Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000371-TA|BGIBMGA000371-PA|IPR000618|Insect cuticle
protein
         (303 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y12026-1|CAA72757.1|   93|Homo sapiens immunoglobulin heavy chai...    33   1.2  
AK091496-1|BAC03677.1|  824|Homo sapiens protein ( Homo sapiens ...    31   5.0  
BC031222-1|AAH31222.1|  429|Homo sapiens serum response factor b...    31   6.6  
BC017102-1|AAH17102.1|  314|Homo sapiens SRFBP1 protein protein.       31   6.6  
AY611630-1|AAU25829.2|  429|Homo sapiens SRF-dependent transcrip...    31   6.6  
AK058015-1|BAB71631.1|  427|Homo sapiens protein ( Homo sapiens ...    31   6.6  
AF155648-1|AAF67005.1| 1212|Homo sapiens putative zinc finger pr...    31   6.6  

>Y12026-1|CAA72757.1|   93|Homo sapiens immunoglobulin heavy chain
           protein.
          Length = 93

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 194 VVPIIESENYIYSHKGNFHYSYEGGDGTKAFEQGELRRFDDDTAGETVSGSFSYKDRDGN 253
           ++PI  + NY+   +G    + +    T   E   LR   +DTA    +G   Y D  G 
Sbjct: 27  IIPIFGTSNYVQKFQGRVTITADKSTSTAYMELSSLR--SEDTAVYYCAG--GYYDSSGF 82

Query: 254 DFSLSYTAD 262
            FS SY  D
Sbjct: 83  SFSYSYGVD 91


>AK091496-1|BAC03677.1|  824|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34177 fis, clone FCBBF3016451, highly similar to
           RETINAL-CADHERIN PRECURSOR. ).
          Length = 824

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 19/61 (31%), Positives = 27/61 (44%)

Query: 138 GRRRQQQETIGPLKSKPSSSTVKPFTITPSQNERISLLPVQENQRNINKRTRERDPVVPI 197
           G +  Q ET  P          K   + PS   + +LLP  ++Q     R R+RD V+P 
Sbjct: 24  GTKGTQYETSSPHSGHKPQKGKKVVALDPSPPPKDTLLPWPQHQNANGLRRRKRDWVIPP 83

Query: 198 I 198
           I
Sbjct: 84  I 84


>BC031222-1|AAH31222.1|  429|Homo sapiens serum response factor
           binding protein 1 protein.
          Length = 429

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 14/144 (9%)

Query: 114 NAFKVQVDDTIVGKNRIV-TRKPSKGRRRQQQETIGPLKSKPSSSTVKPFTITPSQNERI 172
           N   +Q + T++ + ++  T+  +K      +E I  ++  P + T+      PS+ + +
Sbjct: 154 NGSNLQREATVISEQKVKETKILAKKPIHNSKEKIAKMEHGPKAVTIANSPSKPSEKDSV 213

Query: 173 SLLPVQENQRNINKRTRERDPVVPIIESENYIYSHKGNFHYSYEGGDGTKAFEQGELRRF 232
             L   E+Q+          P  P +++ +    +KG+        DG + F + E   F
Sbjct: 214 VSL---ESQKT---------PADPKLKTLSQTKKNKGSDSSLSGNSDGGEEFCEEEKEYF 261

Query: 233 DDDTAGETVSGSFSYKDRD-GNDF 255
           DD T       S   +D D G+DF
Sbjct: 262 DDSTEERFYKQSSMSEDSDSGDDF 285


>BC017102-1|AAH17102.1|  314|Homo sapiens SRFBP1 protein protein.
          Length = 314

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 14/144 (9%)

Query: 114 NAFKVQVDDTIVGKNRIV-TRKPSKGRRRQQQETIGPLKSKPSSSTVKPFTITPSQNERI 172
           N   +Q + T++ + ++  T+  +K      +E I  ++  P + T+      PS+ + +
Sbjct: 39  NGSNLQREATVISEQKVKETKILAKKPIHNSKEKIAKMEHGPKAVTIANSPSKPSEKDSV 98

