GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000370-TA|BGIBMGA000370-PA|undefined
         (73 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    27   2.4  
03_02_0880 - 12103703-12103726,12103938-12104210,12104389-121049...    27   2.4  
01_05_0318 - 20826377-20826571,20826663-20826764,20826839-208269...    26   4.3  
05_01_0453 - 3592555-3592897,3592997-3593067,3593372-3593465,359...    25   9.8  
01_01_0384 - 2970369-2970726,2970812-2970882,2971428-2971509,297...    25   9.8  

>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 16   ENFLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQDVAS--FIENYLN 61
            +NF RS PK+ E      Y K    V R+      D A+  + E YL+
Sbjct: 1103 QNFFRSHPKEAEKTSKGSYSKRNGQVMRIFSVGAVDDANTLYAELYLH 1150


>03_02_0880 -
           12103703-12103726,12103938-12104210,12104389-12104931,
           12105017-12105374,12105696-12105994,12106116-12106189,
           12106630-12106717,12107573-12107674,12107813-12107841,
           12108118-12108235
          Length = 635

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 3/27 (11%)

Query: 2   SLPAPLRRVLIINGENFLRSKPKKVEN 28
           S+P P++R  +I+G N    KP KV+N
Sbjct: 128 SVPVPVQRTEVISGNNM---KPAKVQN 151


>01_05_0318 -
           20826377-20826571,20826663-20826764,20826839-20826973,
           20827924-20828016,20828072-20828230,20828325-20828929,
           20829098-20829119,20829339-20829393,20829426-20829466,
           20830250-20830363
          Length = 506

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 13  INGENFLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQDVASFIENYL-----NPEICYG 67
           ING   L  +P  ++NL +     + K + R+ MYN   +A FIE  +     NP   YG
Sbjct: 271 INGCIIL-PQPFYLDNLDFGTDSPEHKNIPRIGMYNDSMIAEFIERDVILKNRNPFPTYG 329

Query: 68  K 68
           K
Sbjct: 330 K 330


>05_01_0453 -
           3592555-3592897,3592997-3593067,3593372-3593465,
           3593547-3593614,3593694-3593760,3593924-3594054,
           3594145-3594252,3594671-3594757,3594991-3595056,
           3595564-3595630,3596116-3596192,3596358-3596417,
           3597363-3597480,3597833-3597906,3598216-3598312,
           3599328-3599380,3599535-3599630,3599768-3599965,
           3600556-3600722,3600813-3600882,3601428-3601448,
           3602851-3602982
          Length = 754

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 38  GKLVNRVMMYNLQDVASFIENY 59
           GK VN+ +M  +QD+A  + NY
Sbjct: 252 GKEVNKKIMDTVQDLAKALSNY 273


>01_01_0384 -
           2970369-2970726,2970812-2970882,2971428-2971509,
           2971757-2971818,2972308-2972401,2972502-2972569,
           2972681-2972747,2972830-2972960,2973093-2973200,
           2973577-2973642,2973706-2973774,2973990-2974115,
           2974167-2974284,2974741-2974847,2975889-2976009,
           2976162-2976235,2976955-2977051,2977564-2977679,
           2978218-2978313,2978426-2978635,2979101-2979253
          Length = 797

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 38  GKLVNRVMMYNLQDVASFIENY 59
           GK +N  +M ++QD+A    NY
Sbjct: 198 GKEINNAIMSSIQDLAKSFSNY 219


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.140    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,889
Number of Sequences: 37544
Number of extensions: 72271
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 5
length of query: 73
length of database: 14,793,348
effective HSP length: 53
effective length of query: 20
effective length of database: 12,803,516
effective search space: 256070320
effective search space used: 256070320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)