GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000370-TA|BGIBMGA000370-PA|undefined
         (73 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05586 Cluster: Glutamate [NMDA] receptor subunit zeta-...    38   0.040
UniRef50_UPI00006CB136 Cluster: cation channel family protein; n...    34   0.49 
UniRef50_Q2NJU9 Cluster: Putative uncharacterized protein; n=3; ...    33   0.85 
UniRef50_Q07878 Cluster: Vacuolar protein sorting-associated pro...    33   0.85 
UniRef50_Q9AW23 Cluster: DNA-directed RNA polymerase II; n=1; Gu...    32   2.0  
UniRef50_Q4T628 Cluster: Chromosome undetermined SCAF8972, whole...    31   4.5  
UniRef50_Q182D7 Cluster: Probable ATP-dependent helicase; n=4; C...    31   4.5  
UniRef50_A6TLW3 Cluster: S-layer domain protein precursor; n=1; ...    31   4.5  
UniRef50_Q7RLB1 Cluster: Rhoptry protein; n=3; Plasmodium (Vinck...    31   6.0  
UniRef50_A7MHJ7 Cluster: Putative uncharacterized protein; n=1; ...    30   7.9  

>UniRef50_Q05586 Cluster: Glutamate [NMDA] receptor subunit zeta-1
           precursor; n=89; Euteleostomi|Rep: Glutamate [NMDA]
           receptor subunit zeta-1 precursor - Homo sapiens (Human)
          Length = 938

 Score = 37.9 bits (84), Expect = 0.040
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 9   RVLIINGENFLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQDVASFIENYLNPEICYGK 68
           +++ I+ E F+  KP   +  C EE+  +G  V +V+     D +     +  P+ CYG 
Sbjct: 399 KIVTIHQEPFVYVKPTLSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGF 458

Query: 69  CV 70
           C+
Sbjct: 459 CI 460


>UniRef50_UPI00006CB136 Cluster: cation channel family protein; n=1;
           Tetrahymena thermophila SB210|Rep: cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 1088

 Score = 34.3 bits (75), Expect = 0.49
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 13  INGENFLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQDVASFIE--NYLNPEICYG 67
           ++GENFL+S P+K+    Y+EY   G+++  + ++++     F++  + L  E  YG
Sbjct: 538 LSGENFLQSIPQKLRQQVYQEY--YGRILQEIKLFSMNFSKDFLQSLSVLMKEKTYG 592


>UniRef50_Q2NJU9 Cluster: Putative uncharacterized protein; n=3;
           Aster yellows witches'-broom phytoplasma AYWB|Rep:
           Putative uncharacterized protein - Aster yellows
           witches'-broom phytoplasma (strain AYWB)
          Length = 285

 Score = 33.5 bits (73), Expect = 0.85
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 12  IINGENFLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQDVASFIENY 59
           IIN E +     K ++ +   EYDK+GK+V +  +YN     +FIE Y
Sbjct: 240 IINKETYYFYDGKTIDWI--NEYDKNGKIVKKT-LYNFNGTINFIEEY 284


>UniRef50_Q07878 Cluster: Vacuolar protein sorting-associated
           protein 13; n=2; Saccharomyces cerevisiae|Rep: Vacuolar
           protein sorting-associated protein 13 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 3144

 Score = 33.5 bits (73), Expect = 0.85
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 20  RSKPKKVENLCYEEYDK-DGKLVNRVMMYNLQDVASFIENYLNPEI 64
           + K K+++ L  EEYDK DG  +NR+M    Q ++   + ++ P+I
Sbjct: 729 KEKIKEIKELSPEEYDKIDGNEINRLMFDRFQILSQDTQIFVGPDI 774


>UniRef50_Q9AW23 Cluster: DNA-directed RNA polymerase II; n=1;
           Guillardia theta|Rep: DNA-directed RNA polymerase II -
           Guillardia theta (Cryptomonas phi)
          Length = 299

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 7   LRRVLIINGENFLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQDVASFIENYLNPE 63
           LR  ++   ENF++   K   +LCY E + D K +N      ++ ++ F +NYLN E
Sbjct: 192 LRPDILNKLENFIKDGIKN-SDLCYNEKNSDYKCINLDNERKIELLSIFEKNYLNLE 247


>UniRef50_Q4T628 Cluster: Chromosome undetermined SCAF8972, whole
          genome shotgun sequence; n=5; Euteleostomi|Rep:
          Chromosome undetermined SCAF8972, whole genome shotgun
          sequence - Tetraodon nigroviridis (Green puffer)
          Length = 549

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 10 VLIINGENFLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQDVASFIENYLNPEICYGKC 69
          ++ I+ E F+  KP   +  C EE   +G L+ +V+     +  +     + P+ CYG C
Sbjct: 1  IVTIHQEPFVYVKPTMPDGTCKEEITLNGVLIKKVICTGPNE--TIPGRPIVPQCCYGFC 58

Query: 70 V 70
          +
Sbjct: 59 I 59


>UniRef50_Q182D7 Cluster: Probable ATP-dependent helicase; n=4;
           Clostridium difficile|Rep: Probable ATP-dependent
           helicase - Clostridium difficile (strain 630)
          Length = 805

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 14  NGENFLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQDVASFIENYLNPEICYGKCV 70
           N E+++R    KV+   YE  +K G L      +NL+D+ S+I + LN +  +G+ V
Sbjct: 142 NYEDYMRLSISKVQEEIYEYIEK-GILEKEE--FNLKDIESYINSILNVDFKFGEDV 195


>UniRef50_A6TLW3 Cluster: S-layer domain protein precursor; n=1;
            Alkaliphilus metalliredigens QYMF|Rep: S-layer domain
            protein precursor - Alkaliphilus metalliredigens QYMF
          Length = 1948

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 31   YEEYDKDGKLVNRVMMYN-LQDV-ASFIENYLNP 62
            YEEY+ DGK+ N+    + ++D+   ++EN LNP
Sbjct: 1902 YEEYNLDGKISNKATTSDTIKDILIDYVENLLNP 1935


>UniRef50_Q7RLB1 Cluster: Rhoptry protein; n=3; Plasmodium
           (Vinckeia)|Rep: Rhoptry protein - Plasmodium yoelii
           yoelii
          Length = 937

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 17  NFLRSKPKK---VENLCYEEYDKDGKLVNRVMMYNLQDVASFIENYLNPEICY 66
           N  ++K KK   VEN+ Y  Y+K   L N+  M N +   +F+ N LN +  Y
Sbjct: 574 NLEKNKYKKKCNVENIIYGNYNKLKHLNNKYKMKNEEHYYNFLNNILNEKSEY 626


>UniRef50_A7MHJ7 Cluster: Putative uncharacterized protein; n=1;
           Enterobacter sakazakii ATCC BAA-894|Rep: Putative
           uncharacterized protein - Enterobacter sakazakii ATCC
           BAA-894
          Length = 190

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 16  ENFLRSKPKKVENLCYEEYDKDGKLV-NRVMMYNLQD 51
           E + + KPKK   +CY++ +K G+   +  +MY L+D
Sbjct: 140 EKYFKHKPKKDIVMCYKDIEKSGEYTQSNSIMYYLKD 176


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.321    0.140    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,203,471
Number of Sequences: 1657284
Number of extensions: 2840468
Number of successful extensions: 7452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7451
Number of HSP's gapped (non-prelim): 11
length of query: 73
length of database: 575,637,011
effective HSP length: 52
effective length of query: 21
effective length of database: 489,458,243
effective search space: 10278623103
effective search space used: 10278623103
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)