GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000371-TA|BGIBMGA000371-PA|IPR000618|Insect cuticle
protein
         (303 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28840.1 68415.m03506 ankyrin repeat family protein contains ...    33   0.31 
At1g24265.2 68414.m03061 expressed protein                             32   0.55 
At1g24265.1 68414.m03060 expressed protein                             32   0.55 
At4g17620.1 68417.m02636 glycine-rich protein                          29   3.8  
At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1) domain...    29   5.1  
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    28   6.7  
At3g46840.1 68416.m05084 subtilase family protein contains simil...    28   6.7  
At1g06730.1 68414.m00715 pfkB-type carbohydrate kinase family pr...    28   6.7  
At4g39840.1 68417.m05645 expressed protein                             28   8.9  

>At2g28840.1 68415.m03506 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 456

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 151 KSKPSSSTVKPFTITPSQNERISLLPVQENQRNINKRTRERDPVVPIIESENYIYSHKGN 210
           K  P++STV P  + P     I+ L V +N  N N++++  D VV +      + S K  
Sbjct: 351 KPNPTTSTVTP-PVCPFCRSTIACLVVAQNNNNNNEKSKSLDDVVVVDREAGDVSSSKFR 409

Query: 211 FH 212
            H
Sbjct: 410 KH 411


>At1g24265.2 68414.m03061 expressed protein
          Length = 348

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 154 PSSSTVKPFTITPSQNERISLLPVQENQRNINKRTRERDPVVPIIESENYIYSHKGNFHY 213
           PSS T+     +P +++  S   V +  R + + T+    +  I ES +   SH  + + 
Sbjct: 255 PSSKTLSLPPASPDESQSPSTPNVAQKSRGLLQHTQSMSGLKDINESSS---SHNTSSNG 311

Query: 214 SYEGGDGTKAFEQGELRRF 232
            Y GG+G      G L RF
Sbjct: 312 IYFGGNGASGSSSGVLGRF 330


>At1g24265.1 68414.m03060 expressed protein
          Length = 348

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 154 PSSSTVKPFTITPSQNERISLLPVQENQRNINKRTRERDPVVPIIESENYIYSHKGNFHY 213
           PSS T+     +P +++  S   V +  R + + T+    +  I ES +   SH  + + 
Sbjct: 255 PSSKTLSLPPASPDESQSPSTPNVAQKSRGLLQHTQSMSGLKDINESSS---SHNTSSNG 311

Query: 214 SYEGGDGTKAFEQGELRRF 232
            Y GG+G      G L RF
Sbjct: 312 IYFGGNGASGSSSGVLGRF 330


>At4g17620.1 68417.m02636 glycine-rich protein
          Length = 544

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 214 SYEGGDGTKAFEQGELRRFDDDTAGETVSGSFSYKDRDGNDFSLSYTADENG 265
           S  GGDG     +G+    D  +A ++ SGS   K+  G+D   SY +++NG
Sbjct: 50  SAAGGDG-----EGDGGGADSGSASDSGSGSSGGKEEHGDDKVESYRSNDNG 96


>At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 666

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 146 TIGPLKSKPSSSTVKPFTITPSQNERISLLPVQENQRNINKRTRERDPVVPIIESENYIY 205
           +IG   S PS+S + P  +  S+++RI     Q    N+  + R+ D  V ++ +   + 
Sbjct: 273 SIGSSSSSPSTSNLPPIRVRVSEDQRIEEQLAQMTFSNMQTQ-RQFDDGVSLMANRPMMI 331

Query: 206 ----SHKGNFHYSYEGGDGTKAFEQGELRRFDD 234
                +     Y+   GDGT     G +   DD
Sbjct: 332 PPGAMNDAAMAYNNAPGDGTAPASNGHVSPEDD 364


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 234 DDTAGETVSGSFSYKDRDGNDFSLSYTADEN-GYRPVGAH 272
           DDT+ + ++   S++D DG   SL Y   EN  YR   AH
Sbjct: 24  DDTSTDDITLLNSHRDGDGGVNSLDYEVIENYAYREEQAH 63


>At3g46840.1 68416.m05084 subtilase family protein contains
          similarity to prepro-cucumisin GI:807698 from [Cucumis
          melo];
          Length = 738

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 4  LFCLLVVTSLASSDNSSQDEGFRTIAAYNFNHPPNVDYNPLPVDVVYEQKKLEEKSSDDV 63
          +F LLVV S AS+D   QD+  +    Y    P  VDY P+       Q    E S +D 
Sbjct: 14 IFALLVV-SFASADKDDQDK--QEYIVYMGALPARVDYMPMSHHTSILQDVTGESSIEDR 70

Query: 64 ITTTXXXXXXXXXXXXTKED 83
          +               TK +
Sbjct: 71 LVRNYKRSFNGFAARLTKSE 90


>At1g06730.1 68414.m00715 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 488

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 94  ELKPKGRSLFDGTVQSVTVANAFKVQVDDTI 124
           ++ PKG  L   T  SV+VA AFKV+V DT+
Sbjct: 336 KMGPKGSILV--TKSSVSVAPAFKVEVVDTV 364


>At4g39840.1 68417.m05645 expressed protein
          Length = 451

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 52  QKKLEEKSSDDVITTTXXXXXXXXXXXXTKEDTSTESLNFKTELKPKGRSLFDGTVQSVT 111
           Q KL +  S    T              + +  ST+S +  T+   + + L  GT  + +
Sbjct: 94  QTKLLKPISSSSSTKNQTKLAKTTTMGTSHKLNSTKSSSNTTKTSSELKKLNSGTKSTNS 153

Query: 112 VANAFK-VQVDDTIVGKNRIVTRKPSK------GRRRQQQETIGPLKSKPSSSTVKPFTI 164
            ++  K   +  +   KN+   + PS         ++ Q  +    KSK S   +KPF +
Sbjct: 154 TSSIKKSADLSKSSSSKNKTTIKPPSSKLSSPPSEKKSQPSSKPVTKSKQSEKEIKPFWL 213

Query: 165 TPSQNE 170
              ++E
Sbjct: 214 DDEEDE 219


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,994,521
Number of Sequences: 28952
Number of extensions: 306647
Number of successful extensions: 699
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 9
length of query: 303
length of database: 12,070,560
effective HSP length: 81
effective length of query: 222
effective length of database: 9,725,448
effective search space: 2159049456
effective search space used: 2159049456
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 59 (27.9 bits)