GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000374-TA|BGIBMGA000374-PA|IPR003653|Peptidase C48,
SUMO/Sentrin/Ubl1, IPR009792|Protein of unknown function DUF1358
         (674 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48045-3|CAA88104.1|  342|Caenorhabditis elegans Hypothetical pr...    72   2e-12
U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like ...    68   2e-11
U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like ...    50   5e-06
AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to SU...    50   5e-06
AF043699-2|AAB97567.1|  311|Caenorhabditis elegans Ubiquitin-lik...    44   3e-04
Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical pr...    35   0.16 
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    35   0.16 
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    35   0.16 
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    33   0.50 
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    33   0.50 
L16621-2|ABD63201.1|  168|Caenorhabditis elegans Hypothetical pr...    31   2.0  
Z54235-7|CAA90974.3|  611|Caenorhabditis elegans Hypothetical pr...    30   6.1  
Z78198-11|CAH04700.1|  579|Caenorhabditis elegans Hypothetical p...    29   8.1  
Z78198-10|CAB01568.1|  569|Caenorhabditis elegans Hypothetical p...    29   8.1  
Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical pr...    29   8.1  
Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical pr...    29   8.1  
AF083654-1|AAC32865.1|  569|Caenorhabditis elegans putative pota...    29   8.1  

>Z48045-3|CAA88104.1|  342|Caenorhabditis elegans Hypothetical
           protein C41C4.6 protein.
          Length = 342

 Score = 71.7 bits (168), Expect = 2e-12
 Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 116 IPINTEDYMCLAQDQFLNDVIIDFYLKYLVHDVLTHNQREKTHIFSTFFYKRLTTKPSKF 175
           I I   D+ CL +   LND +IDFYL ++V  VL  +      +  + F+  L+ +   F
Sbjct: 131 IAIRISDFCCLQEKDLLNDTMIDFYLNHIVEHVLPDSNGSNVTVLPSIFWHNLSLRQHAF 190

Query: 176 NKSSNPHEWDSNLTPAQKRHARVRTWTKNVNIFEKDYVVVPINENCHWFVAIICFPSLDG 235
           +  S   +  S+      +   +  +  + ++ + DY+VVP+NE  HW +A+IC P    
Sbjct: 191 D--SEDEKMMSDEQKMDLKFGDLHDFVADFDLQDFDYIVVPVNEWEHWSLAVICHPFTAQ 248

Query: 236 CRSMLDNRTVT 246
            R+++ +  +T
Sbjct: 249 ARTVIFDSQLT 259



 Score = 31.1 bits (67), Expect = 2.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 381 KIPQQNNFTDCGLYLLQYVEQFFKDPITD 409
           ++PQQ N  DCG+++ ++  +F   P  D
Sbjct: 299 RMPQQTNNFDCGIFIAEFARRFLLSPPKD 327


>U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like
           protease protein 2 protein.
          Length = 893

 Score = 68.1 bits (159), Expect = 2e-11
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)

Query: 101 PDIKQILIYPP------GKGGIPINTEDYMCLAQDQFLNDVIIDFYLKYLVHDVLTHNQR 154
           P   Q+  +PP      G   + +  +D   L + +FLND ++ F L Y+   +L+    
Sbjct: 518 PPDTQLFTFPPSGSCTTGMDPVVLLVKDIKTLDRKEFLNDSVMAFMLNYIAF-MLSSELM 576

Query: 155 EKTHIFSTFFYKRLTT--KPSKFNKSSNPHEWDSNLTPAQKRHARVRTWTKNVNIFEKDY 212
           +  H+ +TF +  LT    P  F+K   P E   ++   +    RV  WT+  ++  KDY
Sbjct: 577 KSVHMCNTFLFVNLTRLLPPLCFSKR-RPIE-PEHIKIVKDNCPRVLRWTRKFDVLAKDY 634

Query: 213 VVVPINENCHWFVAIICFPS 232
           +++PINE+ HW V  +  PS
Sbjct: 635 IIIPINEDLHWLVIAVINPS 654



 Score = 33.9 bits (74), Expect = 0.38
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 383 PQQNNFTDCGLYLLQYVEQFF---KDPITDYTLPIKQLTNWFDEI--VVTRKREEISNLL 437
           P Q+NF DCGLY+L ++E  F     P+     P    + +F E   +    R+++ NL+
Sbjct: 735 PIQDNFYDCGLYVLHFIEGLFCYPNRPVNVNDFPNFDWSKFFPEANKMCDLMRDKVYNLI 794

Query: 438 KSLMNK 443
               +K
Sbjct: 795 LQQADK 800


>U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like
           protease protein 1 protein.
          Length = 697

