL-CFTPMILADSFCQNSKARANEFMTTTTD-FPVIAQFA 82
APM+ ++ H+RTL R + +T M++A++ + K + F+ + P++ Q
Sbjct: 68 APMMDWTDNHYRTLARLISKHAWLYTEMVVAETIV-HQKDNLDRFLAFPAEQHPIVLQIG 126
Query: 83 ANNRDDFVDASKLVYPY-VDGVDLNCGCPQ-KWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
+N D+ A++L Y D ++LNCGCP K A +G L+ PE + D + +
Sbjct: 127 GSNLDNLAKATELANAYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAI--A 184
Query: 141 LPNKFSISVKIRL-LNDIKKTVILCQQLEK 169
+SVK R+ ++D LC+ ++K
Sbjct: 185 ANCNVPVSVKCRIGVDDRDSYEELCEFVDK 214
>UniRef50_Q6PEH0 Cluster: Zgc:63779; n=8; Chordata|Rep: Zgc:63779 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 660
Score = 60.5 bits (140), Expect = 3e-08
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 11/207 (5%)
Query: 17 NKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFP 76
+K YL AP+ + FR + + F AD+ M + + Q + ++
Sbjct: 315 DKLYL---APLTTCGNLPFRRVCKRFGADITCGEMAMCTNLLQGQASEWALLKRHASEDL 371
Query: 77 VIAQFAANNRDDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIV 134
Q D ++L+ VD VD+N GCP K G GC L+++ IV
Sbjct: 372 FGVQLEGCFPDTMTRCAELLNQNIDVDFVDINSGCPIDLVYKKGGGCGLMTRTSKFEQIV 431
Query: 135 KGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT----SMEEHCTKSSGPVD 190
+G+ +VL ++ ++ + + L +++K GV+ +T S E+ TK +
Sbjct: 432 RGMNSVLDVPLTVKIRTGVQQNSNIAHKLIPEMKKWGVSLITLHGRSREQRYTKLADWDY 491
Query: 191 INGLKEVREALSVPMVANGGVKHLNDA 217
IN ++ A VP+ NG + DA
Sbjct: 492 INTCAQL--AAPVPLFGNGDILSYEDA 516
>UniRef50_A4SY29 Cluster: Dihydrouridine synthase, DuS; n=1;
Polynucleobacter sp. QLW-P1DMWA-1|Rep: Dihydrouridine
synthase, DuS - Polynucleobacter sp. QLW-P1DMWA-1
Length = 347
Score = 59.3 bits (137), Expect = 7e-08
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 27 MVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAANN 85
M+ ++ H R+ R + + +T M+ + R ++ + PV+ Q +
Sbjct: 1 MMEWTDRHCRSFHRALTTEAVLYTEMVTTGALMHGDVPRHLDY--SQDQHPVVLQLGGSE 58
Query: 86 RDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNK 144
+D +++L + D +DLNCGCP + + +G L+++P+++ D VK ++N +
Sbjct: 59 PNDLARSAELAQQWGYDEIDLNCGCPSERVQRGAFGACLMAEPKLVADCVKAMQNAV--D 116
Query: 145 FSISVKIRL 153
ISVK RL
Sbjct: 117 IPISVKHRL 125
>UniRef50_A6U9Y2 Cluster: Dihydrouridine synthase DuS; n=2;
Sinorhizobium|Rep: Dihydrouridine synthase DuS -
Sinorhizobium medicae WSM419
Length = 385
Score = 58.8 bits (136), Expect = 1e-07
Identities = 35/148 (23%), Positives = 72/148 (48%), Gaps = 6/148 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM+ ++ H+R R + L +T MI+AD+ + +A+ ++ PV Q
Sbjct: 25 APMIDWTDRHYRFFARVLSRHALLYTEMIVADAVLRGDRAKL--LGHDASEHPVALQLGG 82
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
N+ +A+++ Y D +++N GCP +G L+ +P ++ D + ++ +
Sbjct: 83 NDPVKMAEAARIGEAYGYDEINMNVGCPSDRVQSGTFGACLMQEPALVADCIAAMKAAV- 141
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKC 170
+ ++VK R+ D + + + L KC
Sbjct: 142 -EIPVTVKCRIGVDDQDPEVALRDLVKC 168
>UniRef50_A4S604 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 287
Score = 58.8 bits (136), Expect = 1e-07
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 25 APMVRYSKVHFRTLVRN-FNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVI--AQF 81
AP+ + FR L + F A++ + M A + ++ D AQ
Sbjct: 7 APLTKGGNAPFRRLCASEFGAEVVVSEMAFARFLAKGARVERARVRRHEGDAGDCFGAQI 66
Query: 82 AANNRDDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
A N ++ V+A+ + D VDLNCGCP K G G +LL KP + +V+G+ +
Sbjct: 67 ATNAIEEGVNAALIASGEFGADFVDLNCGCPIHETWKRGLGAALLKKPAKLERLVEGIAS 126
Query: 140 VLPNKFSISVKIRL-LNDIKKTVILCQQLEKCGVTFLT----SMEEHCTKSSGPVDINGL 194
+ ++VKIRL ++ + + + LE G + + + E+ TK++ D + +
Sbjct: 127 RI--DVPLTVKIRLGIDSSSQARRIAEGLENAGASAVVVHGRTKEQRYTKAA---DYDVI 181
Query: 195 KEVREALSVPMVANGGVKHLNDATTYMK 222
+++ ++P++ NG V DA M+
Sbjct: 182 RDIVRERNIPIIGNGDVLTWYDARDRME 209
>UniRef50_Q54CU9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 671
Score = 58.8 bits (136), Expect = 1e-07
Identities = 42/205 (20%), Positives = 84/205 (40%), Gaps = 3/205 (1%)
Query: 15 KINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTD 74
+IN + AP+ + FR + + AD+ M L + +K+ +
Sbjct: 319 RINFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEGTKSELALLKRHPCE 378
Query: 75 FPVIAQFAANNRDDFVDASKLVYPYVDG--VDLNCGCPQKWAMKDGYGCSLLSKPEIIYD 132
Q + D V ++ + +D VD+N GCP G G +L+ +P+ +
Sbjct: 379 DKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALMERPKKVEQ 438
Query: 133 IVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDI 191
+++G+ + L +I ++I D L L + G +T + S +
Sbjct: 439 LLRGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLHGRSRAQRYSRLANW 498
Query: 192 NGLKEVREALSVPMVANGGVKHLND 216
+ +K+ E S+P++ NG + + D
Sbjct: 499 DYVKQCSEVSSIPLIGNGDIYNYQD 523
>UniRef50_A7CWF1 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Opitutaceae bacterium TAV2|Rep: Putative TIM-barrel
protein, nifR3 family - Opitutaceae bacterium TAV2
Length = 389
Score = 58.4 bits (135), Expect = 1e-07
Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 6/193 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNA-DLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
+P+ Y+ + R VR T ++ A S + SK T D P+ Q
Sbjct: 15 SPLAGYTNLPMRLTVRELGGLGWATTDLVNARSLIERSKGAMKLVETAPGDQPLAIQLFG 74
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
+ ++ DA+ + VD+N GCP K + G G +++++ +V+G+ +
Sbjct: 75 SVPEEMRDAAVICKELGAQSVDVNMGCPVKKVVGIGGGAAMMTELNKTAALVRGMVEAVG 134
Query: 143 NKFSISVKIRL-LNDIKKTV-ILCQQLEKCGV-TFLTSMEEHCTKSSGPVDINGLKEVRE 199
NK ++ K+RL +D T L + L GV SG V++ G++ V E
Sbjct: 135 NKIPVTAKMRLGWDDANITAPDLARVLADVGVAAIFVHGRTRAQGFSGTVNLAGIRAVVE 194
Query: 200 AL-SVPMVANGGV 211
A+ +P++ NG V
Sbjct: 195 AVPGLPVIGNGDV 207
>UniRef50_Q9TYN2 Cluster: Putative uncharacterized protein
Y37E11B.5; n=2; Caenorhabditis|Rep: Putative
uncharacterized protein Y37E11B.5 - Caenorhabditis
elegans
Length = 554
Score = 58.4 bits (135), Expect = 1e-07
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 22 KVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQF 81
K AP+ + FR + ++ AD+ M LA S + + + + Q
Sbjct: 206 KYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGTASEYSLLKRHPCEKIFGVQL 265
Query: 82 AANNRDDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
A D AS++V VD +D+N GCP + G GC+L S+P+ +++++ ++
Sbjct: 266 AGGFADTMAKASQIVVENFDVDFIDINMGCPIDVVNQKGGGCALPSRPQKLFEVLAATKS 325
Query: 140 VLPNKFSISVKIR 152
VL ++VKIR
Sbjct: 326 VLGGCCPLTVKIR 338
>UniRef50_Q9ZED2 Cluster: Probable tRNA-dihydrouridine synthase;
n=39; Proteobacteria|Rep: Probable tRNA-dihydrouridine
synthase - Rickettsia prowazekii
Length = 327
Score = 58.4 bits (135), Expect = 1e-07
Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 5/199 (2%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIA--Q 80
+ APM + + FR LV+ F A L + MI + + S+ ++ + D P A Q
Sbjct: 14 ILAPMSDVTDLEFRKLVKRFGAGLVVSEMIASRAMIMKSR-QSMQKCAIMHDDPTSACVQ 72
Query: 81 FAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
A D +A+K+ +DLN GCP K + G +L+ ++ I +
Sbjct: 73 LAGCEPDVIAEAAKMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAKIFEATVK 132
Query: 140 VLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSM-EEHCTKSSGPVDINGLKEVR 198
+ ++ ++I ++ + L + GV +T C SG + + ++ V+
Sbjct: 133 AVKIPVTVKMRIGWDDNTRNAPTLAKIAANSGVQMVTVHGRTRCQFYSGNANWDFIRTVK 192
Query: 199 EALSVPMVANGGVKHLNDA 217
EA+ +P++ANG + + A
Sbjct: 193 EAVKIPVIANGDITNFAKA 211
>UniRef50_Q9RRP8 Cluster: NifR3 protein; n=2; Deinococcus|Rep: NifR3
protein - Deinococcus radiodurans
Length = 406
Score = 58.0 bits (134), Expect = 2e-07
Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 13/196 (6%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPV----I 78
V APM YS R L A + MI A S+ E ++ +P
Sbjct: 95 VLAPMAGYSDAPMRQLAAEQGALWTVSEMISARGLVLGSE---QESLSLGRPYPGEQGRA 151
Query: 79 AQFAANNRDDFVDASKLVYPYVD--GVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
Q + D DA + +DLN GCP G C LL PE+ Y++V+
Sbjct: 152 VQLFGADPDVLADAVGKAEAWFAPAAIDLNLGCPVPKVRGKGGAC-LLQTPEVAYELVRA 210
Query: 137 LRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLK 195
+R +S KIRL D ++V + Q LE G +T + +G D + +
Sbjct: 211 MRQA--TGLDVSAKIRLGWDENRSVEIAQGLEAAGAAVVTVHGRTSAQRYTGNADWDAIG 268
Query: 196 EVREALSVPMVANGGV 211
V +A+ +P++ +G V
Sbjct: 269 RVAQAVRIPVIGSGDV 284
>UniRef50_Q3IKP0 Cluster: TRNA-dihydrouridine synthase C; n=5;
Alteromonadales|Rep: TRNA-dihydrouridine synthase C -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 326
Score = 58.0 bits (134), Expect = 2e-07
Identities = 58/213 (27%), Positives = 86/213 (40%), Gaps = 16/213 (7%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNA-DLCFTPMILADSFCQNSKA------RANEFMTTTTDF 75
V APM R L+ N DLC T + C K + T+
Sbjct: 4 VLAPMEGVVDFKMRQLLTNVGGFDLCVTEFVRVVDACLPDKVFYRYCPELSNNGLTSAGT 63
Query: 76 PVIAQFAANNRDDFVD-ASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIV 134
PV Q + A K + G+DLN GCP K K G LL PE +Y+I+
Sbjct: 64 PVRIQLLGQVAGALAENAVKAISLGSHGIDLNFGCPAKTVNKSKGGAVLLKDPEHMYEII 123
Query: 135 KGLRNVLPNKFSISVKIRL-LNDIKKTVILCQQLEKCGVTFLTSMEEHC-TKSSG---PV 189
K +R+ + +K +S KIRL +D + + + G +S+ H TK G P
Sbjct: 124 KAVRDAVDSKHQVSAKIRLGFDDDSNSQEIVDAVVSAGA---SSIAIHARTKRDGYNPPA 180
Query: 190 DINGLKEVREALSVPMVANGGVKHLNDATTYMK 222
+ + + + +VANG + + DA K
Sbjct: 181 YWEKIPPLIKDKDIAVVANGEIWQVADAMLCQK 213
>UniRef50_A1VHK2 Cluster: Dihydrouridine synthase, DuS; n=4;
Desulfovibrionaceae|Rep: Dihydrouridine synthase, DuS -
Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Length = 449
Score = 58.0 bits (134), Expect = 2e-07
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 7/190 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ YS + FR L R A +C T M+ A S + TT D P++ Q
Sbjct: 37 APLAGYSDLSFRLLCRKAGAAVCCTEMVSAKGLIYYSPGTRDLLATTPEDAPLVVQLFGC 96
Query: 85 NRDDFVDASK-LVYPYVDGVDLNCGCPQKWAMKDGYGCSLL-SKPEIIYDIVKGLRNVLP 142
+ D V A + L+ DLN GC +K G G ++L P+ + LR
Sbjct: 97 DPDIMVRAMEPLLEQGFRWFDLNMGCSVPKVVKTGCGAAMLRDVPQALAVARAMLRTAGA 156
Query: 143 NKFSISVKIRLLNDIKKTV--ILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVRE 199
+ + K RL D+ + V L + L G ++T + + SG + L E+
Sbjct: 157 GR--VGFKFRLGWDVGQEVWADLGRALADLGAGWVTLHPRYARQGFSGEARWSTLGELVR 214
Query: 200 ALSVPMVANG 209
A+SVP++A+G
Sbjct: 215 AVSVPVIASG 224
>UniRef50_Q5SMC7 Cluster: TRNA-dihydrouridine synthase; n=2; Thermus
thermophilus|Rep: TRNA-dihydrouridine synthase - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 342
Score = 57.6 bits (133), Expect = 2e-07
Identities = 52/213 (24%), Positives = 103/213 (48%), Gaps = 19/213 (8%)
Query: 25 APMVRYSKVHFRTLVRNFNADL-CFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APMV + HFR LVR + + +T M + + + ++ R F + P+ Q A
Sbjct: 9 APMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPE--EHPIALQLAG 66
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
++ +A+++ + D ++LN GCP + A + GYG LL + +I+K + +
Sbjct: 67 SDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAV- 125
Query: 143 NKFSISVKIRLLNDIKKTVI-LCQQLE---KCGV--------TFLTSMEEHCTKSSGPVD 190
+ ++VK+RL + K+T L Q +E + GV + L ++ + P+
Sbjct: 126 -RVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLR 184
Query: 191 INGLKEVR-EALSVPMVANGGVKHLNDATTYMK 222
+ + ++ + + V NGG++ L +A ++K
Sbjct: 185 HDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK 217
>UniRef50_Q5LQV9 Cluster: TRNA-dihydrouridine synthase A; n=46;
Bacteria|Rep: TRNA-dihydrouridine synthase A -
Silicibacter pomeroyi
Length = 344
Score = 57.6 bits (133), Expect = 2e-07
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 24 CAPMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
CAPM+ ++ H R L R + L +T M+ A + + E+ + + PV Q
Sbjct: 15 CAPMMDWTDRHCRYLHRLLSRQTLLYTEMVTAPALVRGGALHLLEY--SVEEHPVALQLG 72
Query: 83 ANNRDDFVDASKL-VYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
++ ++ A++L D ++LNCGCP +G L+ P ++ D V +R +
Sbjct: 73 GSDPEELAQAARLGAEAGYDEINLNCGCPSDRVQSGTFGAVLMKHPGLVADCVTAMREAV 132
Query: 142 PNKFSISVKIRLLNDIKKTVI 162
+ ++ +I + + +TV+
Sbjct: 133 DVEVTVKCRIGVDDQDPETVL 153
>UniRef50_Q4FQ57 Cluster: Possible tRNA-dihydrouridine synthase;
n=5; Moraxellaceae|Rep: Possible tRNA-dihydrouridine
synthase - Psychrobacter arcticum
Length = 350
Score = 57.6 bits (133), Expect = 2e-07
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 103 VDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRL-LNDIKKTV 161
+D+N GCP K G LL +PE++YDI+ +R +P +S KIRL D +
Sbjct: 127 IDINFGCPAKTVNSHRGGSVLLDEPEVMYDIISAVRQAVPANIPVSAKIRLGYTDTSRMD 186