Query: 173 SLLPVQENQRNINKRTRERDPVVPIIESENYIYSHKGNFHYSYEGGDGTKAFEQGELRRF 232
             L   E+Q+          P  P +++ +    +KG+        DG + F + E   F
Sbjct: 99  VSL---ESQKT---------PADPKLKTLSQTKKNKGSDSSLSGNSDGGEEFCEEEKEYF 146

Query: 233 DDDTAGETVSGSFSYKDRD-GNDF 255
           DD T       S   +D D G+DF
Sbjct: 147 DDSTEERFYKQSSMSEDSDSGDDF 170


>AY611630-1|AAU25829.2|  429|Homo sapiens SRF-dependent
           transcription regulation associated protein protein.
          Length = 429

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 14/144 (9%)

Query: 114 NAFKVQVDDTIVGKNRIV-TRKPSKGRRRQQQETIGPLKSKPSSSTVKPFTITPSQNERI 172
           N   +Q + T++ + ++  T+  +K      +E I  ++  P + T+      PS+ + +
Sbjct: 154 NGSNLQREATVISEQKVKETKILAKKPIHNSKEKIAKMEHGPKAVTIANSPSKPSEKDSV 213

Query: 173 SLLPVQENQRNINKRTRERDPVVPIIESENYIYSHKGNFHYSYEGGDGTKAFEQGELRRF 232
             L   E+Q+          P  P +++ +    +KG+        DG + F + E   F
Sbjct: 214 VSL---ESQKT---------PADPKLKTLSQTKKNKGSDSSLSGNSDGGEEFCEEEKEYF 261

Query: 233 DDDTAGETVSGSFSYKDRD-GNDF 255
           DD T       S   +D D G+DF
Sbjct: 262 DDSTEERFYKQSSMSEDSDSGDDF 285


>AK058015-1|BAB71631.1|  427|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25286 fis, clone STM06909. ).
          Length = 427

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 14/144 (9%)

Query: 114 NAFKVQVDDTIVGKNRIV-TRKPSKGRRRQQQETIGPLKSKPSSSTVKPFTITPSQNERI 172
           N   +Q + T++ + ++  T+  +K      +E I  ++  P + T+      PS+ + +
Sbjct: 154 NGSNLQREATVISEQKVKETKILAKKPIHNSKEKIAKMEHGPKAVTIANSPSKPSEKDSV 213

Query: 173 SLLPVQENQRNINKRTRERDPVVPIIESENYIYSHKGNFHYSYEGGDGTKAFEQGELRRF 232
             L   E+Q+          P  P +++ +    +KG+        DG + F + E   F
Sbjct: 214 VSL---ESQKT---------PADPKLKTLSQTKKNKGSDSSLSGNSDGGEEFCEEEKEYF 261

Query: 233 DDDTAGETVSGSFSYKDRD-GNDF 255
           DD T       S   +D D G+DF
Sbjct: 262 DDSTEERFYKQSSMSEDSDSGDDF 285


>AF155648-1|AAF67005.1| 1212|Homo sapiens putative zinc finger
           protein protein.
          Length = 1212

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 11/75 (14%)

Query: 134 KPSKGRRRQQQETI-------GPLKSKPSSSTVKPFTITPSQNERISLLPVQENQRNINK 186
           KPS G   QQ   +       G   SKP+S+ VKP  I P+    ++ L       N+NK
Sbjct: 663 KPSLGTMVQQSSPVLEPAAVCGEAPSKPASN-VKP--ICPANTSPLNWL-ADLTSGNVNK 718

Query: 187 RTRERDPVVPIIESE 201
             +E+   +PI+++E
Sbjct: 719 ENKEKQLTMPILKNE 733


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.311    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,854,986
Number of Sequences: 224733
Number of extensions: 1690738
Number of successful extensions: 3351
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3350
Number of HSP's gapped (non-prelim): 7
length of query: 303
length of database: 73,234,838
effective HSP length: 90
effective length of query: 213
effective length of database: 53,008,868
effective search space: 11290888884
effective search space used: 11290888884
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 65 (30.3 bits)