 Score = 50.0 bits (114), Expect = 5e-06
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 22/113 (19%)

Query: 116 IPINTEDYMCLAQDQFLNDVIIDFYLKYLVHDVLTHNQREKTHIFSTFFYKRLTTKPSKF 175
           I I  +D   L+   +LND II+FYL+ +       ++  K + F+TFFY  + +K    
Sbjct: 501 IQICKKDLATLSGLHWLNDEIINFYLQLICDRSNGDSKYPKIYAFNTFFYSNIVSKG--- 557

Query: 176 NKSSNPHEWDSNLTPAQKRHARVRTWTKNVNIFEKDYVVVPINENCHWFVAII 228
                              +A V+ WT+ V+IF  D V+VP++   HW +A+I
Sbjct: 558 -------------------YASVKRWTRKVDIFAFDIVLVPVHLGMHWCMAVI 591



 Score = 30.7 bits (66), Expect = 3.5
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 334 ILIFDSLAGASRSRVVATLRDYLTCEYHVKVSPLKIFNKDNIKGSCLKIPQQNNFTDCGL 393
           I  +DSL   + + V+  LR YL  E   K      F+   I+     IP+Q N +DCG+
Sbjct: 598 IEFYDSLYDGNTA-VLPALRGYLEAESLDKKKTAMNFSGWTIQ-QMTDIPRQQNGSDCGV 655

Query: 394 YLLQYVE 400
           +  Q+ E
Sbjct: 656 FSCQFGE 662


>AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to
           SUMO-1-specific protease protein.
          Length = 697

 Score = 50.0 bits (114), Expect = 5e-06
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 22/113 (19%)

Query: 116 IPINTEDYMCLAQDQFLNDVIIDFYLKYLVHDVLTHNQREKTHIFSTFFYKRLTTKPSKF 175
           I I  +D   L+   +LND II+FYL+ +       ++  K + F+TFFY  + +K    
Sbjct: 501 IQICKKDLATLSGLHWLNDEIINFYLQLICDRSNGDSKYPKIYAFNTFFYSNIVSKG--- 557

Query: 176 NKSSNPHEWDSNLTPAQKRHARVRTWTKNVNIFEKDYVVVPINENCHWFVAII 228
                              +A V+ WT+ V+IF  D V+VP++   HW +A+I
Sbjct: 558 -------------------YASVKRWTRKVDIFAFDIVLVPVHLGMHWCMAVI 591



 Score = 30.7 bits (66), Expect = 3.5
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 334 ILIFDSLAGASRSRVVATLRDYLTCEYHVKVSPLKIFNKDNIKGSCLKIPQQNNFTDCGL 393
           I  +DSL   + + V+  LR YL  E   K      F+   I+     IP+Q N +DCG+
Sbjct: 598 IEFYDSLYDGNTA-VLPALRGYLEAESLDKKKTAMNFSGWTIQ-QMTDIPRQQNGSDCGV 655

Query: 394 YLLQYVE 400
           +  Q+ E
Sbjct: 656 FSCQFGE 662


>AF043699-2|AAB97567.1|  311|Caenorhabditis elegans Ubiquitin-like
           protease protein 5 protein.
          Length = 311

 Score = 44.4 bits (100), Expect = 3e-04
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 132 LNDVIIDFYL-KYLVHDVLTHNQREKTHIFSTFFYKRLTTKPSKFNKSSNPHEWDSNLTP 190
           LND II+FY+  ++  +V     R  +H+F +FF  ++ T    F K + P    S L  
Sbjct: 50  LNDTIIEFYMCDWMRLEVFDEATRASSHVFHSFFLPKIKTCFKDF-KENPPRR--SELAN 106

Query: 191 AQKRHARVRTWTKNVNIFEKDYVVVPI--NENCHWFVAIICFPSLDGCRSMLDNRTVTPQ 248
              R  R +   +     +KD +++P+  ++  HWF+ I+  PS  G    + +  +   
Sbjct: 107 HYNRFFRSKNDAE--TFLKKDILLIPVHLDKPKHWFLVIVHNPS--GAVRRISDVNILDA 162

Query: 249 EIRKKERRSSLQI 261
             + K RR S +I
Sbjct: 163 TNKVKSRRLSRRI 175



 Score = 37.5 bits (83), Expect = 0.031
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 379 CLKIPQQNNFTDCGLYLLQYVEQFFKDPITDYTLPIKQLTN 419
           C K+PQQ N  DCG++++ + E F K      +LP   L +
Sbjct: 242 CQKLPQQKNSVDCGIFMMAFAEYFTKYNTAWQSLPTDALAD 282


>Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical
           protein T23F6.4 protein.
          Length = 872

 Score = 35.1 bits (77), Expect = 0.16
 Identities = 15/42 (35%), Positives = 29/42 (69%)

Query: 461 NGKLIESEDNEECLEGERGNQNSIKKSEKDLETATLTFVKQI 502
           +G++IE E+  + +E E   ++S K+SEK++E+ +  FVK +
Sbjct: 607 DGEVIEEEEKPKEVEAEDKKKSSKKQSEKEIESGSTLFVKNL 648


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 35.1 bits (77), Expect = 0.16
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 363 KVSPLKIFNKDNIKGSCLKIPQQNN-FTDCGLYLLQYVEQFFKDPITDYTLP 413
           K SPLK  N +   GSC+++  QN+ F+    Y +QY  Q   +  T+ T+P
Sbjct: 229 KPSPLKEVNINQNAGSCVEVSWQNDEFSGADFYTIQYSLQSTPNNSTNMTIP 280


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 35.1 bits (77), Expect = 0.16
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 363 KVSPLKIFNKDNIKGSCLKIPQQNN-FTDCGLYLLQYVEQFFKDPITDYTLP 413
           K SPLK  N +   GSC+++  QN+ F+    Y +QY  Q   +  T+ T+P
Sbjct: 229 KPSPLKEVNINQNAGSCVEVSWQNDEFSGADFYTIQYSLQSTPNNSTNMTIP 280


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 33.5 bits (73), Expect = 0.50
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 10/148 (6%)

Query: 399 VEQFFKDPITDYTLPIKQLTNWFD--EIVVT--RKREEISNLLKSLMN-KYNPDSHLTLP 453
           + QFF + ++ ++   +++T + D  E+V++   KR  I + L   +    +P S++ + 
Sbjct: 620 IMQFFNEELSTHSCCYRRIT-YIDVAELVLSVFSKRIFIQHFLDDTLRLTSDPVSNIRIR 678

Query: 454 DITF-PTLNGKLIESEDNEECLEGERGNQNSIKKSEKDLETATLTFVKQIPSELVK-RSF 511
            I F P +  KLI  ED E  L+ E   +  +K +E  L   T   + Q   EL +  + 
Sbjct: 679 AIKFLPKIKSKLILPEDEEVLLKIENSVKEQLKSTE--LNGPTRALINQAAVELSRCETC 736

Query: 512 GDPSDGTIVRKTIRIASDIENRSLVQMK 539
            D  D   V +   + S  + +S  + K
Sbjct: 737 SDSEDNKKVNEEEELWSKKKEKSKKESK 764


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 33.5 bits (73), Expect = 0.50
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 10/148 (6%)

Query: 399 VEQFFKDPITDYTLPIKQLTNWFD--EIVVT--RKREEISNLLKSLMN-KYNPDSHLTLP 453
           + QFF + ++ ++   +++T + D  E+V++   KR  I + L   +    +P S++ + 
Sbjct: 620 IMQFFNEELSTHSCCYRRIT-YIDVAELVLSVFSKRIFIQHFLDDTLRLTSDPVSNIRIR 678

Query: 454 DITF-PTLNGKLIESEDNEECLEGERGNQNSIKKSEKDLETATLTFVKQIPSELVK-RSF 511
            I F P +  KLI  ED E  L+ E   +  +K +E  L   T   + Q   EL +  + 
Sbjct: 679 AIKFLPKIKSKLILPEDEEVLLKIENSVKEQLKSTE--LNGPTRALINQAAVELSRCETC 736

Query: 512 GDPSDGTIVRKTIRIASDIENRSLVQMK 539
            D  D   V +   + S  + +S  + K
Sbjct: 737 SDSEDNKKVNEEEELWSKKKEKSKKESK 764


>L16621-2|ABD63201.1|  168|Caenorhabditis elegans Hypothetical
           protein ZK688.11 protein.
          Length = 168

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 429 KREEISNLLKSLMNKYNPDSHLTLPDITFPTLNGKLIESEDNEECLEGERGNQNS 483
           K EE+ +++  +M K N   HL     T   L  K    +D++E L   R +++S
Sbjct: 54  KNEEMFSMISKIMQKPNSTGHLQWDSQTLADLMNKSDSFDDDQESLNMPRSSESS 108


>Z54235-7|CAA90974.3|  611|Caenorhabditis elegans Hypothetical
           protein C09G9.4 protein.
          Length = 611

