GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000375-TA|BGIBMGA000375-PA|IPR001269|Dihydrouridine
synthase, DuS
         (222 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21323-13|AAA62547.2|  284|Caenorhabditis elegans Hypothetical p...   174   4e-44
Z81077-3|CAB03067.1|  527|Caenorhabditis elegans Hypothetical pr...   122   3e-28
AL032643-4|CAA21662.1|  436|Caenorhabditis elegans Hypothetical ...    83   2e-16
AF125451-6|AAD12825.1|  554|Caenorhabditis elegans Hypothetical ...    58   4e-09
AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical...    29   2.0  
U53341-7|AAC69111.3|  744|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL132848-4|CAB60387.1|  331|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden...    28   6.1  

>U21323-13|AAA62547.2|  284|Caenorhabditis elegans Hypothetical
           protein C45G9.2 protein.
          Length = 284

 Score =  174 bits (424), Expect = 4e-44
 Identities = 85/192 (44%), Positives = 130/192 (67%), Gaps = 1/192 (0%)

Query: 27  MVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQFAANNR 86
           MVRYSK+ FR LVR ++ D+CFTPMI A +F ++ K R++E      D P+I QFA ++ 
Sbjct: 1   MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDP 60

Query: 87  DDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRNVLPN-KF 145
               +A+++VY    GVDLNCGCP+      G+G +LLSKPE++ D+V+  R  +P+  F
Sbjct: 61  FVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120

Query: 146 SISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTKSSGPVDINGLKEVREALSVPM 205
           S+S+KIR+ +DI+KTV LC++ E  GVT LT      ++ + P+DI  L+ V++++SVP+
Sbjct: 121 SVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEPIDIQALRIVKDSVSVPI 180

Query: 206 VANGGVKHLNDA 217
           +ANGG+    +A
Sbjct: 181 IANGGITTREEA 192


>Z81077-3|CAB03067.1|  527|Caenorhabditis elegans Hypothetical
           protein F36A2.2 protein.
          Length = 527

 Score =  122 bits (293), Expect = 3e-28
 Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 7/211 (3%)

Query: 17  NKTYLKVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFP 76
           N+   KV APMV  S++ FR   R + A L FTPMI A  F  +   R N       D P
Sbjct: 70  NQRITKVLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRP 129

Query: 77  VIAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKG 136
           ++ QF AN  D F+ A +LV    DGVDLN GCPQ  A +  YG  L  + ++I ++V  
Sbjct: 130 LVVQFCANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSA 189

Query: 137 LRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLT---SMEEHCTKSSGPVDING 193
           +R+    +  IS KIR+ +D ++TV   ++L   G T LT      +     +G  D + 
Sbjct: 190 VRDYC--RLPISCKIRVRDDRQQTVEYAKRLVDAGATMLTVHGRTRDMKGAETGLADWSR 247

Query: 194 LKEVREALS--VPMVANGGVKHLNDATTYMK 222
           +++V EA+   VP++ANG ++   D    M+
Sbjct: 248 IRDVVEAVGSRVPVMANGNIQFPGDVERCMQ 278


>AL032643-4|CAA21662.1|  436|Caenorhabditis elegans Hypothetical
           protein Y54E5A.6 protein.
          Length = 436

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 20/205 (9%)

Query: 22  KVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTT-----DFP 76
           K+ APMVR  +   R L   + ADLC+T  I+     + ++   NE + T       D  
Sbjct: 9   KILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRV-VNEALGTIDYRNGDDII 67

Query: 77  V----------IAQFAANNRDDFVDASKLVYPYVDGVDLNCGCPQKWAMKDGYGCSLLSK 126
           +          I Q   N+ +     +++V   V G+D+N GCP+ +++  G G +LL++
Sbjct: 68  LRLAPEEKGRCILQIGTNSGEKAAKIAQIVGDDVAGIDVNMGCPKPFSIHCGMGAALLTQ 127

Query: 127 PEIIYDIVKGLRNVLPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFL-TSMEEHCTKS 185
            E I DI+  L++    K  ++ KIR+L+D + T+ L Q++EKC V+ L         + 
Sbjct: 128 TEKIVDILTSLKSAA--KVPVTCKIRVLDDPEDTLKLVQEIEKCRVSALGVHGRRRDERQ 185

Query: 186 SGPVDINGLKEVREAL-SVPMVANG 209
                I+ +++V +A+ S+P+++NG
Sbjct: 186 PDKCRIDEIRDVAQAVQSIPVISNG 210


>AF125451-6|AAD12825.1|  554|Caenorhabditis elegans Hypothetical
           protein Y37E11B.5 protein.
          Length = 554

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 22  KVCAPMVRYSKVHFRTLVRNFNADLCFTPMILADSFCQNSKARANEFMTTTTDFPVIAQF 81
           K  AP+     + FR +  ++ AD+    M LA S    + +  +       +     Q 
Sbjct: 206 KYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGTASEYSLLKRHPCEKIFGVQL 265

Query: 82  AANNRDDFVDASKLVYPY--VDGVDLNCGCPQKWAMKDGYGCSLLSKPEIIYDIVKGLRN 139
           A    D    AS++V     VD +D+N GCP     + G GC+L S+P+ +++++   ++
Sbjct: 266 AGGFADTMAKASQIVVENFDVDFIDINMGCPIDVVNQKGGGCALPSRPQKLFEVLAATKS 325

Query: 140 VLPNKFSISVKIR 152
           VL     ++VKIR
Sbjct: 326 VLGGCCPLTVKIR 338


>AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical
           protein Y54E10A.16a protein.
          Length = 427

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 1   MKEICDIMEKFADAKINKTYLKV---CAPMVRYSKVHFRTLVRNFNADLCFTPMI 52
           +K ICD+   F + + NK Y+K      P V      +    R   AD CF  ++
Sbjct: 364 VKSICDVWPDFNERERNKQYIKTEMNQVPNVNQEPYAYEYFFRRCFADKCFNHLL 418


>U53341-7|AAC69111.3|  744|Caenorhabditis elegans Hypothetical
           protein F49E10.1 protein.
          Length = 744

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 141 LPNKFSISVKIRLLNDIKKTVILCQQLEKCGVTFLTSMEEHCTK--SSGPVDINGLKEVR 198
           +P K +  VK+ LL+D + +V L  Q+E+CG        +  T     G  + +   +  
Sbjct: 127 MPAKPADEVKVSLLSDEESSVSLDIQIEECGTAVPVKQVKRPTTLVPYGQQEDHSFNDAL 186

Query: 199 EALSVPMVANGGVKHLND 216
              S+ ++ +  +KH N+
Sbjct: 187 GVPSINVIPHTPIKHENN 204


>AL132848-4|CAB60387.1|  331|Caenorhabditis elegans Hypothetical
           protein Y47H10A.5 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 168 EKCGVTFLTSMEEHCTKSSGPVDINGLKEVREALSVPMVANGGVKH 213
           E     F  + E HCTK+  P++ N  + VR+A+ +  +  G   H
Sbjct: 118 ESVNQNFGAAFEHHCTKTDDPINEN--EPVRKAVMIAEIPRGKGVH 161


>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence of
            males (increasedx chromosome loss) protein 1, isoform a
            protein.
          Length = 1281

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 89   FVDASKLVYPYVDGVDLNCGCPQK 112
            F+ A  +  PY+DG+  NC  P K
Sbjct: 1136 FLGADNMEEPYLDGIQYNCVAPGK 1159


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,554,846
Number of Sequences: 27539
Number of extensions: 224761
Number of successful extensions: 504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 9
length of query: 222
length of database: 12,573,161
effective HSP length: 79
effective length of query: 143
effective length of database: 10,397,580
effective search space: 1486853940
effective search space used: 1486853940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)