Query: 162 ILCQQLEKCGVTFLTSMEEHCTKSSGPVDINGLKEVREALSVPMVANGGVKHLNDATTYM 221
+ + G +LT T+ P + +L +P++ANG + + A M
Sbjct: 187 DIRGAIAASGADWLTIHARTKTQGYKPPAYWDKIQAFNSLKIPVIANGEIWNSEHAQNCM 246
>UniRef50_Q1QZQ6 Cluster: Dihydrouridine synthase, DuS; n=1;
Chromohalobacter salexigens DSM 3043|Rep: Dihydrouridine
synthase, DuS - Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB13768)
Length = 340
Score = 57.6 bits (133), Expect = 2e-07
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 103 VDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL-PNKFSISVKIRLLNDIKKTV 161
VDLN GCP K + G SLL +PE ++ +V+ + L P +++ KIRL D K
Sbjct: 99 VDLNFGCPAKTVNRHDGGASLLRQPERVHTVVRAVAEALAPLGIAVTAKIRLGFDDKHVA 158
Query: 162 ILCQQLEKCGVTFLTSMEEHCTKSSG---PVDINGLKEVREALSVPMVANGGVKHLND 216
+ C + + G + T+ G P + ++ LS+P++ANG + L D
Sbjct: 159 LACAEAAESGGAAHLVVHAR-TRREGYRPPAHWEWIGRIQARLSIPVIANGDIWTLED 215
>UniRef50_A6W1E8 Cluster: Dihydrouridine synthase DuS; n=1;
Marinomonas sp. MWYL1|Rep: Dihydrouridine synthase DuS -
Marinomonas sp. MWYL1
Length = 335
Score = 57.6 bits (133), Expect = 2e-07
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 71 TTTDFPVIAQFAANNRDDFVDAS-KLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEI 129
TT + PV Q +N + +++ +D+N GCP K G G LL P+
Sbjct: 77 TTHNHPVHTQLLGSNAELMAESALNATKAGAKHIDVNFGCPAKRVNGHGGGSVLLQTPDA 136
Query: 130 IYDIVKGLRNVLPNKFSISVKIRL-LNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSG- 187
+YDI+ +R+ LP+ +S KIRL D +E GV LT TK G
Sbjct: 137 LYDIMSAIRDTLPSDIPVSAKIRLGFEDEALLFDNVAAIEAAGVGTLTIHGR--TKKDGY 194
Query: 188 --PVDINGLKEVREALSVPMVANGGV 211
P + E++ + +VANG +
Sbjct: 195 KPPARWEKIGEIQAKTKMTVVANGDI 220
>UniRef50_Q96G46 Cluster: tRNA-dihydrouridine synthase 3-like; n=12;
Eutheria|Rep: tRNA-dihydrouridine synthase 3-like - Homo
sapiens (Human)
Length = 650
Score = 57.6 bits (133), Expect = 2e-07
Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 10/205 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ + FR + + F AD+ M + + Q + + Q
Sbjct: 310 APLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGA 369
Query: 85 NRDDFVDASKLVYPYV--DGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
D ++L+ V D VD+N GCP K G GC+L+++ IV+G+ VL
Sbjct: 370 FPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLD 429
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT----SMEEHCTKSSGPVDINGLKE-V 197
++ ++ + + L +L GV +T S E+ TK + D ++E V
Sbjct: 430 VPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLA---DWQYIEECV 486
Query: 198 REALSVPMVANGGVKHLNDATTYMK 222
+ A +P+ NG + DA M+
Sbjct: 487 QAASPMPLFGNGDILSFEDANRAMQ 511
>UniRef50_Q8GQD1 Cluster: NifR; n=5; Leptospira|Rep: NifR -
Leptospira interrogans
Length = 329
Score = 57.2 bits (132), Expect = 3e-07
Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 2/195 (1%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
+PM S R + R F A +T + D + F + P+ Q N
Sbjct: 16 SPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKALKMFRYKLEERPITFQIFGN 75
Query: 85 NRDDFVDASKLVYPYV-DGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
+ +A++++ D +DLN GC + G G LL +P + I++ ++ +
Sbjct: 76 RLEIIAEAAEIIQELKPDIIDLNMGCSTRKVSLRGAGAGLLRRPLLAGKIIEAIKKRVNI 135
Query: 144 KFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVREALS 202
+ ++I + + + + + LE+ GV LT + +G D + + E++
Sbjct: 136 PVTAKIRIGWDSTSRNYLEVSKILEESGVDALTVHGRTKEMAYTGFADWDAIGEIKVNRK 195
Query: 203 VPMVANGGVKHLNDA 217
+P+ NG +K +A
Sbjct: 196 IPIFGNGDIKSFQEA 210
>UniRef50_A3JG66 Cluster: Putative uncharacterized protein; n=3;
Gammaproteobacteria|Rep: Putative uncharacterized
protein - Marinobacter sp. ELB17
Length = 335
Score = 57.2 bits (132), Expect = 3e-07
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 103 VDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVI 162
VD+N GCP K K GC L+ +PE++++I +R +P ++ K+RL D + +
Sbjct: 92 VDINFGCPAKTVNKHKGGCVLMREPELMHEITAAVRQAVPADILVTAKMRLGYDDRSMGV 151
Query: 163 LC-QQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVREALSVPMVANGGV 211
C Q L+ G + T P + + REA+ ++ANG +
Sbjct: 152 ACAQALDAAGAGEIVIHARSKTDGYKPPAYWEEIAKAREAVKAKVIANGDI 202
>UniRef50_A5D5Q0 Cluster: TRNA-dihydrouridine synthase; n=5;
Firmicutes|Rep: TRNA-dihydrouridine synthase -
Pelotomaculum thermopropionicum SI
Length = 324
Score = 56.8 bits (131), Expect = 4e-07
Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 6/204 (2%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ APM + FR L R F L T M+ + + + PV Q
Sbjct: 13 IAAPMAGITDKAFRILAREFGCGLVCTEMVSDQALLHGNPKTCSLLDVAGEAGPVSVQIF 72
Query: 83 ANNRDDFVDASKLVYPYVDGV-DLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
+N +A+ + G+ D+N GCP +K+G G +L+ +PE IV+ + V
Sbjct: 73 GSNAACMAEAAGIAESRGAGIIDINMGCPTPKIVKNGEGAALMREPEKAARIVRAV--VE 130
Query: 142 PNKFSISVKIR--LLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVR 198
K ++VK+R ++ V L + + G +T +G D + V+
Sbjct: 131 RVKVPVTVKMRKGWDDNSPNAVELARLAAEAGAAAVTVHGRTRSQLYAGKADWEIIAAVK 190
Query: 199 EALSVPMVANGGVKHLNDATTYMK 222
A+ VP++ NG V DA ++
Sbjct: 191 RAVDVPVIGNGDVWTPQDALAMLE 214
>UniRef50_Q9LY64 Cluster: Putative uncharacterized protein
MAA21_140; n=4; Arabidopsis thaliana|Rep: Putative
uncharacterized protein MAA21_140 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 456
Score = 56.8 bits (131), Expect = 4e-07
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADL-CFTPMILADSFCQNSKARANEFMT-TTTDFPVIAQFA 82
APM+ ++ H+RTL R +T MI A++ + + + F+ + P++ Q
Sbjct: 42 APMMDWTDNHYRTLARLITKHAWLYTEMIAAETLV-HQQTNLDRFLAFSPQQHPIVLQLG 100
Query: 83 ANNRDDFVDASKLVYPY-VDGVDLNCGCPQ-KWAMKDGYGCSLLSKPEIIY 131
+N ++ A+KL Y D ++LNCGCP K A +G SL+ KP++ Y
Sbjct: 101 GSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKVRY 151
>UniRef50_Q9Z7D8 Cluster: Predicted oxidoreductase; n=7;
Chlamydiaceae|Rep: Predicted oxidoreductase - Chlamydia
pneumoniae (Chlamydophila pneumoniae)
Length = 335
Score = 56.0 bits (129), Expect = 7e-07
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDF-PVIAQF 81
V AP+ +S +R + + L F M+ + + R ++ + + P+ AQ
Sbjct: 17 VYAPLAGFSDYPYRCMSALYQPGLMFCEMVKVEGILY-APERTSKLLDYNENMRPIGAQL 75
Query: 82 AANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
+N + +A+K++ D +DLNCGCP KDG G LL PE+I I+ + N
Sbjct: 76 CGSNPETSGEAAKILEGLGFDLIDLNCGCPTDKITKDGSGSGLLKTPELIGRILDKIINS 135
Query: 141 LPNKFSISVKIR 152
+ ++VKIR
Sbjct: 136 V--SIPVTVKIR 145
>UniRef50_Q5LRN6 Cluster: TRNA-dihydrouridine synthase, putative;
n=10; Rhodobacterales|Rep: TRNA-dihydrouridine synthase,
putative - Silicibacter pomeroyi
Length = 327
Score = 56.0 bits (129), Expect = 7e-07
Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 6/193 (3%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIA-QF 81
+ APM + FR LV F A + + M+ + Q +K E + D A Q
Sbjct: 15 ILAPMAGITDRPFRDLVMEFGAGMVVSEMVASQEMVQ-AKPGVRERAELSADVENTAVQL 73
Query: 82 AANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGY-GCSLLSKPEIIYDIVKGLRN 139
A + +A++ V +D+N GCP K + +GY G +LL P+ +++ +
Sbjct: 74 AGRDTHWIAEAARQVADRGARVIDINMGCPAK-KVTNGYSGSALLKTPDHALRLIEAVVA 132
Query: 140 VLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSM-EEHCTKSSGPVDINGLKEVR 198
+ ++ ++ + + + ++ + GV +T C G D + VR
Sbjct: 133 AVDVPVTLKTRLGWDDTLMNAPDVARRAAEAGVRMVTIHGRTRCQFYKGRADWAAIAAVR 192
Query: 199 EALSVPMVANGGV 211
EA+ VP++ANG +
Sbjct: 193 EAVDVPLIANGDI 205
>UniRef50_Q4QEF9 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 595
Score = 56.0 bits (129), Expect = 7e-07
Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 10/201 (4%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V AP+ + FR + ++F AD+ + M + + + K+ + ++ Q A
Sbjct: 238 VLAPLTTVGNLPFRRICKSFGADVTLSEMAVVFNLNRLQKSEWSLLRRHESEDIFGIQLA 297
Query: 83 ANNRDD---FVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
+ + F A + D +D+NCGCP + +K G GC L + E + D+V+ L
Sbjct: 298 VSRPQEAATFAQALEASGFSYDFLDINCGCPVEKIVKSGCGCGLWQRTERLRDVVESLAI 357
Query: 140 VLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT----SMEEHCTKSSGPVDINGLK 195
+I +I L DI + G +T S ++ TK + + + +
Sbjct: 358 YQSRPVAIKCRIGLDEDIPTLHQQIHRYSAWGAAAVTVHGRSRKQRYTKFA---NWDYVD 414
Query: 196 EVREALSVPMVANGGVKHLND 216
+ + S+P++ NG + L D
Sbjct: 415 QCAQLTSLPVIGNGDIMSLED 435
>UniRef50_A4EC62 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 347
Score = 55.6 bits (128), Expect = 9e-07
Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 7/224 (3%)
Query: 4 ICDIMEKFADAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKA 63
+C+ + A + +L APM + +R + R A+L ++ M+ S
Sbjct: 3 LCEYSTRLLGAYAEQPFLM--APMAGVTDPAYRIMCRRRGANLAYSEMVSVAGLAYASNK 60
Query: 64 RANEFMTTTTDFPVIAQFAANNRDDFVDASKLVYPYVDG----VDLNCGCPQKWAMKDGY 119
+ + + Q + + F A V V +D+N CP + + G
Sbjct: 61 TWRLVLPADEEQQICVQLFGSKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGE 120
Query: 120 GCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSME 179
G +L+ P++ IV+ ++ ++ + + Q LE G +
Sbjct: 121 GSALMRTPDLAEKIVEAAVGAAHVPVTVKIRKGFYAEDRNAATFAQMLEGAGAAAVAVHG 180
Query: 180 EHCTK-SSGPVDINGLKEVREALSVPMVANGGVKHLNDATTYMK 222
T+ +G D + + EV +A+ +P++ +G V DA +++
Sbjct: 181 RCATQLYTGQADWSVVDEVADAVEIPVIGSGDVFSAEDAAEHLQ 224
>UniRef50_Q251N6 Cluster: Putative uncharacterized protein; n=2;
Desulfitobacterium hafniense|Rep: Putative
uncharacterized protein - Desulfitobacterium hafniense
(strain Y51)
Length = 326
Score = 55.2 bits (127), Expect = 1e-06
Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 10/204 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDF-PVIAQFAA 83
APM + FR VR+ +T MI +D +R E + + + P I Q
Sbjct: 20 APMAGVTDKAFRETVRSVGGLHVWTEMI-SDKALTYMNSRTLEMLDLSGEASPRIVQLFG 78
Query: 84 NNRDDFVDASKL-VYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
+ + A+ L V + +D+N GCP +K+G G +LL + I + + +
Sbjct: 79 SEPEVMAKAAALAVERDAEIIDINMGCPTPKIVKNGEGSALLQDLPLAQRIAEAVVKAV- 137
Query: 143 NKFSISVKIRLLNDIKKTVI--LCQQLEKCGVTFLTSMEEHCTKS--SGPVDINGLKEVR 198
+ ++VK+RL ++ V L +++E GV + S+ + +G + +G+K+V+
Sbjct: 138 -EVPVTVKMRLGWTAERIVAPELAKRVEAVGVQ-MVSVHGRTREQFYAGTANRDGIKKVK 195
Query: 199 EALSVPMVANGGVKHLNDATTYMK 222
+S+P++ANG + +A T ++
Sbjct: 196 GGVSIPVIANGDIFSPQEAKTVLE 219
>UniRef50_Q55724 Cluster: Probable tRNA-dihydrouridine synthase 1;
n=15; Cyanobacteria|Rep: Probable tRNA-dihydrouridine
synthase 1 - Synechocystis sp. (strain PCC 6803)
Length = 355
Score = 55.2 bits (127), Expect = 1e-06
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 10/193 (5%)
Query: 25 APMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
+P+ + + FR LVR + + +T M+ A + + + P+ Q
Sbjct: 47 SPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEI-HHLRTLPQVMEIDPRENPISIQLF- 104
Query: 84 NNRDDFVD--ASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
+ R DF+ A K V VD+N GCP K G G SLL +P + IVK + V
Sbjct: 105 DCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQPAVAEAIVKTV--VA 162
Query: 142 PNKFSISVKIRL-LNDIKKTVI-LCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVR 198
++VK RL +D + ++ Q+L+ G LT +G + +V+
Sbjct: 163 AVDVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTRAQGYNGRARWQWIAKVK 222
Query: 199 EALSVPMVANGGV 211
+AL++P++ANG +
Sbjct: 223 QALTIPVIANGDI 235
>UniRef50_Q1VN28 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Psychroflexus torquis ATCC 700755|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Psychroflexus torquis ATCC 700755
Length = 338
Score = 54.8 bits (126), Expect = 2e-06
Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 5/190 (2%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM + + +R L + AD T A + + + T + P I Q
Sbjct: 17 APMAGVTDLAYRLLAKECGADFTVTEFTAASGLTRKNTNSWLKVETDPREKPFIPQIFGG 76
Query: 85 NRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNK 144
+ + ++ D +D+N GCP ++ G +LL P+ + +V+ R +
Sbjct: 77 DISEMAKTVGMLEDRSDVIDINFGCPAPKVCRNDAGAALLRDPDKVVSMVR--RCIESTN 134
Query: 145 FSISVKIRL-LNDIKKTVI-LCQQLEKCGVTFLTSMEEHC-TKSSGPVDINGLKEVREAL 201
I+VK+RL T + + ++L GV + + SG D + +KE+ ++
Sbjct: 135 VPITVKMRLGTGSGPNTALEISKRLADEGVMRICVHGRTLRQRYSGIADWDQIKEISNSV 194
Query: 202 SVPMVANGGV 211
+P++ANG V
Sbjct: 195 DIPVIANGDV 204
>UniRef50_Q7R9R0 Cluster: Uncharacterized protein family UPF0034,
putative; n=7; Plasmodium|Rep: Uncharacterized protein
family UPF0034, putative - Plasmodium yoelii yoelii
Length = 531
Score = 54.8 bits (126), Expect = 2e-06
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNADL-CFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM+ + HFR LVR + + +T MI+ ++ N + P++ Q
