Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000374-TA|BGIBMGA000374-PA|IPR003653|Peptidase C48,
SUMO/Sentrin/Ubl1, IPR009792|Protein of unknown function DUF1358
         (674 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    26   0.73 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          26   0.73 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    24   3.9  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    24   3.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   6.8  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 26.2 bits (55), Expect = 0.73
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 311 SPLENKIEPQQCCSKNEPIKQPCILIFDSLAGASRSRVVATLRDYLTCEYHVKVS 365
           SP E  + PQ   S N    + C  +++   G+S+      ++D  TC+Y  + S
Sbjct: 154 SPNEASMSPQSTSSNNSASPKACQFLYNQFPGSSQ----VVVKDE-TCQYDTESS 203


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 26.2 bits (55), Expect = 0.73
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 311 SPLENKIEPQQCCSKNEPIKQPCILIFDSLAGASRSRVVATLRDYLTCEYHVKVS 365
           SP E  + PQ   S N    + C  +++   G+S+      ++D  TC+Y  + S
Sbjct: 174 SPNEASMSPQSTSSNNSASPKACQFLYNQFPGSSQ----VVVKDE-TCQYDTESS 223


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 420 WFDEIVVTRKREEISNLLKSLMNKYNP 446
           W D   V RK +EIS L KS++   +P
Sbjct: 231 WTDVSNVKRKSKEISKLPKSMLAISDP 257


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 420 WFDEIVVTRKREEISNLLKSLMNKYNP 446
           W D   V RK +EIS L KS++   +P
Sbjct: 231 WTDVSNVKRKSKEISKLPKSMLAISDP 257


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 462 GKLIESEDNEECLEGERGNQNSIKKSEK 489
           GKL   E N+E  +G+ G    I+K +K
Sbjct: 129 GKLSSFESNDETKDGKVGLYERIQKLKK 156


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,968
Number of Sequences: 317
Number of extensions: 6336
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 674
length of database: 114,650
effective HSP length: 61
effective length of query: 613
effective length of database: 95,313
effective search space: 58426869
effective search space used: 58426869
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)