GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000375-TA|BGIBMGA000375-PA|IPR001269|Dihydrouridine
synthase, DuS
         (222 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   4.4  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   7.7  

>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 133 IVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLE 168
           IV  L+    N F +   +   NDI   +ILC   E
Sbjct: 91  IVTILKKTKSNIFILKESVDTFNDIFGWIILCNIFE 126


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 72  TTDFPVIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGY 119
           T  +  + +F  N   ++ D  K+ Y Y D + +    P+  A+K  Y
Sbjct: 290 TLGYNELCEFHKNGIIEWDDTQKVPYLYDDTLWVGFDNPKSVALKAQY 337


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,458
Number of Sequences: 317
Number of extensions: 1997
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 222
length of database: 114,650
effective HSP length: 54
effective length of query: 168
effective length of database: 97,532
effective search space: 16385376
effective search space used: 16385376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 42 (21.0 bits)