Sbjct: 157 APMINVTNRHFRALVRIISKKVQLWTEMIVDNTLLYNINNLEEHLGFNKNEHPIVCQLGG 216
Query: 84 NNRDDFVDASKLV-YPYVDGVDLNCGCPQ-KWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
++ +A+ LV D +++N GCP K A K +G L+ P+++ +IV ++ +
Sbjct: 217 SDPTSLSEAAILVEQAGYDEININVGCPSTKVANKGAFGAYLMKNPQLVKNIVYEIKKKV 276
Query: 142 PNKFSISVKIR 152
+ ++VKIR
Sbjct: 277 --QIPVTVKIR 285
>UniRef50_Q7R684 Cluster: GLP_574_116690_118078; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_574_116690_118078 - Giardia
lamblia ATCC 50803
Length = 462
Score = 54.4 bits (125), Expect = 2e-06
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 76 PVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPE-IIYDIV 134
P++ Q N DD ++ P+ G+DLN GC ++A+ G G L+ K E +I +
Sbjct: 97 PLVVQLTVNEYDDVDKICSILAPWCVGIDLNLGCGAQFAVSGGRGQRLVDKAENVIARFL 156
Query: 135 KGLRNVLPN---KFSISVKIRLLNDIKKTVILCQQLEKCGV 172
K L+ + + + S S+K RLL +++TV K GV
Sbjct: 157 KALQQIEDSGGRRISFSIKQRLLGSVEETVNKMCAFYKLGV 197
>UniRef50_Q21L63 Cluster: Dihydrouridine synthase, DuS; n=1;
Saccharophagus degradans 2-40|Rep: Dihydrouridine
synthase, DuS - Saccharophagus degradans (strain 2-40 /
ATCC 43961 / DSM 17024)
Length = 318
Score = 54.0 bits (124), Expect = 3e-06
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 103 VDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVI 162
+DLN GCP K + G LL + + ++DIV +R P ++ KIR L + +
Sbjct: 97 IDLNFGCPAKTVNRHKGGACLLDETDTVFDIVNAVRKATPASTPVTAKIR-LGYLNRDSY 155
Query: 163 L--CQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVREALSVPMVANGGVKHLND 216
L + +E G L T P + + ++R+ LS+P+VANG + L D
Sbjct: 156 LRNAKAIEAAGANELCVHARSKTDGYQPPAYWHYIGDIRDNLSIPVVANGEIWSLED 212
>UniRef50_A7DPL5 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Candidatus Nitrosopumilus maritimus SCM1|Rep:
Putative TIM-barrel protein, nifR3 family - Candidatus
Nitrosopumilus maritimus SCM1
Length = 320
Score = 54.0 bits (124), Expect = 3e-06
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 15/205 (7%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDF--------P 76
APM S R + A L T S + + E M T +F P
Sbjct: 12 APMAGVSDPALRLQCKKMGAGLVVTEFTSIHSIIAKEE-QLKENMKTIQEFIEFSEQERP 70
Query: 77 VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
+ Q ++ A+ +V PY D +D N GCP + G +LL + + I +
Sbjct: 71 ISVQLFGSDLYALEKAATIVEPYFDIIDYNMGCPAPHITQQMAGGALLQEVNLTQQIFET 130
Query: 137 LRNVLPNKFSISVKIRL-LNDIKKTVI--LCQQLEKCGVTFLTSMEEHCTKS-SGPVDIN 192
L N + K +++KIR + D K + + + E G+ +T ++ SG D
Sbjct: 131 LVNAV--KKPVTLKIRSGVTDASKFLFRDIAEIAEDQGIQMITFHPRTVSQGYSGSADWK 188
Query: 193 GLKEVREALSVPMVANGGVKHLNDA 217
+KE++E ++P+V NG + DA
Sbjct: 189 LIKELKEISNIPVVGNGDITTPEDA 213
>UniRef50_UPI00015B6197 Cluster: PREDICTED: similar to CG10463-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
CG10463-PA - Nasonia vitripennis
Length = 584
Score = 53.6 bits (123), Expect = 4e-06
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 8/198 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ + FR + + F AD+ M LA + + ++ Q A N
Sbjct: 295 APLTTVGNLPFRRICKEFGADITCGEMALAPRLLKGVREEWALVKRHESEDLFGVQIAGN 354
Query: 85 NRDDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
N +L+ VD VDLN GCP K G GC +L++ I+ +VK VL
Sbjct: 355 NPGVLTRCCQLLNDETEVDFVDLNVGCPIDLVYKQGGGCGMLNRLNILESVVKSATEVLD 414
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT----SMEEHCTKSSGPVDINGLKEVR 198
F++ + + D L + + G + + S E+ TK + I +V
Sbjct: 415 IPFTVKTRTGVYADKPIAHKLMSKFKDWGASMINIHGRSREQRYTKLADWDYIEKCAQV- 473
Query: 199 EALSVPMVANGGVKHLND 216
A +P+ G + +D
Sbjct: 474 -ASPIPVYGTGDILSWDD 490
>UniRef50_Q0VPD7 Cluster: TIM-barrel protein, yjbN family; n=4;
Bacteria|Rep: TIM-barrel protein, yjbN family -
Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM
11573)
Length = 348
Score = 53.6 bits (123), Expect = 4e-06
Identities = 49/213 (23%), Positives = 97/213 (45%), Gaps = 20/213 (9%)
Query: 25 APMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM+ ++ +R L R L +T M++A + + R +F + PV Q
Sbjct: 37 APMMDWTTRDYRFLARLITRHTLLYTEMVVAQAILHGDRDRFLDF--NDEEHPVALQLGG 94
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
++ A+++ Y D ++LN GCP + G L+++PE++ V+ ++ +
Sbjct: 95 SDPQQLAQATRIAGDYGYDEINLNVGCPSDRVQQGKIGAILMAEPELVARCVEAMQAEV- 153
Query: 143 NKFSISVKIRL-LNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS--SG----------PV 189
++VK R+ ++D L + +++ + TS+ H K+ SG P+
Sbjct: 154 -TVPVTVKTRIGIDDQDDYDFLYRFVDRMEASGCTSLTIHARKAILSGLSPKENRDIPPL 212
Query: 190 DINGLKEVREAL-SVPMVANGGVKHLNDATTYM 221
++ A + ++ NGGVK LN+ +M
Sbjct: 213 IYQRAYAIKHAFPHIEIILNGGVKTLNEVHEHM 245
>UniRef50_Q91XI1 Cluster: tRNA-dihydrouridine synthase 3-like; n=7;
Euteleostomi|Rep: tRNA-dihydrouridine synthase 3-like -
Mus musculus (Mouse)
Length = 637
Score = 53.6 bits (123), Expect = 4e-06
Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 8/204 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ + FR + + F AD+ M + + Q + + Q
Sbjct: 297 APLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHPCEDIFGVQLEGA 356
Query: 85 NRDDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
D ++L+ VD VD+N GCP K G GC+L+++ IV+G+ VL
Sbjct: 357 FPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIVRGVNGVLD 416
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT----SMEEHCTKSSGPVDINGLKEVR 198
++ ++ + + L +L GV +T S E+ T+ + I +V
Sbjct: 417 VPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTLHGRSREQRYTRLADWPYIEQCAKV- 475
Query: 199 EALSVPMVANGGVKHLNDATTYMK 222
A +P+ NG + DA M+
Sbjct: 476 -ASPMPLFGNGDILSFEDANCAMQ 498
>UniRef50_A4RQU5 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 608
Score = 53.2 bits (122), Expect = 5e-06
Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 9/211 (4%)
Query: 17 NKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFP 76
+K YL AP+ + FR + + AD+ M L S Q + ++
Sbjct: 247 DKLYL---APLTTVGNLPFRRVCKTLGADITCGEMALCTSLLQGLPSEWALLRRHKSEDI 303
Query: 77 VIAQFAANNRDDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIV 134
Q D +L+ VD +D+N GCP + GYG +L KP+ + ++
Sbjct: 304 FGVQICGGYPDSVTRCCQLLEDTIDVDFIDINMGCPIDSVCQKGYGSMMLEKPKKMETVI 363
Query: 135 KGLRNVLPNKFSISVKIRLLNDIKKTV--ILCQQLEKCGVTFLT-SMEEHCTKSSGPVDI 191
+ L K S++ K R+ K V ++ + G +T + D
Sbjct: 364 RAASAAL-GKCSLTFKTRMAYTDKSRVAHTFAPKVAEWGAAAMTLHGRTRAQRYRSVADW 422
Query: 192 NGLKEVREALSVPMVANGGVKHLNDATTYMK 222
K +E+ SVP++ NG V D T+++
Sbjct: 423 EYTKLTKESSSVPLIGNGDVYMQKDYYTHLE 453
>UniRef50_Q8YMN5 Cluster: Transcriptional regulator; n=5;
Bacteria|Rep: Transcriptional regulator - Anabaena sp.
(strain PCC 7120)
Length = 349
Score = 52.8 bits (121), Expect = 6e-06
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 8/206 (3%)
Query: 21 LKVCAPMVRYSKVHFRTLVRNFNA-DLCFTPMILADSFCQNSKARANEFMTTTTDFPVIA 79
L APM + + F ++ ++ + D FT + + ++ + T PV A
Sbjct: 26 LTALAPMQDVTNLWFMKVIAHYGSPDYFFTEYFRVNDTSRLNRGILSAITENDTGRPVFA 85
Query: 80 QFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLR 138
Q + D V +K + Y + GVDLN GCP + G LL P + I++ LR
Sbjct: 86 QMIGESIPDLVRTAKELCGYNIAGVDLNMGCPAPRIYRKNVGGGLLLSPAKVEQILEELR 145
Query: 139 NVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS--SGPVDINGLKE 196
+ N ++VK+R+ + T + L S+ K G V + + E
Sbjct: 146 QAV-NDRPLTVKMRVGFENTDTFYEILDIVNRHNIDLLSLHGRTVKDMYHGAVKYDLIAE 204
Query: 197 VREALSVPMVANGGVKHLNDATTYMK 222
+ P++ANG +++ ATT ++
Sbjct: 205 AVRRVDCPVLANG---NIHSATTALE 227
>UniRef50_Q6MAU6 Cluster: Putative uncharacterized protein yohI;
n=1; Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein yohI - Protochlamydia
amoebophila (strain UWE25)
Length = 326
Score = 52.8 bits (121), Expect = 6e-06
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 65 ANEFMTTTT-DFPVIAQFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCS 122
AN + T P AQ ++ + + ++ V +DLNCGCP G G S
Sbjct: 57 ANRYEANETFPIPQAAQLMGSDPELMAEMARAVERRGAQRIDLNCGCPSNTVTGRGAGSS 116
Query: 123 LLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQL---EKCGVTFLTSME 179
LL +P+ +Y + K + + ++ V +L + T + L + G+ +LT
Sbjct: 117 LLKEPDHLYKVAKSMVEAV----NVPVTAKLRSGFTDTSLFHDNLLAAQASGIKYLTLHP 172
Query: 180 EHCTKSSG-PVDINGLKEVREALSVPMVANGGVKHLNDATTYMK 222
G P + + ++ L +P+V NG + + DA +K
Sbjct: 173 RTKVDGYGPPAKWELIAQAKQLLKIPVVGNGDILTVQDALNMLK 216
>UniRef50_Q4FLD8 Cluster: Putative uncharacterized protein; n=2;
Candidatus Pelagibacter ubique|Rep: Putative
uncharacterized protein - Pelagibacter ubique
Length = 330
Score = 52.8 bits (121), Expect = 6e-06
Identities = 31/131 (23%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM+ + H R +R + + L ++ M+++++ + K + EF + P+ Q
Sbjct: 8 APMMDCTDRHERFFLRLISKNTLLYSEMVVSEAIHRGDKKKLLEF--NINEKPIALQIGG 65
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
++ +A+K+ + D ++LN GCP K K+ +G L+ +P ++ D + +++V
Sbjct: 66 SSPTLLAEATKVGEDFGYDEINLNLGCPSKKVEKNKFGACLMKEPNLVADCLSKMQSV-- 123
Query: 143 NKFSISVKIRL 153
K +++K R+
Sbjct: 124 TKLPVTIKTRI 134
>UniRef50_Q30WR3 Cluster: Dihydrouridine synthase family protein;
n=3; Desulfovibrio|Rep: Dihydrouridine synthase family
protein - Desulfovibrio desulfuricans (strain G20)
Length = 376
Score = 52.8 bits (121), Expect = 6e-06
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 6/203 (2%)
Query: 25 APMVRYSKVHFRTLVRNFNA-DLCFTPMILADSFCQNSKARANEFMTTTTDFPVIA--QF 81
APM + +R ++ +F L FT M A + + AR+ F + P + F
Sbjct: 62 APMAGLGHIAYRQVLESFGGCGLVFTGMCSARAVPTENPARSPVFSWRPEELPALVCQLF 121
Query: 82 AANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
A+ +D A ++ GVD+N GC +K G G LL PE +V +R +
Sbjct: 122 GADPQDMAAAARRVESEGFFGVDINMGCSVAPIVKKGCGADLLRDPERAVRMVDAVRRAV 181
Query: 142 PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHC--TKSSGPVDINGLKEVRE 199
+ ++ D + V L ++L+ G L ++ P + + V++
Sbjct: 182 SVPVFVKMRTGWSPDPEPAVNLARRLQDAGADALVFHPRVAPDRRTHRPRTAH-IGLVKD 240
Query: 200 ALSVPMVANGGVKHLNDATTYMK 222
A+ +P++ NG V D ++
Sbjct: 241 AVDIPVIGNGDVFDAADCAAMLE 263
>UniRef50_A6NW05 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 307
Score = 52.8 bits (121), Expect = 6e-06
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 6/190 (3%)
Query: 27 MVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAANNR 86
M + + FRT+ R A T M+ A + C K + P AQ ++
Sbjct: 1 MAGVTDMAFRTICRELGAGYTITEMVSAKALCYQDKKSIPLLKLGEGEHPCAAQIFGSDE 60
Query: 87 DDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNK 144
+A+ + D +D+N GCP G G L+ + + + + +
Sbjct: 61 KCMEEAAAIAGEVSGADIIDINMGCPVPKVANSGDGSGLMRDVDKAVRVAEAVVRGAGER 120
Query: 145 FSISVKIRLLNDIKKT--VILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVREAL 201
++VK RL D V + +E GV+ + T+ +G + + ++EV++A+
Sbjct: 121 -PVTVKFRLGWDKGSINCVEFAKAMEAAGVSAVAVHGRTRTQMYAGTANWDYIREVKQAV 179
Query: 202 SVPMVANGGV 211
S+P++ANG V
Sbjct: 180 SIPVIANGDV 189
>UniRef50_A6GHV6 Cluster: Dihydrouridine synthase family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Dihydrouridine
synthase family protein - Plesiocystis pacifica SIR-1
Length = 321
Score = 52.8 bits (121), Expect = 6e-06
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 102 GVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRL-LNDIKKT 160
G+DLN GCP K G +LL P + + + +R +P + ++VKIR+ D
Sbjct: 88 GIDLNFGCPAKTVNSSDGGATLLKDPCRVEAVTRAVRAAVPAELPVTVKIRVGWEDPSPV 147
Query: 161 VILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVREALSVPMVANG 209
V + + E G ++LT PVD + + A+S+ +VANG
Sbjct: 148 VEIARAAEAGGASWLTIHGRTRRQLYKPPVDYEAIGRAQAAVSMAVVANG 197
>UniRef50_Q5CRK5 Cluster: Ylr401cp-like protein with 2 CCCH domains
plus Dus1p tRNA dihydrouridine synthase Tim barrel; n=2;
Cryptosporidium|Rep: Ylr401cp-like protein with 2 CCCH
domains plus Dus1p tRNA dihydrouridine synthase Tim
barrel - Cryptosporidium parvum Iowa II
Length = 707
Score = 52.8 bits (121), Expect = 6e-06
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ AP+ + FR L F AD+ + M+L + + + + Q A
Sbjct: 319 ILAPLTTVGNLPFRRLCLKFGADVTVSEMVLCNEILSGKASELALLKKSPEEKYFGIQLA 378
Query: 83 ANNRDDFVDASKLVYPYV--DGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
N+ + + + + D +D+N CP K G G L+ + + +VKGL+ V
Sbjct: 379 GGNKSTIIKTGEFINEHCEFDFIDINAACPLKSLHDKGAGSILVDRVSELETMVKGLKKV 438
Query: 141 LPNKFSISVKIRL 153
+ K ++VK+R+
Sbjct: 439 MDGKL-VTVKVRM 450
>UniRef50_A7S213 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 570
Score = 52.8 bits (121), Expect = 6e-06
Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 19/217 (8%)
Query: 17 NKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFP 76
