Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000370-TA|BGIBMGA000370-PA|undefined
         (73 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27459| Best HMM Match : fn3 (HMM E-Value=1.4e-23)                   28   0.94 
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   0.94 
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)           28   1.2  
SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07)           28   1.2  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       27   2.9  
SB_43985| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  
SB_36989| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  
SB_8502| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.8  

>SB_27459| Best HMM Match : fn3 (HMM E-Value=1.4e-23)
          Length = 262

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 35  DKDGKLVNRVMMYNLQDV 52
           DKDGKL N + +Y L+DV
Sbjct: 91  DKDGKLSNTLTLYTLEDV 108


>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 35   DKDGKLVNRVMMYNLQDV 52
            DKDGKL N + +Y L+DV
Sbjct: 1514 DKDGKLSNTLTLYTLEDV 1531


>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 1541

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 9    RVLIINGENFLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQDVASFIENYLNPEI 64
            R LI   EN + S+P  VENL  +   ++    N ++M   Q +     N+ +P++
Sbjct: 1204 RTLITEAENIVNSRPLTVENLS-DPLAEEPLTPNHLLMLKTQVILPPPGNFEHPDL 1258


>SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07)
          Length = 245

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 15  GENFLRSKPKKVENLCYEEY--DKDGKLVNRVMMYNLQDVASFIENYLN 61
           GE  +    +++E LC+E+Y  +K G+L+ +   Y    +    E Y N
Sbjct: 144 GEQKIAELEQEIERLCFEQYKLEKKGELLYKRKDYFESKIEDLQERYRN 192


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 34   YDKDGK-LVNRVMMYNLQDVASFIENYLNPEICY 66
            Y KDG+ +++    YN  D+ S IEN   P + Y
Sbjct: 3705 YSKDGQNVIDLKKHYNKDDLISSIENISYPNLSY 3738


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 22   KPKKVENLCYEEYDKDGKLVNRVMMYNLQDV--ASFIENYL 60
            KP+ V + C  +YD DG + N     N++ +   SF++++L
Sbjct: 2187 KPEAVGDKCMADYDGDGVVDNDDACPNVKHITKTSFLDHFL 2227


>SB_43985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 37  DGKLVNRVMMYNLQDVASFIENYLNPEIC 65
           D K+ ++V+   L D+  F++ +L+  IC
Sbjct: 75  DSKICSKVLCNRLVDILPFLDFHLSSSIC 103


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/46 (34%), Positives = 20/46 (43%)

Query: 18 FLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQDVASFIENYLNPE 63
          F  SK K+  N  Y   D+D  L +    YN    AS    YL P+
Sbjct: 39 FFTSKKKRHNNNSYTASDQDAYLQHTTDPYNNSYTASDQVAYLLPD 84


>SB_36989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 16  ENFLRSKPKKVENL---CYEEYDKDGKLVNRVMMY-NLQDV 52
           +  +RSKPKK EN    C+ +  K    VNR  ++  L D+
Sbjct: 784 DKHVRSKPKKRENFLFSCFVDLKKAFDKVNRSKLFRKLSDI 824


>SB_8502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 19  LRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQ 50
           ++  P K E    +E+DK  K    V++YN+Q
Sbjct: 172 MKYSPFKTEQDLLDEFDKLNKTGTLVVVYNMQ 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.140    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,092
Number of Sequences: 59808
Number of extensions: 89082
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 10
length of query: 73
length of database: 16,821,457
effective HSP length: 51
effective length of query: 22
effective length of database: 13,771,249
effective search space: 302967478
effective search space used: 302967478
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)