Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000371-TA|BGIBMGA000371-PA|IPR000618|Insect cuticle
protein
         (303 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    25   0.91 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.9  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 152 SKPSSSTVKPFTITPSQNERISLLPVQENQRNINKRTRERDPVVPIIESENYI 204
           S PS+   KP   TP   + +        QR     T E  P   +   +N +
Sbjct: 417 STPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVSTTEAPPAPAVSNPQNEV 469


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 184  INKRTRERDPVVPIIESENYIYSHKGNFHYS 214
            +N RTR   P+VP  E    + S+    H S
Sbjct: 1482 LNPRTRGEKPIVPSAEKFIEVSSNSITLHLS 1512


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short
          gastrulation protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 4  LFCLLVVTSLASSDNSSQDEGFRT 27
          LFC+LV  + A +     D+G RT
Sbjct: 6  LFCVLVTLATARNKAPLLDDGTRT 29


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,545
Number of Sequences: 317
Number of extensions: 2784
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 303
length of database: 114,650
effective HSP length: 57
effective length of query: 246
effective length of database: 96,581
effective search space: 23758926
effective search space used: 23758926
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)