+K YL AP+ + FR + + + AD+ M + + Q ++ +++
Sbjct: 218 DKLYL---APLTTIGNLPFRRICKQYGADITCGEMAMCTNLLQGQQSEWALVKRHSSEDI 274
Query: 77 VIAQFAANNRDDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIV 134
Q D ++L+ VD +D+N GCP G G +L+ + + IV
Sbjct: 275 FGVQLCGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALMERKGKLQQIV 334
Query: 135 KGLRNVLPNKFSISVKIRL-LNDIKKT---VILCQQLEKCGVTFLT----SMEEHCTKSS 186
+G+++V+ ++VKIR ++D K T L L G +T S E+ TKS+
Sbjct: 335 QGMKSVI--DIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWGTDMVTIHGRSREQRYTKSA 392
Query: 187 GPVDINGLKEVREALS-VPMVANGGVKHLNDATTYMK 222
D + + EV + S +P+ NG + DA + K
Sbjct: 393 ---DWDYISEVAKLASPMPVFGNGDILSFEDAMQHRK 426
>UniRef50_O83945 Cluster: Probable tRNA-dihydrouridine synthase;
n=2; Treponema|Rep: Probable tRNA-dihydrouridine
synthase - Treponema pallidum
Length = 340
Score = 52.8 bits (121), Expect = 6e-06
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ YS FR++ + A +T M+ +++ ++S + + Q +
Sbjct: 24 APVAGYSDSAFRSIAIEWEASFTYTEMVSSEAMVRDSLNTKRLIRRASNETHYAIQIFGS 83
Query: 85 NRDDFVDASKLVYPYVDG--VDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL- 141
N + +KL+ +D+N GCP K G G +L +P +Y++VK + + +
Sbjct: 84 NPAVMAETAKLIVDSAQPSCIDINAGCPMPKITKTGAGAALTREPTRLYEVVKAVADAVY 143
Query: 142 --PNKFSISVKIR 152
+ ++VKIR
Sbjct: 144 AQDARIPVTVKIR 156
>UniRef50_Q6MRF1 Cluster: Transcription regulator homolog yacF; n=1;
Bdellovibrio bacteriovorus|Rep: Transcription regulator
homolog yacF - Bdellovibrio bacteriovorus
Length = 337
Score = 52.4 bits (120), Expect = 9e-06
Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 6/198 (3%)
Query: 18 KTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPV 77
KT V APM + FRT ++ +A + T ++ A S + P+
Sbjct: 8 KTNPFVLAPMAGITDHAFRTFIKKLDASVVVTELVSASGIEYKSDRTLKLMSFDESQRPI 67
Query: 78 IAQFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
Q + A+++ D VDLN GCP +K G G ++L P + +V
Sbjct: 68 GIQLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVVKKGAGSAILKDPAAVQKMVST 127
Query: 137 LRNVLPNKFSISVKIRLLNDI--KKTVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDING 193
++ + K +++KIR D + +C GV+++ +S +G D +
Sbjct: 128 VKAAI--KIPLTIKIRTGWDANSRNATEICNIAYNEGVSWVAIHGRTRAQSYTGLADWDF 185
Query: 194 LKEVREALSVPMVANGGV 211
+ +V+ +P++ NG +
Sbjct: 186 IADVKANTKIPILGNGDI 203
>UniRef50_Q3E0H8 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=5; Chloroflexi (class)|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Chloroflexus
aurantiacus J-10-fl
Length = 407
Score = 52.4 bits (120), Expect = 9e-06
Identities = 47/220 (21%), Positives = 93/220 (42%), Gaps = 3/220 (1%)
Query: 1 MKEICDIMEKFADAKINKTYLKVCAPMVRYSKVHFRTLV-RNFNADLCFTPMILADSFCQ 59
++EI + + A I + APM + FR ++ R L T M A S
Sbjct: 64 LEEIARLPTSYQVAHIRIEPNIILAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSP 123
Query: 60 NSKARANEFMTTTTDFPVIAQFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDG 118
+ R + P+ Q + N+ D +A+++V D +D+NCGCP G
Sbjct: 124 KALRRHRLLDYLPEERPLTMQISGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGG 183
Query: 119 YGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSM 178
+G +LL + +++ +R + ++ + + ++ E GV+ L
Sbjct: 184 HGSALLRDLPKMERLLRAVREAVQIPVTLKFRAGWDEQSLNFIEAGKRAEAAGVSALALH 243
Query: 179 EEHCTKS-SGPVDINGLKEVREALSVPMVANGGVKHLNDA 217
+ G D + + +++A+S+P++ +G V +DA
Sbjct: 244 PRTREQGYKGQADWSRVAALKQAVSIPVIGSGDVTSAHDA 283
>UniRef50_Q884C6 Cluster: tRNA-dihydrouridine synthase C; n=8;
Proteobacteria|Rep: tRNA-dihydrouridine synthase C -
Pseudomonas syringae pv. tomato
Length = 317
Score = 52.4 bits (120), Expect = 9e-06
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 103 VDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVI 162
+DLN GCP K + G LL +PE+++ IV +R +P ++ K+RL + +
Sbjct: 92 LDLNFGCPAKTVNRSRGGAILLKEPELLHTIVSQVRRAVPKDIPVTAKMRLGYENTDGAL 151
Query: 163 LCQQLEKCGVTFLTSMEEHCTKSSG---PVDINGLKEVREALSVPMVANGGVKHLND 216
C + G + TK G P + ++E + VP+VANG + + D
Sbjct: 152 DCARALADGGAAQIVVHAR-TKVDGYKPPAHWEWIARIQEVVKVPVVANGEIWTVED 207
>UniRef50_Q489F6 Cluster: NifR3/Smm1 family protein; n=2;
Proteobacteria|Rep: NifR3/Smm1 family protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 338
Score = 52.0 bits (119), Expect = 1e-05
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 2/189 (1%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM + FR L A L + M+ ++ N++ + Q A +
Sbjct: 15 APMAGITDQPFRQLCCQLGAGLAVSEMLSSNPKVWNTEKSKLRMLHGDAAGIRSVQIAGS 74
Query: 85 NRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
D+ A+K+ +D+N GCP K K G +LL +P + IV+ + N +
Sbjct: 75 CPDELAFAAKVNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIVQSVVNAVDI 134
Query: 144 KFSISVKIRLLNDIKKTVILCQQLEKCGVTFL-TSMEEHCTKSSGPVDINGLKEVREALS 202
++ ++ D + + + + E G+ L G + + +K ++ A+S
Sbjct: 135 PVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAVHGRTRNDFYKGNAEYDTIKAIKLAIS 194
Query: 203 VPMVANGGV 211
+P+VANG +
Sbjct: 195 IPVVANGDI 203
>UniRef50_Q1N033 Cluster: Putative uncharacterized protein; n=1;
Oceanobacter sp. RED65|Rep: Putative uncharacterized
protein - Oceanobacter sp. RED65
Length = 321
Score = 52.0 bits (119), Expect = 1e-05
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 14/204 (6%)
Query: 25 APMVRYSKVHFRTLV-RNFNADLCFTPMI------LADSFCQNSKARANEFMTTTTDFPV 77
APM VH RTL+ R D C T + L + + ++ T PV
Sbjct: 6 APMEGLVDVHMRTLLTRGGYFDYCVTEFLRVTTQLLPERSFRRICPESDHQWKTPAGTPV 65
Query: 78 IAQFAANNRDDFVD-ASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
Q ++ + A + V++N GCP ++ G LL P+ I+ I++
Sbjct: 66 HLQLLGSDPVAMAENACRAAELGAPVVNINFGCPSRFVNGRCGGAYLLQFPDQIHTILES 125
Query: 137 LRNVLPNKFSISVKIRL-LNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSG---PVDIN 192
+R LP ++ K+RL D + Q +E GV + TK G P +
Sbjct: 126 VRKALPEHVPLTAKMRLGFKDDALALANAQAMESAGVRDICIHAR--TKVQGYRPPAHWH 183
Query: 193 GLKEVREALSVPMVANGGVKHLND 216
+K +++ + VP++ANG + + D
Sbjct: 184 QIKNIKQQVKVPIIANGEIWNRRD 207
>UniRef50_Q056Y8 Cluster: TRNA-dihydrouridine synthase A; n=1;
Buchnera aphidicola str. Cc (Cinara cedri)|Rep:
TRNA-dihydrouridine synthase A - Buchnera aphidicola
subsp. Cinara cedri
Length = 348
Score = 51.6 bits (118), Expect = 1e-05
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 8/148 (5%)
Query: 10 KFADAKINKTYLKV--CAPMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARAN 66
K + K+ K Y APM +Y+ H R +T MI + K
Sbjct: 17 KINNIKMKKKYSNKFSVAPMFKYTDQHCLYFYRQLTKKTFLYTEMITIQKMLFSKKLFKK 76
Query: 67 EFMTTTTDFPVIAQFAANNRDDF-VDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLS 125
+ + P+ Q A NN + A K + ++LN GCP K A +G L++
Sbjct: 77 KQIKKNN--PIAIQLAGNNPLFLSLCAKKAYFLGFKEINLNIGCPSKKAKSGNFGIYLMN 134
Query: 126 KPEIIYDIVKGLRNVLPNKFSISVKIRL 153
P ++Y+++K + +P IS+KIRL
Sbjct: 135 NPILVYNLIKAIYLTVP--IQISIKIRL 160
>UniRef50_A1RNI1 Cluster: TIM-barrel protein, yjbN family; n=30;
Bacteria|Rep: TIM-barrel protein, yjbN family -
Shewanella sp. (strain W3-18-1)
Length = 343
Score = 51.6 bits (118), Expect = 1e-05
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM+ ++ H+R R +A L +T M+ + R + + P+ Q
Sbjct: 28 APMLDWTDRHYRYFARLMSAKALLYTEMVTTGAILHG---RGDYLAYNQEEHPLALQLGG 84
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
+N D +KL D V+LN GCP +G L+++PE++ + V ++ V+
Sbjct: 85 SNPQDLARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVD 144
Query: 143 NKFSISVKI 151
++ +I
Sbjct: 145 IPVTVKTRI 153
>UniRef50_A3LUK5 Cluster: Dihydrouridine synthase of tRNA; n=6;
Saccharomycetales|Rep: Dihydrouridine synthase of tRNA -
Pichia stipitis (Yeast)
Length = 613
Score = 51.6 bits (118), Expect = 1e-05
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 6/152 (3%)
Query: 6 DIMEKFADAK-INKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKAR 64
D K A+ K ++ K+ +P+ + +R L++ AD+ ++ M L+ Q + A
Sbjct: 229 DAPYKIAEKKRLDFRNAKIVSPLTTVGNLPYRRLMKKLGADITYSEMALSVPLLQATNAE 288
Query: 65 ANEFMTTTTDFPVIA-QFAANNRDDFVDASKLVY---PYVDGVDLNCGCPQKWAMKDGYG 120
T++P Q A + ++++ +V ++LNCGCP + G G
Sbjct: 289 WALPKAHRTEYPGYGVQIATSKHWAAAKVAEIISRETEHVSELNLNCGCPIDLLYRQGQG 348
Query: 121 CSLLSKPEIIYDIVKGLRNVLPNKFSISVKIR 152
+LL +P + I+K + N ++VKIR
Sbjct: 349 SALLEQPARLVRILKAM-NASSGDIPVTVKIR 379
>UniRef50_UPI0000499494 Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 515
Score = 51.2 bits (117), Expect = 2e-05
Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 7/191 (3%)
Query: 30 YSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAANNRDDF 89
+ + FR +V+ F D+ T MI+A+S + + +++ Q N
Sbjct: 180 FGNLPFRKVVKRFGCDVTMTEMIMAESLVEGKTSEWALVKRDSSEDIFGIQLCVGNSMLA 239
Query: 90 VDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSIS 148
A +++ D +LNC CP + K G G L+ +P+ I ++ +R+V +I
Sbjct: 240 AKACQVLNSVDCDFYELNCACPIDYVYKKGMGAQLIERPKRIESLLHAMRSVTERPVAIK 299
Query: 149 VKIRLLNDIKKTVIL--CQQLEKCGVTFL-TSMEEHCTKSSGPVDINGLKEVREALSVPM 205
V+ ++ + V+L C V+ + ++ TKS+ D + +K+ P+
Sbjct: 300 VRTGKSSNTIQDVLLPNCADYGAAMVSIHGRTRDQRYTKSA---DWDFIKQATTITQCPV 356
Query: 206 VANGGVKHLND 216
+ G + D
Sbjct: 357 IGVGDIYGYKD 367
>UniRef50_Q012U0 Cluster: Nitrogen regulation family protein; n=2;
Ostreococcus|Rep: Nitrogen regulation family protein -
Ostreococcus tauri
Length = 490
Score = 51.2 bits (117), Expect = 2e-05
Identities = 34/152 (22%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPV-----IA 79
APM+ Y+ HFR + R +A + D ++ + D+PV +
Sbjct: 105 APMMEYTTAHFRVMCRLMSAKTWLWTEMEVDQTLTHAVLEGTR-VDRFLDYPVETAATVL 163
Query: 80 QFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQ-KWAMKDGYGCSLLSKPEIIYDIVKGL 137
Q ++ + A+ + PY + ++LN GCP K A K +G +L+++P ++ + ++ +
Sbjct: 164 QLGGSDPEILGRATAIAAPYGYEEINLNSGCPSPKVAGKGCFGAALMTEPRLVAECLQAM 223
Query: 138 RNVLPNKFSISVKIRL-LNDIKKTVILCQQLE 168
P+ +S+K R+ +++ LC+ ++
Sbjct: 224 NENAPSGTPVSIKCRIGVDECDSYDALCEYVD 255
>UniRef50_A7HK00 Cluster: Dihydrouridine synthase DuS; n=4;
Thermotogaceae|Rep: Dihydrouridine synthase DuS -
Fervidobacterium nodosum Rt17-B1
Length = 322
Score = 50.8 bits (116), Expect = 3e-05
Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM + FR L A FT MI A S N K F V Q +
Sbjct: 14 APMAGVTDYPFRKLCLQHGAYFAFTEMISAKSVIINVKINEIYFPRQDEKDRVGVQLFGS 73
Query: 85 NRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNK 144
+ + +A+ +V VDLN GCP +K G G +LL +V+ +R+VL +
Sbjct: 74 DYAELSEAAAIVQEKGLWVDLNAGCPVSKVIKKGAGSALLKDLGEFRKVVRAMRSVL-KR 132
Query: 145 FSISVKI 151
F++ +I
Sbjct: 133 FTVKTRI 139
>UniRef50_A4BCJ5 Cluster: NifR3/Smm1 family protein; n=2;
Gammaproteobacteria|Rep: NifR3/Smm1 family protein -
Reinekea sp. MED297
Length = 314
Score = 50.8 bits (116), Expect = 3e-05
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 102 GVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRL 153
G+DLN GCP K G LL++PE IY +V+ +R+ LP ++S K+RL
Sbjct: 91 GLDLNFGCPSKTVNASKGGAVLLTEPESIYAVVRSVRDALPGDQTLSAKMRL 142
>UniRef50_A4AAB0 Cluster: TRNA-dihydrouridine synthase C; n=2;
unclassified Gammaproteobacteria|Rep:
TRNA-dihydrouridine synthase C - Congregibacter
litoralis KT71
Length = 328
Score = 50.8 bits (116), Expect = 3e-05
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 7/152 (4%)
Query: 71 TTTDFPVIAQFAANNRDDFVD-ASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEI 129
T++ PV Q + + AS+ GVDLN GCP K + G +L +PE
Sbjct: 65 TSSGVPVYLQILGGDPSVVAENASRAAELGAPGVDLNFGCPAKTVNRSDGGSIILREPER 124
Query: 130 IYDIVKGLRNVLPNKFSISVKIRL-LNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSG- 187
++ IV R LP +SVKIRL + + + + ++ + L T++ G
Sbjct: 125 VHRIVAATRQALPPSVPLSVKIRLGFDSSDRFLDIVSGIDAARPSELVIHAR--TRADGY 182
Query: 188 --PVDINGLKEVREALSVPMVANGGVKHLNDA 217
P + R +P++ANG + + DA
Sbjct: 183 RPPAYWEHIALARSKTRLPLIANGEIWGVGDA 214
>UniRef50_UPI0000E472BC Cluster: PREDICTED: similar to
tRNA-dihydrouridine synthase; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to
tRNA-dihydrouridine synthase - Strongylocentrotus
purpuratus
Length = 499
Score = 50.4 bits (115), Expect = 3e-05
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 17/146 (11%)
Query: 7 IMEKFADAKINKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARAN 66
+ E + ++++ + APMVR + R L + AD+ + ++ D + N
Sbjct: 27 VPEIWMSSRLSYANKVILAPMVRIGTLPTRLLALEYGADIVYCQELI-DFKMLTCRRHVN 85
Query: 67 EFMTT----TTDFPVIAQFAANNRDDFV------DA------SKLVYPYVDGVDLNCGCP 110
+ T + D VI + + D V DA +K+V V G+D+N GCP
Sbjct: 86 RVLGTVDYISKDDVVIFRTCSKETDRLVFQMGTADAQRALRVAKMVEKDVSGIDINMGCP 145
Query: 111 QKWAMKDGYGCSLLSKPEIIYDIVKG 136
+ +++K G G +LL KP+ I +I G