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 385 QNNFTDCGLYLLQYVEQFFKDPITDYTLPIKQLTNWFDEIVVTRKREEISNLLKSL 440
           +N F  C   ++Q++  +F +      +P   + +    + V  K EE++ +LK L
Sbjct: 116 KNEFIKCMSLVVQFINDYFDESHKQPVIPENDVNSSRIHVKVPEKAEELTEILKDL 171


>Z78198-11|CAH04700.1|  579|Caenorhabditis elegans Hypothetical
           protein F55C5.3b protein.
          Length = 579

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 17/75 (22%), Positives = 33/75 (44%)

Query: 422 DEIVVTRKREEISNLLKSLMNKYNPDSHLTLPDITFPTLNGKLIESEDNEECLEGERGNQ 481
           D+ +V  + +   +  K  MN+   +   +LP       N K  ++ D +  +E E   +
Sbjct: 8   DDKIVAGRSKSADSKWKDRMNRGLGNMSKSLPSFNKNAANAKSDKTSDTKVVIEDESKKK 67

Query: 482 NSIKKSEKDLETATL 496
              KK +K+L+   L
Sbjct: 68  KKKKKKDKNLDVEEL 82


>Z78198-10|CAB01568.1|  569|Caenorhabditis elegans Hypothetical
           protein F55C5.3a protein.
          Length = 569

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 17/75 (22%), Positives = 33/75 (44%)

Query: 422 DEIVVTRKREEISNLLKSLMNKYNPDSHLTLPDITFPTLNGKLIESEDNEECLEGERGNQ 481
           D+ +V  + +   +  K  MN+   +   +LP       N K  ++ D +  +E E   +
Sbjct: 8   DDKIVAGRSKSADSKWKDRMNRGLGNMSKSLPSFNKNAANAKSDKTSDTKVVIEDESKKK 67

Query: 482 NSIKKSEKDLETATL 496
              KK +K+L+   L
Sbjct: 68  KKKKKKDKNLDVEEL 82


>Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical
           protein T21E8.3 protein.
          Length = 1243

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 461 NGKLIESEDNEECLEGERGNQNSIKKSEKDLETATLTFVKQIPSELVKRSFGDPSDGTIV 520
           NGK+ E   +EE +  +R   N ++    D ++       Q   E+++++  + +DG  +
Sbjct: 591 NGKIAEVGSHEELISMDREYSNLVRAQFFDSQSVEEDINGQGAEEVIQKTPPNLNDGEPL 650

Query: 521 RKTIR-IASDIENRSLVQMKPELIK--KAGAFLASVTGISALI 560
            + ++  +SDIE +S +    E+++  +  AFL S+  I + I
Sbjct: 651 EELLKETSSDIEIKSNIW---EVLRECRPDAFLLSMAVIGSAI 690


>Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical
           protein T21E8.3 protein.
          Length = 1243

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 461 NGKLIESEDNEECLEGERGNQNSIKKSEKDLETATLTFVKQIPSELVKRSFGDPSDGTIV 520
           NGK+ E   +EE +  +R   N ++    D ++       Q   E+++++  + +DG  +
Sbjct: 591 NGKIAEVGSHEELISMDREYSNLVRAQFFDSQSVEEDINGQGAEEVIQKTPPNLNDGEPL 650

Query: 521 RKTIR-IASDIENRSLVQMKPELIK--KAGAFLASVTGISALI 560
            + ++  +SDIE +S +    E+++  +  AFL S+  I + I
Sbjct: 651 EELLKETSSDIEIKSNIW---EVLRECRPDAFLLSMAVIGSAI 690


>AF083654-1|AAC32865.1|  569|Caenorhabditis elegans putative
           potassium channel subunitn2P24 protein.
          Length = 569

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 17/75 (22%), Positives = 33/75 (44%)

Query: 422 DEIVVTRKREEISNLLKSLMNKYNPDSHLTLPDITFPTLNGKLIESEDNEECLEGERGNQ 481
           D+ +V  + +   +  K  MN+   +   +LP       N K  ++ D +  +E E   +
Sbjct: 8   DDKIVAGRSKSADSKWKDRMNRGLGNMSKSLPSFNKNAANAKSDKTSDTKVVIEDESKKK 67

Query: 482 NSIKKSEKDLETATL 496
              KK +K+L+   L
Sbjct: 68  KKKKKKDKNLDVEEL 82


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,398,176
Number of Sequences: 27539
Number of extensions: 699266
Number of successful extensions: 1829
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1806
Number of HSP's gapped (non-prelim): 24
length of query: 674
length of database: 12,573,161
effective HSP length: 86
effective length of query: 588
effective length of database: 10,204,807
effective search space: 6000426516
effective search space used: 6000426516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)