Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000371-TA|BGIBMGA000371-PA|IPR000618|Insect cuticle
protein
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.13 |skb5||Shk1 kinase binding protein 5|Schizosaccharo...    31   0.15 
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    30   0.36 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    27   3.3  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   3.3  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   4.4  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   5.8  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   5.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   7.7  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    26   7.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    26   7.7  

>SPCC24B10.13 |skb5||Shk1 kinase binding protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 197 IIESENYIYSHKGNFHYSYEGGDGTKAFEQGELRRFDDDTAGETVSGSFSYKDRDGNDFS 256
           ++   +Y+Y      HY +      +  E+ E  RF DDT  ET+ GS   +  D  D  
Sbjct: 10  LVVGRDYLYPPDHELHYGFHA----RVIEEEE-ERFVDDTFDETIEGSDDSESID--DTE 62

Query: 257 LSYTADEN 264
           + Y A+E+
Sbjct: 63  VFYDAEES 70


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
          Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 684

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 14 ASSDNSSQDEGFRTIAAYNFNHPPNVDYNPLPVDVVYEQ 52
          A S +S  D  F++ + +N +HP N + N LP D    Q
Sbjct: 43 AKSASSCSDLLFKSFSKFNKHHPLNEESNDLPSDAAIHQ 81


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 128  NRIVTRKPSKGRRRQQQETIGPLKSKPSSST 158
            N I+ R  S+GRRR  Q+ + PLKS   S T
Sbjct: 1713 NTILRRNNSRGRRRMLQQ-MSPLKSNKFSGT 1742


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 27  TIAAYNFNHPPNVDYNPLPVDVVYEQKKLEEKSSDDVITTTXXXXXXXXXXXXTKEDTST 86
           TI  YN   P N+D     V+  ++    EE+  +D+++T             T  +T +
Sbjct: 376 TIQTYN---PQNIDLEDEAVEKEWQDLVAEEQKVEDIVSTLGNVSLKTPSDTFTLTNTDS 432

Query: 87  ESLNFKTE 94
           +    K E
Sbjct: 433 DKKTSKPE 440


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 127 KNRIVTRKPSKGRRRQQQETIGPLKSKPSSSTVKPFTITPSQNERISLL-PVQENQRNIN 185
           K R   RKP  GR R++++       K ++ST +   IT S N+  + +  + E++R+  
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTKQKDLITVSHNKGTTAIEDLDEDKRSKT 598

Query: 186 K 186
           K
Sbjct: 599 K 599


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 159 VKPFTITPSQNERISLLPVQENQRNINKRTRERDPVVP 196
           ++PF   P++++++     +  +RNI KR  +RDP  P
Sbjct: 944 IEPFF--PAEDKKLITNIRKTQERNIRKRAMKRDPAKP 979


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 150 LKSKPSSSTVKPFTITPSQNERISLLPVQENQRNINKRTRE 190
           L S P     K   +   +   I LL  ++  RN+NK TRE
Sbjct: 3   LASLPLEKLTKVADVDKRETIYIDLLNYEKQLRNLNKNTRE 43


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 204 IYSHKGNFHYSYEGGDGTKAFEQGELRRFDDD 235
           +Y+ K N  Y Y G DG K F    +   D D
Sbjct: 269 VYNPKDNCIYLYGGWDGVKTFSDFWIYNVDKD 300


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 219 DGTKAFEQGELRRFDDDTAGETVSGSFSYKDRDGNDFSLSYTADENGYRPV 269
           DG  A E GE    DD+   E   G     D D ND S     DE   R V
Sbjct: 19  DGYPA-ENGEGTNVDDNNNEEEKDGIPLDNDNDENDSSEESATDEEAERQV 68


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 141 RQQQETIGPLKSKPSSSTVKPFTITPSQNERISLLPVQENQ 181
           ++++E   P  S PS+ + KP T  P    + S  P++E++
Sbjct: 208 QEKKEEFAPSSSTPSADSAKPETTNPPPQPQAS-EPMEEDK 247


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/64 (18%), Positives = 28/64 (43%)

Query: 106 TVQSVTVANAFKVQVDDTIVGKNRIVTRKPSKGRRRQQQETIGPLKSKPSSSTVKPFTIT 165
           T QS+ +       + + I    ++VT++ +  +R+  +E++   K +      K    +
Sbjct: 243 TSQSIAIPLWNNPNLKELIASSRKVVTKETASSKRKSDEESLPSQKKQKKVEVAKESKDS 302

Query: 166 PSQN 169
             QN
Sbjct: 303 KQQN 306


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,667
Number of Sequences: 5004
Number of extensions: 59465
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 11
length of query: 303
length of database: 2,362,478
effective HSP length: 72
effective length of query: 231
effective length of database: 2,002,190
effective search space: 462505890
effective search space used: 462505890
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 54 (25.8 bits)