Sbjct: 146 KDFSLKGGMGAALLQKPDTIKEIPSG 171
>UniRef50_Q2UL89 Cluster: Uncharacterized conserved protein; n=15;
Pezizomycotina|Rep: Uncharacterized conserved protein -
Aspergillus oryzae
Length = 730
Score = 50.4 bits (115), Expect = 3e-05
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 74 DFPVIAQFAANNRDDFVDASKLVYPYVDG---VDLNCGCPQKWAMKDGYGCSLLSKPEII 130
DF AQ AAN + A++++ Y +DLNCGCP ++G G +LL P +
Sbjct: 394 DFRFGAQIAANKHWQALKATEVLSAYTPNLRVIDLNCGCPIDLLFREGAGSALLEHPSKL 453
Query: 131 YDIVKGLRNVLPNKFSISVKIRL 153
I++G+ N + + I+ KIR+
Sbjct: 454 ERILRGM-NAVSQEIPITAKIRM 475
>UniRef50_A6DU09 Cluster: Dihydrouridine synthase family protein;
n=1; Lentisphaera araneosa HTCC2155|Rep: Dihydrouridine
synthase family protein - Lentisphaera araneosa HTCC2155
Length = 334
Score = 50.0 bits (114), Expect = 5e-05
Identities = 35/79 (44%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 77 VIAQFAANNRDDFVDA-SKLVYPYV-DGVDLNCGCPQKWAMKDGYGCS-LLSKPEIIYDI 133
++AQ N D F +A SK V P V DGVD+N GCP +K G GCS L++ PEI ++
Sbjct: 82 IVAQVWGKNPDKFSEAISKYVDPEVFDGVDINMGCPVAKIVKQG-GCSALINTPEIAKEL 140
Query: 134 VKGLRNVLPNKFSISVKIR 152
V L K +SVK R
Sbjct: 141 V--LAAKAATKLPVSVKTR 157
>UniRef50_Q89LQ7 Cluster: Nitrogen regulation protein; n=22;
Alphaproteobacteria|Rep: Nitrogen regulation protein -
Bradyrhizobium japonicum
Length = 371
Score = 49.6 bits (113), Expect = 6e-05
Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 7/191 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM + R LV A L + M +D N + T P + Q A
Sbjct: 53 APMSGVTDSPVRRLVAELGAGLVVSEMTASDELA-NGHRMSRLRCEATGIGPHVVQLAGC 111
Query: 85 NRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
+ +++ D +D+N GCP + G +L+ + ++ +
Sbjct: 112 EAHWMAEGARIAEAEGADIIDINMGCPARHVTGGQSGSALMRDLDHAVGLIDA--TIAAV 169
Query: 144 KFSISVKIRLLND--IKKTVILCQQLEKCGVTFLTSM-EEHCTKSSGPVDINGLKEVREA 200
K +++K+RL D + L ++ E G+ +T C G D + ++ VREA
Sbjct: 170 KVPVTLKMRLGWDDRSRNAPELARRAEAAGIKLVTVHGRTRCQFYKGEADWDAIRTVREA 229
Query: 201 LSVPMVANGGV 211
+S+P++ NG +
Sbjct: 230 ISIPLIVNGDI 240
>UniRef50_O51243 Cluster: Putative uncharacterized protein BB0225;
n=3; Borrelia burgdorferi group|Rep: Putative
uncharacterized protein BB0225 - Borrelia burgdorferi
(Lyme disease spirochete)
Length = 335
Score = 49.6 bits (113), Expect = 6e-05
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 25 APMVRYSKVHFRTLVRNFNADLC-FTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APMV + HFR L+R + + +TPMI A S + + + P+ Q A
Sbjct: 10 APMVNITDEHFRYLIRLLSKKVTLYTPMISAKSIIMGDVKKIVK--QNPLESPIAIQIAT 67
Query: 84 NNRDDFVDASKLVYPYV--DGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
N+++D + A +++ + D +LN GCP G L+ + +I+K ++
Sbjct: 68 NSKNDALKAIQILEKHFNFDEYNLNVGCPSLKIQNANCGACLMGNANQVGEILKTMKE-N 126
Query: 142 PNKFSISVKIRL 153
NK IS+K RL
Sbjct: 127 TNK-PISIKHRL 137
>UniRef50_Q1JWD3 Cluster: Dihydrouridine synthase, DuS; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: Dihydrouridine
synthase, DuS - Desulfuromonas acetoxidans DSM 684
Length = 320
Score = 49.6 bits (113), Expect = 6e-05
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 67 EFMTTTTDFPVIAQFAANNRDDFVDASKLVYPYVDG-VDLNCGCPQKWAMKDGYGCSLLS 125
E + D P++ Q + + +A+++V V+LN GCP G ++L
Sbjct: 61 EILAGVDDVPLVVQLIGHRSESLAEAAQIVADLGGAHVNLNMGCPFGRTTTGKTGGAMLQ 120
Query: 126 KPEIIYDIVKGLRNVLPNKFSISVKIRL-LNDIKKTVILCQQLEKCGVTFLTSMEEHCT- 183
+PE I D ++ +R S+SVK+R +D ++ L EK GV F+
Sbjct: 121 EPEKIGDCLRAIRAAFHG--SVSVKVRAGYDDPEQIFDLLPVFEKYGVDFIVLHPRTVVQ 178
Query: 184 KSSGPVDINGLKEVREALSVPMVANG 209
K + D V A ++P++ANG
Sbjct: 179 KYADDADHAVTARVVAATALPVIANG 204
>UniRef50_Q9V0Y6 Cluster: Dihydroorotate dehydrogenase; n=8;
Euryarchaeota|Rep: Dihydroorotate dehydrogenase -
Pyrococcus abyssi
Length = 303
Score = 49.6 bits (113), Expect = 6e-05
Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 23/178 (12%)
Query: 62 KARANEFMTTTTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGC 121
+A EF DFPVI ++F ++ + D +LN CP GYG
Sbjct: 81 EAFLEEFRKEKFDFPVIVSIFGGTPEEFAFLAEKLGEVADAFELNLSCPH----AKGYGM 136
Query: 122 SLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEH 181
+ KPE +Y++VK +++V +K I+ ++DI++ + ++ GV+ + +++
Sbjct: 137 EIGQKPENVYEVVKAVKDV-TDKPVIAKLTPNVSDIRELGLAAEKAGADGVSAINTVKAI 195
Query: 182 C-----------TKSSG-------PVDINGLKEVREALSVPMVANGGVKHLNDATTYM 221
K G P+ + + ++ +L +P++ GG+ DA ++
Sbjct: 196 AIDIYAKRPILSNKFGGYSGPGVKPIALRAVYDLASSLDIPVIGIGGITTWQDAVEFL 253
>UniRef50_Q7UXK8 Cluster: Putative uncharacterized protein; n=3;
Planctomycetaceae|Rep: Putative uncharacterized protein
- Rhodopirellula baltica
Length = 374
Score = 49.2 bits (112), Expect = 8e-05
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTD--FPVIAQ 80
V A + YS + R + R +A ++L +K D PV Q
Sbjct: 41 VQAALSGYSDLPMRVIARRHSASYTICEVMLDQFLLSLTKREKTRHFLDIADEEHPVGGQ 100
Query: 81 FAANNRDDF-VDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
+ F A KLV D +D+N GCP K + G LS+P + +I++ R+
Sbjct: 101 LMGAEPEQFSAGALKLVEAGFDVIDVNFGCPVKKVLGRCRGGFHLSQPAVAIEILRRTRD 160
Query: 140 VLPNKFSISVKIR 152
V+P+ ++VK+R
Sbjct: 161 VVPDHIPVTVKMR 173
>UniRef50_Q6M9N8 Cluster: Putative uncharacterized protein; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein - Protochlamydia
amoebophila (strain UWE25)
Length = 297
Score = 49.2 bits (112), Expect = 8e-05
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 76 PVIAQFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIV 134
P+ Q + A+K++ D VDLNCGCP KDG G LL PE+I +IV
Sbjct: 26 PIGGQLCGSKPSIAGQAAKIIEELGFDIVDLNCGCPVDKITKDGSGSGLLKTPELIGEIV 85
Query: 135 KGLRNVLPNKFSISVKIRLLNDIKKTVI--LCQQLEKCGVTFLTSMEEHCTKS-SGPVDI 191
+ + + K ++VKIR D ++ + + Q +E+ G + + GP +
Sbjct: 86 CNMVSAV--KIPVTVKIRAGWDEQQIQVENIVQIVEQAGAQAICIHGRTRQQGYRGPANW 143
Query: 192 NGLKEVR-EALSVPMVANGGV 211
+K + A S+ ++ NG V
Sbjct: 144 EYIKRGKLAAKSIKIIGNGDV 164
>UniRef50_A6EDJ3 Cluster: Probable TIM-barrel protein, NifR3 family;
n=1; Pedobacter sp. BAL39|Rep: Probable TIM-barrel
protein, NifR3 family - Pedobacter sp. BAL39
Length = 335
Score = 49.2 bits (112), Expect = 8e-05
Identities = 39/200 (19%), Positives = 84/200 (42%), Gaps = 4/200 (2%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM S FR + + D+ +T I ++ +++ + + P+ Q +
Sbjct: 18 APMEDVSDPPFRFVCKQSGVDMMYTEFISSEGLIRDAAKSRAKLDIFEYERPIGIQIFGS 77
Query: 85 NRDDFVDASKLV-YPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
D +A+++ D +D+N GCP K G G +LL + + ++ K + N
Sbjct: 78 EIDHMREATEIASMAGPDLMDINYGCPVKQVACRGAGSALLQDIDKMVEMTKAVVNATHL 137
Query: 144 KFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVRE--A 200
++ ++ ++ K + ++L+ G+ LT G D ++E++
Sbjct: 138 PVTVKTRLGWDDNTKNVEEVAERLQDIGIQGLTIHGRTRAQMYKGEADWTLIREIKRNPR 197
Query: 201 LSVPMVANGGVKHLNDATTY 220
+ +P+ NG V + A +
Sbjct: 198 IKIPIFGNGDVDSIQKAADW 217
>UniRef50_Q9FI41 Cluster: Emb|CAB87804.1; n=7; Magnoliophyta|Rep:
Emb|CAB87804.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 387
Score = 49.2 bits (112), Expect = 8e-05
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADL-CFTPMILADSFCQNSKARANEFMTTTTD-FPVIAQFA 82
APM+ ++ H+RTL R +T M+ A++ + F+ + D P++ Q
Sbjct: 15 APMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQED-NLDSFLAFSPDQHPIVLQIG 73
Query: 83 ANNRDDFVDASKLVYPYV-DGVDLNCGCPQ-KWAMKDGYGCSLLSKPEII 130
N ++ A++L Y D ++ NCGCP K + + +G L+ P+ +
Sbjct: 74 GRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKFV 123
>UniRef50_Q0F181 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Mariprofundus ferrooxydans PV-1|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Mariprofundus ferrooxydans PV-1
Length = 341
Score = 48.8 bits (111), Expect = 1e-04
Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 2/191 (1%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V APM + + FR + + F L T MI + + + + PV Q A
Sbjct: 21 VLAPMAGITDLPFRRICKRFGVGLMVTEMIASRAVDMGRERTERMAELGDDEHPVSIQIA 80
Query: 83 ANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
++ + +A++ + D VD+N GCP K K G ++L ++ ++ + +
Sbjct: 81 GSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGSAMLRDEALVARVLAAVVAAV 140
Query: 142 PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVREA 200
++ ++ + K + + E G+ LT G + + A
Sbjct: 141 DVPVTLKIRTGWDDQSKNVQNIARIAEDSGIQLLTVHGRTRAQMFHGHACWEDIGLAKAA 200
Query: 201 LSVPMVANGGV 211
+S+P++ NG +
Sbjct: 201 VSIPVIGNGDI 211
>UniRef50_Q04VP3 Cluster: TRNA-dihydrouridine synthase; n=4;
Leptospira|Rep: TRNA-dihydrouridine synthase -
Leptospira borgpetersenii serovar Hardjo-bovis (strain
JB197)
Length = 339
Score = 48.8 bits (111), Expect = 1e-04
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 15 KINKTYLKVCAPMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTT 73
KI K Y APM+ + HFR +R + +T MI + + R + +
Sbjct: 7 KIPKRYPVSLAPMMDRTDRHFRYFLRLISKHTFLYTEMIHTGAILHGDRRRFLSY--SPE 64
Query: 74 DFPVIAQFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYD 132
+ P+ Q +N ++SK+ Y ++LN GCP + +G L+ PE + +
Sbjct: 65 ELPLAIQLGGDNPKALAESSKIGEDYGYSEINLNVGCPSDRVREGNFGACLMETPERVAE 124
Query: 133 IVKGLRNVLPNKFSISVKIRLLNDIKKTV-ILCQQLE 168
+V + + ++VK R+ K+T+ LC+ +E
Sbjct: 125 LVCAMDGNV--SIPVTVKCRIGISGKETLEDLCRFIE 159
>UniRef50_A5EVV4 Cluster: Dihydrouridine synthase; n=1;
Dichelobacter nodosus VCS1703A|Rep: Dihydrouridine
synthase - Dichelobacter nodosus (strain VCS1703A)
Length = 318
Score = 48.8 bits (111), Expect = 1e-04
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 7/192 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILA-DSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM S + +R+L + F + M+ A F +++ FP I Q
Sbjct: 17 APMAGISDLPYRSLCQRFGSHYTIAEMVDARPQFLAMPESQLRLQFDDDARFPKIVQLVG 76
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
+ + ++++ D +D+N GCP K K G +LLS + I+ + V+
Sbjct: 77 GDPYLMAETAQVMQALGCDVIDINMGCPAKKVGKQNAGSALLSDLPQVEKILAQVTRVV- 135
Query: 143 NKFSISVKIRL-LNDIKKTV-ILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVRE 199
+++K RL N+ T+ + + E GV LT + +G + + V+
Sbjct: 136 -SIPVTLKTRLGFNEQTMTIETVAKIAENTGVAALTVHGRTRAQRFNGTAHYDEIGRVKA 194
Query: 200 ALSVPMVANGGV 211
S+P++ NG +
Sbjct: 195 QTSLPIIVNGDI 206
>UniRef50_A4TZK1 Cluster: Dihydrouridine synthase, DuS; n=4;
Proteobacteria|Rep: Dihydrouridine synthase, DuS -
Magnetospirillum gryphiswaldense
Length = 335
Score = 48.8 bits (111), Expect = 1e-04
Identities = 38/198 (19%), Positives = 88/198 (44%), Gaps = 3/198 (1%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ APM + + R LV+ A L + MI + + + ++ + P+ Q A
Sbjct: 21 ILAPMSGVTDMPCRRLVKRMGAGLVVSEMIASQAMIRANRQTMKMASNCAEEHPMSVQLA 80
Query: 83 ANNRDDFVDASKLVYPYVDGV-DLNCGCPQKWAMKDGYGCSLLSKPEIIY-DIVKGLRNV 140
+ +A+++ + D+N GCP K G S L K EI+ +++
Sbjct: 81 GCEPEVMAEAARMNADRGAAIIDINMGCPVKKVAVKGEAGSALMKDEILAGQLMEATVRA 140
Query: 141 LPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVRE 199
+ ++ ++ ++ L + ++ G+ +T + +G D +++V++
Sbjct: 141 VDVPVTLKCRMGWDHNRLNAPRLARIAQESGIKMVTIHGRTRQQFYTGTADWKFVRQVKD 200
Query: 200 ALSVPMVANGGVKHLNDA 217
A+ +P++ NG ++ ++DA
Sbjct: 201 AVDIPVIVNGDIETIDDA 218
>UniRef50_A1AW94 Cluster: TIM-barrel protein, yjbN family; n=1;
Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)|Rep: TIM-barrel protein, yjbN family - Ruthia
magnifica subsp. Calyptogena magnifica
Length = 322
Score = 48.8 bits (111), Expect = 1e-04
Identities = 27/133 (20%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNADL-CFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM+ ++ H R R + ++ +T M+ A + +K R +F + P++ Q
Sbjct: 10 APMMDWTDRHCRYFYRLISKNVQLWTEMVTARAILYGNKNRLLDF--NVCEHPLVLQLGG 67
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
+ + A+K+ + + +++N GCP +G L+ P+++ V +R ++
Sbjct: 68 SEPKEMAQAAKIAQDWGYNEININVGCPSNRVQSSNFGVCLMQTPQVVAQCVDAMRQMVD 127
Query: 143 NKFSISVKIRLLN 155
++ +I + N
Sbjct: 128 VPITVKSRIGVDN 140
>UniRef50_Q5HJT5 Cluster: Probable tRNA-dihydrouridine synthase;
n=41; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
- Staphylococcus aureus (strain COL)
Length = 328
Score = 48.8 bits (111), Expect = 1e-04
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 7/135 (5%)
Query: 23 VCAPMVRYSKVHFRTLVRNF-NADLCFTPMILADSFCQNSKARANEFMTTTTDF--PVIA 79
+ APM + + FR +V D+ FT +SFC + T ++ P++A
Sbjct: 15 ILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQPMVA 74
Query: 80 QFAANNRDDFVDAS-KLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLR 138
+ + F + S +L G+DLN GCP K G G L+ +P++ +I++ +
Sbjct: 75 HIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATK 134
