Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000374-TA|BGIBMGA000374-PA|IPR003653|Peptidase C48,
SUMO/Sentrin/Ubl1, IPR009792|Protein of unknown function DUF1358
         (674 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   4.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   6.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 14/47 (29%), Positives = 18/47 (38%)

Query: 473 CLEGERGNQNSIKKSEKDLETATLTFVKQIPSELVKRSFGDPSDGTI 519
           C    R N  S    + +L  A+L+   Q P     R    PSD  I
Sbjct: 536 CPHRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDSGI 582


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 19  GPYYDPMSKTDPYRRITLLPEIITEEAKVALNTLFGKVTDELN 61
           GP YDPM+   P  ++  +  +   +A V    + G     +N
Sbjct: 552 GPSYDPMAVVSPRLKVHGIRGLRVADASVQPQVISGNPVASVN 594


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,982
Number of Sequences: 429
Number of extensions: 8360
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 2
length of query: 674
length of database: 140,377
effective HSP length: 62
effective length of query: 612
effective length of database: 113,779
effective search space: 69632748
effective search space used: 69632748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)