Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000371-TA|BGIBMGA000371-PA|IPR000618|Insect cuticle
protein
(303 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0761 - 24984386-24984606,24984702-24984845,24986155-249863... 33 0.28
08_02_0418 + 16908077-16908156,16908307-16908595,16908686-16908955 31 1.5
11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604 29 3.5
11_01_0306 + 2301575-2302480 29 4.6
07_03_1629 - 28246440-28247339 29 4.6
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 29 6.1
02_01_0353 + 2545982-2549833 29 6.1
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 28 8.1
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 28 8.1
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834... 28 8.1
>01_05_0761 -
24984386-24984606,24984702-24984845,24986155-24986393,
24986601-24986704,24987046-24987120,24987257-24987304,
24988836-24988880
Length = 291
Score = 33.1 bits (72), Expect = 0.28
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 2/131 (1%)
Query: 144 QETIGPLKSKPSSSTVKPFTITPSQNERISLLPVQENQRNINKRTRERDPVVPIIESENY 203
Q + P SS+ V ++ T + + +E +R +N + +R P+ II + Y
Sbjct: 115 QAGVPPCSDCQSSAAVACYSATARRRSTPTYAAAEEKKRVVNCVSIQRPPIEDIIHASAY 174
Query: 204 IYSHKGNFH-YSYEGGDGTKAFEQGELRRFDD-DTAGETVSGSFSYKDRDGNDFSLSYTA 261
I + FH + G + L DD D G SG R + ++ Y
Sbjct: 175 IGPVQLCFHVHGTPAGIAEISLRDTTLAPIDDQDVKGHFGSGEEEIFRRQVVNSNVVYME 234
Query: 262 DENGYRPVGAH 272
+ G P+G +
Sbjct: 235 QKYGRGPLGVY 245
>08_02_0418 + 16908077-16908156,16908307-16908595,16908686-16908955
Length = 212
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 134 KPSKGRRRQQQETIGPLKSKPSSSTVK---PFTITPSQNER------ISLLPVQENQRNI 184
+P K RR+ E G K S V+ + P N+R L P Q+ QR
Sbjct: 51 RPPKSRRKAPHEVQGKHGLKMSKHGVEMHCKYCNEPGHNQRGCKLKKTGLRPTQQPQRAA 110
Query: 185 NKRTRERDPVVPIIESENYIYSH 207
E DP+ P +S+ + +H
Sbjct: 111 TTTVEESDPISPEAQSQPHFPTH 133
>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
Length = 259
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 131 VTRKPSKG-RRRQQQETIGPLKSKPSSSTVKP 161
VT+KPSKG +R++ ++T P SK ++KP
Sbjct: 102 VTKKPSKGTKRKKLEKTKKPKDSKKPDDSMKP 133
>11_01_0306 + 2301575-2302480
Length = 301
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 217 GGDGTKAFEQGELRRFDDDTAGETVSG---SFSYKD 249
GG G E GE+R DDD G G S SY+D
Sbjct: 73 GGSGQGGAEHGEVRNGDDDDGGGFAMGAVESHSYED 108
>07_03_1629 - 28246440-28247339
Length = 299
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 205 YSHKGNFHYSYEGGDGTKAFEQGELRRFDD----DTAGETVSGSFSYKDRDGNDFSLSYT 260
Y H + H+ + G + A GE D ++S S DR+G+DF S
Sbjct: 140 YGHHHHHHHHHGHGAASGASSVGECSTMPVMVPVDPHRSSMSSSLLDMDRNGHDFLFSGA 199
Query: 261 ADENGY 266
D +GY
Sbjct: 200 DDNSGY 205
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 141 RQQQETIG-PLKSKPSSSTVKPFTITPSQNERISLLPVQENQRNINKRTRERDPV 194
R+ ++T+G ++S P S +PF +P +NE +++ + Q N E V
Sbjct: 208 RRHKQTLGIVVESSPQQSIPQPFDASPVRNEDATMVEAECGQVQTNATESESSAV 262
>02_01_0353 + 2545982-2549833
Length = 1283
Score = 28.7 bits (61), Expect = 6.1
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 82 EDTSTESLNFKTELKPKGRSLFDGTVQSVTVANAFKVQVDDTIVGKNRIVTRKPSKGRRR 141
ED + E + + + P R L T +V A+ + DD + K++ + + RRR
Sbjct: 61 EDDAPED-DSEAAVNPAARRLASYTGHAVAAADIPRAAEDDGLPKKSQRIIDREDDYRRR 119
Query: 142 QQQETIGPLKSKP---SSSTVKPFTITPSQNERISLLPVQENQ--RNINKRTRERD 192
+ I P + P +T P T + R + L Q+ Q R+I ++ +E +
Sbjct: 120 RLARIISPERHDPFAAGEATPDPSVRTYADAMRENDLQKQKEQLLRDIAQKKKEEE 175
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/50 (22%), Positives = 29/50 (58%)
Query: 155 SSSTVKPFTITPSQNERISLLPVQENQRNINKRTRERDPVVPIIESENYI 204
S ++P++ TP ++ER++ + +Q +++K R + ++E E+ +
Sbjct: 696 SKRRIEPYSHTPRRSERLAAINGGRHQHSVSKAQRVLMKKLRVVEDESKV 745
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 127 KNRIVTRKPSKGRRRQQQETIGPLKSKPSSST 158
KN + RKP GR++++++ K+KP T
Sbjct: 172 KNHVAKRKPPPGRKKKKRKPSRVSKAKPKKPT 203
>02_04_0546 -
23782400-23782599,23782744-23782830,23782923-23783442,
23783801-23784000,23784457-23784561,23784923-23785020,
23785168-23785271
Length = 437
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 89 LNFKTELKPKGRSLFDGTVQSV-TVANAFKVQVDDTIVGKNRIVTRKPSKG 138
L F +E K K V V T+ N F+V + + GKN +VT G
Sbjct: 161 LQFVSECKTKNYPRIQTVVNKVGTITNEFRVPQFEILAGKNDMVTEVKQYG 211
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.130 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,320,071
Number of Sequences: 37544
Number of extensions: 350588
Number of successful extensions: 635
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 10
length of query: 303
length of database: 14,793,348
effective HSP length: 82
effective length of query: 221
effective length of database: 11,714,740
effective search space: 2588957540
effective search space used: 2588957540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 60 (28.3 bits)
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