Query: 139 NVLPNKFSISVKIRL 153
+SVK RL
Sbjct: 135 ---AGGLPVSVKTRL 146
>UniRef50_A1IF01 Cluster: Dihydrouridine synthase family protein;
n=1; Candidatus Desulfococcus oleovorans Hxd3|Rep:
Dihydrouridine synthase family protein - Candidatus
Desulfococcus oleovorans Hxd3
Length = 326
Score = 48.4 bits (110), Expect = 1e-04
Identities = 38/197 (19%), Positives = 78/197 (39%), Gaps = 2/197 (1%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ AP+ + FR L + L ++ M+ + S+ TT + P Q
Sbjct: 13 ILAPLAGITDAPFRRLAKAAGCALVYSEMVSSHGLFYQSEKTGAMLRTTPEEAPFAVQIF 72
Query: 83 ANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
A+ +V +D+N GC K +K G G +L+ + ++++ +R+ +
Sbjct: 73 GGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGAGAALMKDLPLAAEVIQAVRDAV 132
Query: 142 PNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGLKEVREA 200
+I ++ D L + E GV + T+ G D + + +++
Sbjct: 133 SIPLTIKMRSGWNPDGSDAFHLAEIAEARGVNAVALHPRTATQGFGGTADWSLIAALKQR 192
Query: 201 LSVPMVANGGVKHLNDA 217
+P++ NG + DA
Sbjct: 193 TGLPVIGNGDIVLPEDA 209
>UniRef50_Q7X346 Cluster: Putative uncharacterized protein; n=1;
uncultured Acidobacteria bacterium|Rep: Putative
uncharacterized protein - uncultured Acidobacteria
bacterium
Length = 355
Score = 48.0 bits (109), Expect = 2e-04
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 13/193 (6%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFP----VIAQ 80
APM + S + +R L A + + M LA + K + N FP Q
Sbjct: 2 APMTKGSNLPYRRLCVELGARITVSEMTLA----RRLKQKRNSEFALIRRFPGEPCFGVQ 57
Query: 81 FAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
A N D+ A+ LV D VD+N GCP + + G G S+ +P+ + +V+ ++
Sbjct: 58 LAGNKPDETAWAAALVESRGADFVDINFGCPIDYFTRKGLGASIGRQPQRMRRLVEAIKG 117
Query: 140 VLPNKFSISVKIRL-LNDIKKTVILCQQLEKCG--VTFLTSMEEHCTKSSGPVDINGLKE 196
+ N ++ KIRL ND + + Q G + D + +
Sbjct: 118 SVTN-IPVTAKIRLGWNDDDRNYLQQAQAAVDGGAAALFVHGRTRNARYRFAADWDAIAR 176
Query: 197 VREALSVPMVANG 209
+ A+ VP++ NG
Sbjct: 177 IVAAVPVPVIGNG 189
>UniRef50_UPI0000DAE45A Cluster: hypothetical protein
Rgryl_01000346; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000346 - Rickettsiella
grylli
Length = 330
Score = 47.6 bits (108), Expect = 2e-04
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 25 APMVRYSKVHFRTLVRNF--NADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
APM+ ++ H+ R A L +T M A + + S AR + + Q
Sbjct: 15 APMLGWTTRHYHYFFRLICKKAQL-YTEMFTAQAILK-SPARERLLTVDANEKALAIQLG 72
Query: 83 ANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
D A+K+V Y ++LN GCP + G+G LL +P + D + ++ V+
Sbjct: 73 GGIASDLSKAAKIVESYGYSEINLNVGCPSEKVQSGGFGVVLLKEPNRVADAIAAMKAVV 132
Query: 142 PNKFSISVKIRLLND 156
++ +I + ND
Sbjct: 133 RLPVTVKTRIGVDND 147
>UniRef50_Q2RZL4 Cluster: NifR3 family enzyme; n=1; Salinibacter
ruber DSM 13855|Rep: NifR3 family enzyme - Salinibacter
ruber (strain DSM 13855)
Length = 443
Score = 47.6 bits (108), Expect = 2e-04
Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 6/190 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
APM S FR L + + AD+ +T + + + + + + P+ Q
Sbjct: 80 APMEDVSDPPFRILCKRYGADMMYTEFVSSAGLLREQEHEHQKLEIFDEERPIGIQVWGG 139
Query: 85 NRDDFVDASKLVYPY-VDGVDLNCGCP-QKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
D+ +A+ +V D +D+N GCP +K KDG G +L + + +I +
Sbjct: 140 GIDEVRNATPMVDAAGPDVIDINFGCPVRKIVQKDG-GAGVLRNLDKMRNITAAVMEEAT 198
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVRE-- 199
++ ++ +D V + + LE GV LT K G L+ ++E
Sbjct: 199 RPVTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVHARTREQKYKGDARWEWLRTIKEEG 258
Query: 200 ALSVPMVANG 209
+P + NG
Sbjct: 259 TRDMPFIGNG 268
>UniRef50_Q7UBC5 Cluster: tRNA-dihydrouridine synthase A; n=231;
Bacteria|Rep: tRNA-dihydrouridine synthase A - Shigella
flexneri
Length = 330
Score = 47.6 bits (108), Expect = 2e-04
Identities = 45/215 (20%), Positives = 94/215 (43%), Gaps = 22/215 (10%)
Query: 25 APMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM+ ++ H R +R + + L +T M+ + + + + + PV Q
Sbjct: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPVALQLGG 72
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
++ +KL D ++LN GCP +G L+ +++ D VK +R+V+
Sbjct: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV- 131
Query: 143 NKFSISVKIRL-LNDIKKTVILCQQLE------KCGV-------TFLTSMEEHCTKSSGP 188
++VK R+ ++D LC + +C + +L+ + + P
Sbjct: 132 -SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190
Query: 189 VDINGLKEV-REALSVPMVANGGVKHLNDATTYMK 222
+D + ++ R+ + M NGG+K L +A +++
Sbjct: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ 225
>UniRef50_Q2NEG1 Cluster: PyrD; n=1; Methanosphaera stadtmanae DSM
3091|Rep: PyrD - Methanosphaera stadtmanae (strain DSM
3091)
Length = 306
Score = 47.2 bits (107), Expect = 3e-04
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 76 PVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVK 135
PVIA ++ + F D + YVD +LN CP K G+G ++ PE+ +DIV
Sbjct: 94 PVIASIYGDSEEVFSDVANQTKDYVDAFELNVSCPH---AKCGFGSNIGENPELTHDIVS 150
Query: 136 GLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT 176
+++ N + + ++L ++ + + E G LT
Sbjct: 151 SVKD---NIKDVPIIVKLTPNVTDITEIAKAAEDAGADALT 188
>UniRef50_Q2IG49 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=2; Anaeromyxobacter|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Anaeromyxobacter
dehalogenans (strain 2CP-C)
Length = 352
Score = 46.8 bits (106), Expect = 4e-04
Identities = 38/195 (19%), Positives = 75/195 (38%), Gaps = 2/195 (1%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ S FR + R A +T M+ A + ++ + P Q A+
Sbjct: 15 APLAGVSDRPFRAICRRMGASFAYTEMVSAHGLMHGALQTSSYLDREPDEDPFAVQIFAS 74
Query: 85 NRDDFVDASKLVYPYVDG-VDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
D + + G +D+N CP K G G ++ P + + V+ +R +P
Sbjct: 75 EPDVLARGAVVAVQAGAGMIDVNMACPVKKVCGSGAGAAMGRDPRKVEEAVRAIRAAVPV 134
Query: 144 KFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVREALS 202
++ ++ V + + E G + SG ++ V++A++
Sbjct: 135 PVTVKIRAGWDEGEVNCVDVARAAEAGGAAAVALHGRTRSQLYSGKARWELVRAVKQAVA 194
Query: 203 VPMVANGGVKHLNDA 217
+P++ +G V DA
Sbjct: 195 IPVLGSGDVWTAGDA 209
>UniRef50_Q4Q231 Cluster: Dihydrouridine synthase domain
protein-like protein; n=3; Leishmania|Rep:
Dihydrouridine synthase domain protein-like protein -
Leishmania major
Length = 455
Score = 46.8 bits (106), Expect = 4e-04
Identities = 15/51 (29%), Positives = 35/51 (68%)
Query: 100 VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVK 150
+DG+D+N GCP+K+++ +G+G +L+ +PE+ IV+ + + + ++ +
Sbjct: 144 IDGIDINMGCPKKFSVHNGFGAALMKRPEVGGAIVRAVHGAVNSDSNVEAR 194
>UniRef50_A1AT39 Cluster: Dihydrouridine synthase, DuS; n=7;
Desulfuromonadales|Rep: Dihydrouridine synthase, DuS -
Pelobacter propionicus (strain DSM 2379)
Length = 342
Score = 46.4 bits (105), Expect = 6e-04
Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 7/194 (3%)
Query: 25 APMVRYSKVHFRTLVRNF-NADLCFTPMILADSFCQNSKARANEFMTTTT---DFPVIAQ 80
APM + R+L ++ D+ FT + + + A + + D P++ Q
Sbjct: 39 APMQGVTNSALRSLFIDWVRPDVVFTEFMRVNPAAAQRRLSAADLAEAGSAGDDVPLVVQ 98
Query: 81 FAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
+ R+ V S+ ++LN GCP G +L P+ + I+ LR
Sbjct: 99 LIGHGREALVSGSQAAQDAGAAHINLNMGCPYGRMTSGQTGGGMLRSPQELSSIIPALRK 158
Query: 140 VLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVR 198
+ FSI ++ N ++ L E GV FL K +G D E
Sbjct: 159 TIRGTFSIKLRSGYDNP-RQIFDLLPLFEASGVDFLVLHPRTVLQKYAGFADHGITAEAV 217
Query: 199 EALSVPMVANGGVK 212
+ ++P++ANG ++
Sbjct: 218 QRSTLPIIANGDIR 231
>UniRef50_Q06053 Cluster: tRNA-dihydrouridine synthase 3; n=6;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 609
Score = 46.0 bits (104), Expect = 7e-04
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 22 KVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVI-AQ 80
K+ +P+ + +R L+R AD+ ++ M LA Q + + T++FP Q
Sbjct: 295 KIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGTNSEWALPKAHTSEFPGFGVQ 354
Query: 81 FAANNRDDFVDASKLV---YPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGL 137
A + A++ + + ++LN GCP + G G +LL P + + +
Sbjct: 355 VACSKAWQAAKAAEALANSVSEISEINLNSGCPIDLLYRQGSGSALLDNPARMIRCLNAM 414
Query: 138 RNVLPNKFSISVKIR 152
N + I+VKIR
Sbjct: 415 -NYVSKDIPITVKIR 428
>UniRef50_Q5ZVH8 Cluster: Zinc binding TIM barrel protein, YjbN
family; n=4; Legionella pneumophila|Rep: Zinc binding
TIM barrel protein, YjbN family - Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 /ATCC 33152 /
DSM 7513)
Length = 334
Score = 45.6 bits (103), Expect = 0.001
Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
Query: 16 INKTYLKVC-APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTD 74
+N + K+ APM+ ++ FRTL+R + + QN+ RA F + +
Sbjct: 6 VNSIFSKLSIAPMIDWTNSPFRTLMRLLAPNALLYTEMQTTGAVQNNPDRALYF--NSVE 63
Query: 75 FPVIAQFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDI 133
P+ Q ++ V + + + ++LN GCP +G L+ +PE + D
Sbjct: 64 HPLAIQLGGADKSALVKCAIIAEQKGFNEINLNLGCPSDKVQAGRFGACLMKEPEHVADC 123
Query: 134 VKGLRNVLPNKFSISVKIRLLN 155
++ ++ V+ + +I + N
Sbjct: 124 IRAIKQVVGIPVTAKTRIGIDN 145
>UniRef50_Q8SUY1 Cluster: Putative uncharacterized protein
ECU07_1170; n=1; Encephalitozoon cuniculi|Rep: Putative
uncharacterized protein ECU07_1170 - Encephalitozoon
cuniculi
Length = 357
Score = 45.6 bits (103), Expect = 0.001
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 25 APMVRYSKVHFRTLVR-NFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM+ + HFR +R + FT MI++++ + + E + D V+ Q
Sbjct: 18 APMMDVTTAHFRRFIRLTSEKTVLFTEMIVSNTVIHVPRDKLRERLGEYDDRTVV-QIGG 76
Query: 84 NNRDDFVDASKLVYPYVDGV-DLNCGCPQKWAMKDGYGCSLLSKPEIIYDIV 134
++ V+A +++ + +LNCGCP K +G L+ E++ +I+
Sbjct: 77 SDATSMVEAVRILQGLGYRMFNLNCGCPSSRVKKGSFGAVLMLNRELVAEII 128
>UniRef50_Q6AJ40 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 318
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 76 PVIAQFAANNRDDFVD-ASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIV 134
PVI Q NN +DF+ A +L ++ N GCP K G +L+ P++I + +
Sbjct: 64 PVIPQLLHNNAEDFIALAGRLAELGYKEINWNLGCPAPMVAKKKRGSGMLAHPDLIVEFL 123
Query: 135 KGLRNVLPNKFSISVKIRLLNDIKKTVIL 163
+ + +P K SI ++ N + +L
Sbjct: 124 EEVLPQIPVKLSIKTRLGYSNTAQTKELL 152
>UniRef50_A5GPV9 Cluster: TRNA-dihydrouridine synthase A; n=21;
Cyanobacteria|Rep: TRNA-dihydrouridine synthase A -
Synechococcus sp. (strain RCC307)
Length = 335
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 25 APMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM+ Y+ HFR ++R + L +T M++A + + F + P+ Q
Sbjct: 19 APMMDYTDRHFRVVMRQVSRHALLYTEMVVAQALHHGRQDTLLGF--DPLEKPIALQLGG 76
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGL 137
++ +A++L + D ++LN GCP K +G L+++P+ + V+ +
Sbjct: 77 DDPALLAEAAELAERWGYDEINLNVGCPSPKVKKGRFGACLMAEPQQVARCVEAM 131
>UniRef50_A0EAZ6 Cluster: Chromosome undetermined scaffold_87, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_87,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 346
Score = 44.8 bits (101), Expect = 0.002
Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMT--TTTDFPVIAQF 81
APM+ + HFR R + + +T MI ++ + + + + + PV+ Q
Sbjct: 12 APMIDITYEHFRVFFRLLTKNCVLYTEMIHENAINLSRVLKPFPLVLDYSQVEHPVVCQL 71
Query: 82 AANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
N+ + A+++ D ++LN GCP + +G L+ +P ++ +K ++
Sbjct: 72 GGNDPEKLAKAAQIAEQAGFDEINLNVGCPSERVQDGAFGACLMKEPHLVAQCMKKMKEA 131
Query: 141 LPNKFSISVKIRL 153
+ K ++K RL
Sbjct: 132 V--KIPCTLKCRL 142
>UniRef50_O31546 Cluster: Probable tRNA-dihydrouridine synthase 2;
n=10; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
2 - Bacillus subtilis
Length = 325
Score = 44.8 bits (101), Expect = 0.002
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNA-DLCFTPMILADSFCQ-NSKARANEFMTTTTDF-PVIA 79
V APM + V FR +V D+ FT ++S+C + K +T T D P++A
Sbjct: 15 VLAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSESYCHPDGKDSVRGRLTFTEDEQPIVA 74
Query: 80 QFAANNRDDFVDAS-KLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLR 138
+ ++F S + G+D+N GCP +G G L+ +P + ++++ +
Sbjct: 75 HIWGDKPENFRKMSIGMAELGFKGLDINMGCPVPNVAGNGKGSGLICRPAVAAELIQAAK 134
Query: 139 NVLPNKFSISVKIRL 153
+SVK RL
Sbjct: 135 ---AGGLPVSVKTRL 146
>UniRef50_UPI000058804E Cluster: PREDICTED: similar to MGC53781
protein; n=3; Deuterostomia|Rep: PREDICTED: similar to
MGC53781 protein - Strongylocentrotus purpuratus
Length = 655
Score = 44.4 bits (100), Expect = 0.002
Identities = 39/200 (19%), Positives = 81/200 (40%), Gaps = 4/200 (2%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ + FR + + AD+ M + + Q + ++ Q
