Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000373-TA|BGIBMGA000373-PA|undefined
         (405 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.29 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.38 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   3.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   3.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.1 bits (57), Expect = 0.29
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 95   PQQHQQNLGYTQHYQQQPITYDQSHVPQHPQPLTQRXXXXXXXXXXXRQVALYNGQRMVL 154
            PQQ QQ     Q  QQQP    QS  PQ  QP  Q+           +Q   Y     ++
Sbjct: 1505 PQQQQQ-----QQQQQQP--QQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLV 1557

Query: 155  TEYKRLQQTPQNIISQQSRETGRQ 178
             + +R   +  N   +Q+    +Q
Sbjct: 1558 VQLQRGYNSGNNRSGEQANSQQQQ 1581



 Score = 25.4 bits (53), Expect = 0.87
 Identities = 14/36 (38%), Positives = 15/36 (41%)

Query: 76   QQFNTPPPNMRQNHVPGPAPQQHQQNLGYTQHYQQQ 111
            QQ   P    +Q     P PQQ QQ     Q  QQQ
Sbjct: 1512 QQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQ 1547



 Score = 23.0 bits (47), Expect = 4.7
 Identities = 13/44 (29%), Positives = 16/44 (36%)

Query: 82  PPNMRQNHVPGPAPQQHQQNLGYTQHYQQQPITYDQSHVPQHPQ 125
           PP+ + +H     PQ   Q     Q  QQQ     Q    Q  Q
Sbjct: 809 PPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQ 852



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 95  PQQHQQNLGYTQHYQQQPITYD 116
           PQQ QQ     Q  Q+ P+T D
Sbjct: 841 PQQQQQQQQQQQQQQRGPMTND 862



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 14/50 (28%), Positives = 16/50 (32%)

Query: 76   QQFNTPPPNMRQNHVPGPAPQQHQQNLGYTQHYQQQPITYDQSHVPQHPQ 125
            Q+     P  +Q       PQQ  Q     Q   QQ     Q   PQ  Q
Sbjct: 1498 QKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQ 1547



 Score = 22.2 bits (45), Expect = 8.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 46  NNANDMDDLEESITAAIVQKHPVTDGV 72
           +NA D D  +E      + + PVT G+
Sbjct: 329 SNATDTDGTKERTEEVALDRTPVTQGL 355


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 26.6 bits (56), Expect = 0.38
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 76  QQFNTPPPNMRQNHVPGPAPQQHQQNLGYTQHYQQQPITYDQSHVPQHPQP 126
           QQ +       Q+ +    PQQ QQ     Q  QQQ     Q H P   +P
Sbjct: 421 QQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQ-QQQQQHWPMEEEP 470



 Score = 25.8 bits (54), Expect = 0.66
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 94  APQQHQQNLGYTQHY--QQQPITYDQSHVPQHPQPLTQR 130
           A QQHQQ    TQH    QQP    Q    Q  Q   Q+
Sbjct: 420 AQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQ 458



 Score = 22.2 bits (45), Expect = 8.1
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 96  QQHQQNLGYTQHYQQQPITYDQSHVPQHPQPLTQR 130
           +Q QQ     QH QQQ  T    HV    QP  Q+
Sbjct: 413 EQQQQMQAQQQHQQQQQQT---QHVINAQQPQQQQ 444


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 98  HQQNLGYTQHYQQQPITYDQSHVPQHPQPL 127
           H++ LG    Y  Q   Y+  H P  P+ L
Sbjct: 48  HREGLGRRHRYNFQLKPYNPEHKPPGPKDL 77


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 98  HQQNLGYTQHYQQQPITYDQSHVPQHPQPL 127
           H++ LG    Y  Q   Y+  H P  P+ L
Sbjct: 49  HREGLGRRHRYNFQLKPYNPEHKPPGPKDL 78


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 303 SSTSSPNVMSQTQSSEMSTPEKSNSNDHVNNSPESPGQ 340
           S + SP++++ +Q  +    EKS +N H N   E   Q
Sbjct: 41  SRSPSPSLLT-SQPHQDHNKEKSKNNHHCNQDTEKLNQ 77


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 349 DGMLALCKSCGYTGFNFSKCERCKRVFTEE 378
           DG + +     +  F  SKC  C+R F E+
Sbjct: 255 DGQIMVDYEDEFDEFGDSKCSLCQRRFEEQ 284


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.125    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,170
Number of Sequences: 429
Number of extensions: 5247
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 18
length of query: 405
length of database: 140,377
effective HSP length: 59
effective length of query: 346
effective length of database: 115,066
effective search space: 39812836
effective search space used: 39812836
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)