Sbjct: 287 APLTTVGNLPFRAVCKKLGADITCGEMAMCTNLLQGQSSEWALLRRHPSEDIFGVQLCGG 346
Query: 85 NRDDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
D ++L+ +D +D+N GCP G G L+++ +IV+G+ +VL
Sbjct: 347 FPDTMTRCAELLNDRLDIDFIDINVGCPIDLVYHKGAGSGLMNRMGKFQEIVRGMSSVLD 406
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKE-VREA 200
++ ++ + ND + +++ G + +T + S D + LK+ V+ A
Sbjct: 407 IPLTVKMRTGVHNDNPVAHKIVRRIYDWGASVVTVHGRTREQRYSKLADWDYLKDCVQAA 466
Query: 201 LSVPMVANGGVKHLNDATTY 220
P + NG + D+ +
Sbjct: 467 DPHPFIGNGDILSYEDSNFF 486
>UniRef50_Q2RTR9 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Rhodospirillum rubrum ATCC 11170|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Length = 362
Score = 44.4 bits (100), Expect = 0.002
Identities = 42/203 (20%), Positives = 87/203 (42%), Gaps = 6/203 (2%)
Query: 21 LKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDF----P 76
L + APM + FR L ++ L +T M+ + + + + + P
Sbjct: 13 LIMLAPMAGVTDSPFRRLAHDYGCPLSWTEMVASRELLRERARGVDPRLGGGAEAGRAGP 72
Query: 77 VIAQFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVK 135
Q A + +A++ V + +D+N GCP + + G +L+ + I++
Sbjct: 73 FAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLPLAARILE 132
Query: 136 GLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSM-EEHCTKSSGPVDINGL 194
+ + S+ +++ + + V L + E G++ LT G D +
Sbjct: 133 AVVGAVTLPVSLKMRLGWDDASRNAVELARLAESAGISRLTVHGRTRAQMYDGRADWPAI 192
Query: 195 KEVREALSVPMVANGGVKHLNDA 217
V+ A+S+P++ANG V +L++A
Sbjct: 193 GLVKRAVSLPVIANGDVTNLSEA 215
>UniRef50_A4RVX6 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 371
Score = 44.4 bits (100), Expect = 0.002
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 103 VDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVI 162
+DLNCGCP G G SLL PE +Y VK + + V ++L + + +
Sbjct: 95 IDLNCGCPANVVTGKGAGSSLLRDPEYVYACVKAVADGARGS-GAHVTMKLRSGYDDSSL 153
Query: 163 LCQQL---EKCGVTFLT-SMEEHCTKSSGPVDINGLKEVREALSVPMVANGGV 211
L + L + G F++ SG + + ++ L +P++ NG V
Sbjct: 154 LRENLLAAREAGARFVSLHARTRAQGYSGRANWEEIAFAKDVLDIPVLGNGDV 206
>UniRef50_Q9VIS4 Cluster: CG10463-PA; n=3; Sophophora|Rep:
CG10463-PA - Drosophila melanogaster (Fruit fly)
Length = 604
Score = 44.4 bits (100), Expect = 0.002
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 11/202 (5%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V +P+ + FR + + F AD+ M A + ++ Q
Sbjct: 260 VLSPLTTLGNLPFRRICKEFGADITCGEMACAQPLLKGMGQEWALTKRHQSEDVFGVQLC 319
Query: 83 ANNRDDFVDASKLVYP--YVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
NN + A+++++ VD +DLN GCP + G G +L+ + I+ V+
Sbjct: 320 GNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTNILELTVRSCA-A 378
Query: 141 LPNKFSISVKIRLLNDIKKTVI--LCQQLEKCGVTFLT----SMEEHCTKSSGPVDINGL 194
L ++ +VK+R K+V L +E+ G + +T S E+ TK + I
Sbjct: 379 LSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASAVTLHGRSREQRYTKHANWAYIE-- 436
Query: 195 KEVREALSVPMVANGGVKHLND 216
+ +A +P++ NG + D
Sbjct: 437 ECAAKAKCMPVIGNGDILSYED 458
>UniRef50_Q7UKE8 Cluster: Putative uncharacterized protein; n=2;
Planctomycetaceae|Rep: Putative uncharacterized protein
- Rhodopirellula baltica
Length = 364
Score = 44.0 bits (99), Expect = 0.003
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 11/196 (5%)
Query: 25 APMVRYSKVHFRTLVRNF-NADLCFTPMILADSF--CQNSKARANEFMTTTTD--FPVIA 79
APM ++ FR +VR F A L T M+ A F ++A + + D P+
Sbjct: 33 APMAGFTNAAFRHIVRQFGGAGLLATEMVNARGFVWLDENEAEHPDRLWGVADEPRPLAV 92
Query: 80 QFAANNRDDFVDAS-KLVYPY-VDGVDLNCGCPQKWAMKDGY-GCSLLSKPEIIYDIVKG 136
Q N+ + +L Y V VD+N GCP + + + G LL +P ++ I+
Sbjct: 93 QIWDNDPETMAKVGRRLAEEYRVSVVDINFGCPVRQVTEKAHSGSYLLREPNRMHAIISR 152
Query: 137 LRNV-LPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKS-SGPVDINGL 194
L V P + +++ + + + +E+ G LT G D +
Sbjct: 153 LVQVCAPTPVTAKIRLGCSRENINCNEIARVVEEAGAAALTVHGRTAADMFRGNADWERI 212
Query: 195 KEVREAL-SVPMVANG 209
E++ L ++P++ NG
Sbjct: 213 SEIKSHLRNIPLIGNG 228
>UniRef50_A1IED4 Cluster: Putative uncharacterized protein; n=1;
Candidatus Desulfococcus oleovorans Hxd3|Rep: Putative
uncharacterized protein - Candidatus Desulfococcus
oleovorans Hxd3
Length = 324
Score = 44.0 bits (99), Expect = 0.003
Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 9/203 (4%)
Query: 21 LKVCAPMVRYSKVH-FRT-LVRNFNA-DLCFTPMILADSFCQNSKARANEFMTT-TTDFP 76
+ +C +R H FRT +F D P + + + A + + T P
Sbjct: 3 MTLCMAPIRGITDHIFRTAFAEHFGGFDTAVAPFVSSRKDRKIKSAHLKDLLPEYNTALP 62
Query: 77 VIAQFAANNRDDFVDASKLVYPYVDGV-DLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVK 135
V+ Q +N+ +DFV + +Y V + N GCP K G LL + I + +
Sbjct: 63 VVPQILSNSGEDFVYLADHLYDLGYSVTNWNLGCPYPMVAKKYRGAGLLPHTDRIAEFLD 122
Query: 136 GLRNVLPNKFSISVKIRL-LNDIKKTVILCQQLEKCGVT-FLTSMEEHCTKSSGPVDING 193
+ + + K +SVKIRL D + + L L + + + + G VD+
Sbjct: 123 TVMSRM--KGGLSVKIRLGWADTTELMGLLPVLHRYPLAELIVHPRTGIQRYEGTVDLAA 180
Query: 194 LKEVREALSVPMVANGGVKHLND 216
+ V E +P++ NG ++ + D
Sbjct: 181 FERVLENTGLPVMYNGDIQTVAD 203
>UniRef50_Q01ML2 Cluster: H0613H07.1 protein; n=10; Eukaryota|Rep:
H0613H07.1 protein - Oryza sativa (Rice)
Length = 685
Score = 43.6 bits (98), Expect = 0.004
Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 2/154 (1%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ + FR L + AD+ M + + Q + +++ Q
Sbjct: 337 APLTTVGNLPFRRLCKTLGADITCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 396
Query: 85 NRDDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
D +LV VD +D+N GCP + G G SLL+KP I IV+ V
Sbjct: 397 YPDTVARTVELVDNECSVDFIDINMGCPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTE 456
Query: 143 NKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT 176
++ V+ + + + G + +T
Sbjct: 457 KPLTVKVRTAFFEGRNRADSIVSDIYDWGASAIT 490
>UniRef50_Q5FTP7 Cluster: Nitrogen assimilation regulatory protein
NifR3; n=3; Acetobacteraceae|Rep: Nitrogen assimilation
regulatory protein NifR3 - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 371
Score = 43.2 bits (97), Expect = 0.005
Identities = 42/201 (20%), Positives = 88/201 (43%), Gaps = 10/201 (4%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
+ AP+ + + FR L R+ A L + MI + + + ++ P Q A
Sbjct: 38 ILAPLSGVTDLPFRQLARDLGAGLVVSEMIASWAMIRENE-NTMRMARMAERGPNAVQLA 96
Query: 83 ANNRDDFVDASKLVYPYVDG----VDLNCGCP-QKWAMKDGYGCSLLSKPEIIYDIVKGL 137
+ A+K+ VDG +D+N GCP +K A+ G +L+ + +++
Sbjct: 97 GCDPKAMAQAAKIS---VDGGANLIDINFGCPVKKVAIGQMAGSALMRDEVLAGKLLEAT 153
Query: 138 RNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSM-EEHCTKSSGPVDINGLKE 196
+ ++ +++ ++ L + E+ G+ +T +G D +K
Sbjct: 154 ARAVNVPVTLKMRMGWDHNSLNAPRLAKIAEESGIRLVTVHGRTRQMFYNGTADWRFVKT 213
Query: 197 VREALSVPMVANGGVKHLNDA 217
V++A+S+P++ NG + + DA
Sbjct: 214 VKDAVSLPVIVNGDINTIRDA 234
>UniRef50_A6PPM6 Cluster: Dihydrouridine synthase, DuS; n=1;
Victivallis vadensis ATCC BAA-548|Rep: Dihydrouridine
synthase, DuS - Victivallis vadensis ATCC BAA-548
Length = 343
Score = 43.2 bits (97), Expect = 0.005
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 9/193 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAAN 84
AP+ ++ + +R R FT M+ S + A + + Q
Sbjct: 21 APLSGFTDLPYRRAARAGGCRFAFTEMVDVASLTYARERSAGMLRRGPEEEFLGVQLVGA 80
Query: 85 NRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN 143
+ + A+ +V Y VD N GCP K G G L + + +
Sbjct: 81 DHEFIRRAADVVNEYEFSVVDFNLGCPVPKVAKKGAGAELGRHLDAALACFAIIAE--RS 138
Query: 144 KFSISVKIRLLN--DIKKTVILCQQLEKCGVTFLTSMEEHCTKS--SGPVDINGLKEVRE 199
+ ++ KIR+++ D T+ L + L + G +T + ++ SGPV+ ++ VRE
Sbjct: 139 RHPVTAKIRIVDAEDPAPTLALAKGLAELGAQAIT-VHGRIKEAFYSGPVNFGMIRAVRE 197
Query: 200 AL-SVPMVANGGV 211
AL V ++ANGGV
Sbjct: 198 ALPGVQVIANGGV 210
>UniRef50_A5N517 Cluster: Predicted NADH oxidase; n=1; Clostridium
kluyveri DSM 555|Rep: Predicted NADH oxidase -
Clostridium kluyveri DSM 555
Length = 328
Score = 43.2 bits (97), Expect = 0.005
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 116 KDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLN------DIKKTVILCQQLEK 169
+D YG + + +I DIVK +R + F I +++ + I+ + + QQLEK
Sbjct: 186 QDEYGGDITGRIKIHRDIVKNVREAVGESFPIFMRLGASDYMDGGLTIEDSKLAAQQLEK 245
Query: 170 CGVTFLTSMEEHCTKSSGPVDINGL-----KEVREALSVPMVANGGVKHLNDA 217
GV L C + V+ G K ++E +S+P++ GG+ H A
Sbjct: 246 TGVDVLDISGGLCRYTIPGVNEEGYFTPLSKAIKEVVSIPVIVTGGIIHAKTA 298
>UniRef50_Q2HDP2 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 641
Score = 43.2 bits (97), Expect = 0.005
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 79 AQFAANNRDDFVDASKLV---YPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVK 135
AQ AAN V A++ + P++ VDLNCGCP K G G +LL + +++
Sbjct: 311 AQIAANAPWVAVKATEALSQLLPHLRLVDLNCGCPVDAVFKSGSGSALLDSHSKLERMIR 370
Query: 136 GLRNVLPNKFSISVKIRL 153
G+ N + + I+ KIR+
Sbjct: 371 GM-NAVSGEVPITAKIRM 387
>UniRef50_A0Z3E6 Cluster: Dihydroorotate
dehydrogenase/oxidoreductase, FAD-binding protein; n=5;
Bacteria|Rep: Dihydroorotate
dehydrogenase/oxidoreductase, FAD-binding protein -
marine gamma proteobacterium HTCC2080
Length = 551
Score = 42.7 bits (96), Expect = 0.007
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 32 KVHFRTLVRNFNADLCFTPMI-LADSFCQNSKARANEFMTTTTDFPVIAQFAANNRDDFV 90
++ +R V + A CF + L + S A + F +++ F + ++FV
Sbjct: 51 RLGYREPVYSQFAPGCFVNAVGLTNPGAHASLASLGQLRVPEDRFLLVSIFGGSV-EEFV 109
Query: 91 DASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
+K++ P DG +LN CP GYG ++ P+I+++I+ ++ V+
Sbjct: 110 AVAKILEPVADGFELNLSCPH----ASGYGMAMGQDPKIVHEIIAAVKQVV 156
>UniRef50_Q582L4 Cluster: TRNA-dihydrouridine synthase 3, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 3,
putative - Trypanosoma brucei
Length = 528
Score = 42.7 bits (96), Expect = 0.007
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFA 82
V AP+ + FR + + + AD+ M + + + K+ + +++ Q A
Sbjct: 169 VLAPLTTVGNLPFRRVCKEYGADITVGEMAIVHNLNRLQKSEWSLLRRHSSEDIFGLQIA 228
Query: 83 ANNRDDFVDASKLV----YPYVDGVDLNCGCPQKWAMKDGYGCSLLS-KPEIIYDIVKGL 137
+ D + ++ V + Y D VD+NCGCP + G GC L K + D+V+ L
Sbjct: 229 VSRPHDAITWAQAVEESGFSY-DFVDINCGCPVDKVVLSGCGCGLWERKGNRLRDVVQSL 287
Query: 138 RNVLPNKFSISVKIRL 153
V +++K R+
Sbjct: 288 --VAHQSKPVTIKCRM 301
>UniRef50_Q8A2H9 Cluster: Putative nifR3 family TIM-barrel enzyme
with dihydrouridine synthase domain; n=6;
Bacteroidales|Rep: Putative nifR3 family TIM-barrel
enzyme with dihydrouridine synthase domain - Bacteroides
thetaiotaomicron
Length = 314
Score = 42.3 bits (95), Expect = 0.009
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 103 VDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN--KFSISVKIRL-LNDIKK 159
VD+N GCP K G +L PE VK L +++ + S SVK+RL +
Sbjct: 91 VDINLGCPFPLLAKRHNGSGILPYPEE----VKALLSIVTRYPQISFSVKMRLGWEQPDE 146
Query: 160 TVILCQQLEKCGVTFLTSMEEHCTKSS--GPVDINGLKEVREALSVPMVANGGVKHLND 216
+ L L + +T M K G VD+ G RE +P+V NG + +L D
Sbjct: 147 CLALAPILNDLPLRQIT-MHPRLGKQGYKGEVDLQGFSAFREVCQLPLVYNGDIHNLED 204
>UniRef50_Q83D40 Cluster: TIM-barrel protein, yjbN family; n=7;
Bacteria|Rep: TIM-barrel protein, yjbN family - Coxiella
burnetii
Length = 353
Score = 41.9 bits (94), Expect = 0.012
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM+ + HFR +R + L +T M+ + + + R ++ + + P+ Q
Sbjct: 34 APMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDY--SPEEHPLALQVGG 91
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
++ ++L D ++LN GCP + +G LL + E++ D V + +
Sbjct: 92 SDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAAMSAEV- 150
Query: 143 NKFSISVKIR 152
+SVK R
Sbjct: 151 -NIPVSVKTR 159
>UniRef50_A5FPW7 Cluster: Dihydroorotate dehydrogenase family
protein; n=21; Bacteria|Rep: Dihydroorotate
dehydrogenase family protein - Dehalococcoides sp. BAV1
Length = 324
Score = 41.9 bits (94), Expect = 0.012
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 72 TTDFPVIAQFAANNRDDFVDASKLV--YPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEI 129
T D PVI AA + +D+ + ++ + P V G+++N CP +G S S ++
Sbjct: 112 TWDVPVIVNIAAESIEDYAELARRLDKVPGVSGIEVNISCPNVKCGCIEFGSSPESAAKV 171
Query: 130 IYDIVKG------LRNVLPNKFSISVKIRLLNDIKKTVI-LCQQLEKCGVTFLTS---ME 179
D+V+ + + PN SI+ + + D I L L + +
Sbjct: 172 T-DVVRNATTLPLIVKLTPNTSSITELAKAVADAGADAISLINTLRGMRIDIKKRRPVLG 230
Query: 180 EHCTKSSGP----VDINGLKEVREALSVPMVANGGVKHLNDATTYM 221
H SGP V I+ + +V A++VP++ GG+ + DA ++
Sbjct: 231 NHTGGLSGPAIKPVAISMVYQVAGAVNVPVIGGGGIMNAEDALEFL 276
>UniRef50_Q9UTH9 Cluster: tRNA dihydrouridine synthase Dus3; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus3 - Schizosaccharomyces pombe (Fission
yeast)
Length = 617
Score = 41.9 bits (94), Expect = 0.012
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 100 VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLN 155
VD +DLNCGCP + G G SLL P + ++G+ + + + ++VK+R+ N
Sbjct: 331 VDFLDLNCGCPIDLVFRQGAGSSLLENPGRLLRNLQGM-DAVSGQIPVTVKLRMGN 385
>UniRef50_A7DKP5 Cluster: Dihydrouridine synthase, DuS; n=2;
Methylobacterium extorquens PA1|Rep: Dihydrouridine
synthase, DuS - Methylobacterium extorquens PA1
Length = 354
Score = 41.5 bits (93), Expect = 0.016
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 25 APMVRYSKVHFRTLVRNFNADL-CFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM+ ++ R R + +T M+ + + R F + P+ Q
Sbjct: 33 APMMDWTDRQCRAFHRTLSRRARLYTEMVTTGAVLHGDRERLLGF--DAYEQPLAVQLGG 90
Query: 84 NNRDDFVDASKLV--YPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVL 141
+N DD A+++ + Y + ++LN GCP +G L+ +P ++ V L+ +
Sbjct: 91 SNPDDLAAAARIAADFGYAE-INLNVGCPSDRVQDGRFGACLMREPGLVGACVAALKAAV 149
Query: 142 PNKFSISVKIRL 153
P ++VK RL
Sbjct: 150 P--VPVTVKCRL 159
>UniRef50_A4BWB1 Cluster: Putative uncharacterized protein; n=5;
Bacteroidetes|Rep: Putative uncharacterized protein -
Polaribacter irgensii 23-P
Length = 317
Score = 41.1 bits (92), Expect = 0.021
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 25 APMVRYSKVHFRTLVRNF--NADLCFTPMI-LADSFCQNSKARANEFMTTTTDFPVIAQF 81
+P+ ++ FR +F D ++P I L + + + + ++ VI Q
Sbjct: 8 SPLQGFTDYKFRNAFNHFFGGIDTFYSPYIRLNGKMVIKNSYQKDLLLENNSELEVIPQI 67
Query: 82 AANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNV 140
N+ ++F+ SK V ++ N GCP K G G L+S E I I+ + N
Sbjct: 68 ITNDAEEFLFVSKYVRALGYKELNWNLGCPYPMVTKRGMGSGLISDAEKINSILHKVHN- 126
Query: 141 LPNKFSISVKIRL 153
+ +S+K+R+
Sbjct: 127 -ESDILVSMKMRM 138
>UniRef50_A7AWB5 Cluster: Dihydrouridine synthase (Dus) domain
containing protein; n=1; Babesia bovis|Rep:
Dihydrouridine synthase (Dus) domain containing protein
- Babesia bovis
Length = 362
Score = 41.1 bits (92), Expect = 0.021
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 25 APMVRYSKVHFRTLVRNFNADL-CFTPMILADSFCQNSKARANEFM-TTTTDFPVIAQFA 82
APM+ + FR +R +T M+ S + + + P++ Q
Sbjct: 21 APMLDITYYEFRQFMRLITKRAQLWTEMMADGSLIYGDSDKVGSMLHCDANEHPIVLQLG 80
Query: 83 ANNRDDFVDASKLV--YPYVDGVDLNCGCPQ-KWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
NN D A + Y Y + +LN GCP + + K +G +L++ ++ IVK LR+
Sbjct: 81 GNNLDSLSKAGNIALGYGYTE-FNLNVGCPSTRVSGKGCFGAALMNDAPLVGRIVKHLRS 139
Query: 140 VLPNKFSISVKIRL 153
L ++VK RL
Sbjct: 140 ELGT--PVTVKHRL 151
>UniRef50_Q9PGB5 Cluster: tRNA-dihydrouridine synthase A; n=8;
Proteobacteria|Rep: tRNA-dihydrouridine synthase A -
Xylella fastidiosa
Length = 340
Score = 41.1 bits (92), Expect = 0.021
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 8/126 (6%)
Query: 29 RYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAANNRDD 88
RY +V R L + +T M+ A + + R F + + PV Q +
Sbjct: 29 RYCRVFHRVLAPSARL---YTEMVHAKAVIYGDRERLLGF--ASVEQPVALQLGGSEPAL 83
Query: 89 FVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSI 147
A+++ + ++LNCGCP +G L+ +P ++ D V + V+ +
Sbjct: 84 LAKAARIAVDWGYSEINLNCGCPSDRVQAGSFGARLMREPALVADCVAAMAAVV--SVPV 141
Query: 148 SVKIRL 153
+VK RL
Sbjct: 142 TVKCRL 147
>UniRef50_Q979G6 Cluster: Dihydroorotate dehydrogenase; n=4;
Thermoplasmatales|Rep: Dihydroorotate dehydrogenase -
Thermoplasma volcanium
Length = 301
Score = 40.7 bits (91), Expect = 0.028
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 76 PVIAQFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIV 134
P+I A N ++F S + Y VD ++LN CP G+G + S P+++ DIV
Sbjct: 94 PIIGSVFAYNAEEFTKLSVKMEEYGVDAIELNLSCPHV----KGFGLEVGSDPDLVEDIV 149
Query: 135 KGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEK 169
N + +K + V +L ++ + + + EK
Sbjct: 150 ----NEIKSKVKVPVFAKLSPNVSNIIEIAKAAEK 180
>UniRef50_Q38BB4 Cluster: TRNA-dihydrouridine synthase 2, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 2,
putative - Trypanosoma brucei
Length = 435
Score = 40.3 bits (90), Expect = 0.037
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 76 PVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKP 127
PV+ Q A+ L VDG+D+N GCP+K+++ +G G +L+ P
Sbjct: 95 PVVLQLGVAEPAIGARAALLCVDDVDGIDVNMGCPKKFSVDNGMGAALMRDP 146
>UniRef50_Q8G7W8 Cluster: Possible NifR3-like protein; n=4;
Bifidobacterium|Rep: Possible NifR3-like protein -
Bifidobacterium longum
Length = 414
Score = 39.9 bits (89), Expect = 0.049
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 9/203 (4%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQF 81
V +PM + FR + + D L MI A + ++ ++ Q
Sbjct: 50 VLSPMAGVTNWPFRVICEEYGPDGLYVAEMITARALVAHNPKALRLCHFAKSEKIRSLQL 109
Query: 82 AANNRDDFVDASKLVYP--YVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
N A+K+V D VDLN GCP + G G +L K +I ++++ +
Sbjct: 110 YGVNPSITEQAAKIVVDGNMADHVDLNFGCPVPKVTRRGGGSALPWKTDIFTELLQRVVA 169
Query: 140 VL-PNKFSISVKIRLLNDIKKTVIL----CQQLEKCGVTFLTSMEEHCTKSSGPVDINGL 194
V P ++ KIR+ D L Q E C L + G D + +
Sbjct: 170 VCEPAGIPVTAKIRVGIDHNHETFLEAGHIAQEEGCKAVTLHA-RTTAEYYGGHSDWSRI 228
Query: 195 KEVREALSVPMVANGGVKHLNDA 217
E++E L++P+ NG + DA
Sbjct: 229 GELKEHLNIPVFGNGDIWGAEDA 251
>UniRef50_Q0C0N1 Cluster: Putative tRNA-dihydrouridine synthase;
n=1; Hyphomonas neptunium ATCC 15444|Rep: Putative
tRNA-dihydrouridine synthase - Hyphomonas neptunium
(strain ATCC 15444)
Length = 345
Score = 39.9 bits (89), Expect = 0.049
Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 9/193 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPV---IAQF 81
APM + R +F A + M+ + +KARA+ T I Q
Sbjct: 26 APMSGATDAPMRRQAVHFGAPAVVSEMVAGEML---AKARADVVRRTCRHEGAGYWIVQL 82
Query: 82 AANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIV-KGLRN 139
AA +D + + L+ VD +D+N GCP K G +L+ + +I+ L+
Sbjct: 83 AARRPEDMLAGAVLMAEAGVDVIDINMGCPSKQVTGGQSGSALMRDLPLAGEIIDAALQG 142
Query: 140 VLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT-SMEEHCTKSSGPVDINGLKEVR 198
++ +++ ++ L + GV LT C +G + ++
Sbjct: 143 AAGRPVTLKMRLGWDDENLNAPELAVMAQDRGVQMLTVHGRTRCQFYTGGANWAAVRATV 202
Query: 199 EALSVPMVANGGV 211
+A+S+P++ NG +
Sbjct: 203 DAVSLPVIVNGDI 215
>UniRef50_Q6C4K3 Cluster: Similar to DEHA0D12364g Debaryomyces
hansenii; n=1; Yarrowia lipolytica|Rep: Similar to
DEHA0D12364g Debaryomyces hansenii - Yarrowia lipolytica
(Candida lipolytica)
Length = 622
Score = 39.9 bits (89), Expect = 0.049
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKAR------ANEFMTTTTDFP 76
+ +P+ + +R L+++ AD+ + M L Q KA + +T F
Sbjct: 250 IVSPLTTVGNLPYRRLMKDLGADVTYGEMALTLPLIQGHKAEWALTRCHSSEVTEGNHFG 309
Query: 77 VIAQFAANNRDDFVDASKLVYPYVDGV---DLNCGCPQKWAMKDGYGCSLLSKPEIIYDI 133
V Q A + A++ V G+ +LNCGCP + G G +L+ + I
Sbjct: 310 V--QVTAPKHWQAIKAAQAVSELCTGISEINLNCGCPIDLVYRQGAGSALMDQQGKTARI 367
Query: 134 VKGLRNVLPNKFSISVKIR 152
V+G+ +++ I+VK+R
Sbjct: 368 VRGM-SMVSGDVPITVKMR 385
>UniRef50_Q7PVV7 Cluster: ENSANGP00000016833; n=2;
Endopterygota|Rep: ENSANGP00000016833 - Anopheles
gambiae str. PEST
Length = 594
Score = 39.5 bits (88), Expect = 0.065
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 100 VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN---KFSISVKIRLLND 156
VD +DLN GCP G G +LL + ++ +V+ +L + +F++ +I + N+
Sbjct: 327 VDFIDLNTGCPIDLIFNQGGGSALLRRQNVLKVMVQSCSRLLADYGKEFTVKTRIGIYNN 386
Query: 157 IKKTVILCQQLEKCGVTFLT----SMEEHCTKSSGPVDINGLKE-VREALSVPMVANGGV 211
+ + E G + +T + E+ TK + D L++ +A SVP+ NG +
Sbjct: 387 KLIAHEMVPKFEDWGASLITIHGRTKEQRYTKRA---DWEYLQQCATQAQSVPVFGNGDI 443
>UniRef50_Q9K9W1 Cluster: Dihydroorotate dehydrogenase; n=1;
Bacillus halodurans|Rep: Dihydroorotate dehydrogenase -
Bacillus halodurans
Length = 305
Score = 39.5 bits (88), Expect = 0.065
Identities = 37/171 (21%), Positives = 80/171 (46%), Gaps = 31/171 (18%)
Query: 74 DFPVIAQFAANNRDDFVDASKLV--YPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIY 131
D P++A A + +D+V+ ++ + V ++LN CP +K+G G + + P++
Sbjct: 93 DVPIVANIAGSTVNDYVEVAEAISRVDNVHALELNISCPN---VKEG-GIAFGTVPDVAA 148
Query: 132 DIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCG------VTFLTSMEEHCTKS 185
+ + ++ V ++ V ++L ++ V + Q +E+ G + L M +
Sbjct: 149 QLTQEVKRV----STVPVYVKLSPNVSDIVEMAQAVERAGADGLSMINTLLGMRLDLKRR 204
Query: 186 -----------SG----PVDINGLKEVREALSVPMVANGGVKHLNDATTYM 221
SG PV I + +V +A+S+P++ GG++ +D +M
Sbjct: 205 TPILANGTGGLSGPAIKPVAIRMIYQVSQAVSIPIIGMGGIQSADDVLEFM 255
>UniRef50_Q73P17 Cluster: Dihydroorotate
dehydrogenase/oxidoreductase, FAD-binding; n=1;
Treponema denticola|Rep: Dihydroorotate
dehydrogenase/oxidoreductase, FAD-binding - Treponema
denticola
Length = 591
Score = 39.1 bits (87), Expect = 0.085
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 73 TDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYD 132
TD + +A+N +DF+ K D +LN CP A G+G S+ P I +
Sbjct: 106 TDSILNVSLSASNPEDFISLLKGFEELADCFELNFSCPHASA---GFGASIGCDPAIAAE 162
Query: 133 IVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSM 178
VK ++ LP+ ++ + ++L +++ + + + G +T++
Sbjct: 163 YVKIIKKALPD-CAVPIFVKLTPNVEDIGAIASAVIEAGADGITAI 207
>UniRef50_Q090Q9 Cluster: TRNA-dihydrouridine synthase B; n=2;
Cystobacterineae|Rep: TRNA-dihydrouridine synthase B -
Stigmatella aurantiaca DW4/3-1
Length = 369
Score = 39.1 bits (87), Expect = 0.085
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 23 VCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQ-NSKARANEFMTTTTDFPVIAQF 81
+ APM S+ FR + + A LC T ++ A + N + + + P Q
Sbjct: 46 ILAPMAGVSERPFRVIAFKWGAALCPTELVSAQGLMRANQRTLKYLRFSPEVERPYSLQI 105
Query: 82 AANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKP 127
+ A+ + + +D+N GCP K K+G G +L+ +P
Sbjct: 106 FGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSALMCEP 152
>UniRef50_A6GGZ7 Cluster: Putative uncharacterized protein; n=2;
Bacteria|Rep: Putative uncharacterized protein -
Plesiocystis pacifica SIR-1
Length = 362
Score = 39.1 bits (87), Expect = 0.085
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 25 APMVRYSKVHFRTLVRNFNAD-LCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAA 83
APM+ + HFR L+R L +T M+ + + + + + P+ Q
Sbjct: 26 APMMDRTDRHFRRLMRLITRHTLLYTEMVTCPAVLHGDREHILGYHPS--EHPLALQLGG 83
Query: 84 NNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLP 142
++ + +++ D V++N GCP +G L+ P + D V +R +
Sbjct: 84 DDPEALAACARIAAELGYDEVNINVGCPSDRVQSGNFGVCLMKDPARVRDCVVAMREAV- 142
Query: 143 NKFSISVKIRL 153
+ ++VK R+
Sbjct: 143 -ELPVTVKHRI 152
>UniRef50_A5KKR3 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus torques ATCC 27756|Rep: Putative
uncharacterized protein - Ruminococcus torques ATCC
27756
Length = 211
Score = 39.1 bits (87), Expect = 0.085
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 78 IAQFAANNRDDFVDASKLVYPY-VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
+ Q N +DFV +K + Y ++LN GCP K + G G L+ PE + D+
Sbjct: 62 VPQILTNCAEDFVQTAKKLEQYGYKEINLNVGCPSKTVVTKGRGAGFLAFPERL-DLF-- 118
Query: 137 LRNVLPN-KFSISVKIRL 153
L V N ISVK R+
Sbjct: 119 LEEVFQNCPIDISVKTRI 136
>UniRef50_Q4Q669 Cluster: Dihydrouridine synthase (Dus), putative;
n=3; Leishmania|Rep: Dihydrouridine synthase (Dus),
putative - Leishmania major
Length = 661
Score = 39.1 bits (87), Expect = 0.085
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 101 DGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPNKFSISVKIRLLN 155
D VD+N GCPQ A + YG L+ E+I+ IV L L + ++VKIR+ +
Sbjct: 282 DAVDVNLGCPQGIARRGHYGSFLMEDWELIHTIVHTLHVEL--EVPVTVKIRVFD 334
Score = 35.5 bits (78), Expect = 1.1
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 26 PMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARAN 66
PMV S++ FR L R + A + +TPM+ A SF + R++
Sbjct: 119 PMVDQSELPFRMLCRQYGATVAYTPMLHAKSFADGAVYRSH 159
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.323 0.136 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,893,814
Number of Sequences: 1657284
Number of extensions: 8958832
Number of successful extensions: 18308
Number of sequences better than 10.0: 294
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 17835
Number of HSP's gapped (non-prelim): 340
length of query: 222
length of database: 575,637,011
effective HSP length: 98
effective length of query: 124
effective length of database: 413,223,179
effective search space: 51239674196
effective search space used: 51239674196
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 70 (32.3 bits)
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