GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000370-TA|BGIBMGA000370-PA|undefined
         (73 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-16|CAJ85780.1|  318|Caenorhabditis elegans Hypothetical...    28   0.91 
AL032657-15|CAA21734.1|  788|Caenorhabditis elegans Hypothetical...    28   0.91 
U21324-5|AAN63436.1|  486|Caenorhabditis elegans Hypothetical pr...    26   2.8  
U21324-4|AAN63435.1|  537|Caenorhabditis elegans Hypothetical pr...    26   2.8  
AF024493-11|AAK68347.1|  432|Caenorhabditis elegans Hypothetical...    26   3.7  
Z70780-5|CAD91633.1|  779|Caenorhabditis elegans Hypothetical pr...    25   4.9  
Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical pr...    25   4.9  
Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical pr...    25   4.9  
Z50109-7|CAA90440.1|  363|Caenorhabditis elegans Hypothetical pr...    25   4.9  
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    25   4.9  
U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical p...    25   4.9  
AC024805-9|AAK39341.2|  237|Caenorhabditis elegans Hypothetical ...    25   4.9  
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    25   6.5  
U23484-13|AAC46774.1|  399|Caenorhabditis elegans Hypothetical p...    25   8.5  

>AL032657-16|CAJ85780.1|  318|Caenorhabditis elegans Hypothetical
          protein Y47H9C.5b protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 34 YDKDGKLVNRVMMYNLQDVASFIENYLNPEI 64
          Y  DGK    V  +N+  +  F++N LNP +
Sbjct: 51 YTPDGKTHKMVGYHNVDYILEFLDNSLNPSV 81


>AL032657-15|CAA21734.1|  788|Caenorhabditis elegans Hypothetical
           protein Y47H9C.5a protein.
          Length = 788

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 34  YDKDGKLVNRVMMYNLQDVASFIENYLNPEI 64
           Y  DGK    V  +N+  +  F++N LNP +
Sbjct: 521 YTPDGKTHKMVGYHNVDYILEFLDNSLNPSV 551


>U21324-5|AAN63436.1|  486|Caenorhabditis elegans Hypothetical
           protein C35D10.7b protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 14  NGENFLRSKPKKVENLCYEEYDKDGKL---VNRVMMYNLQDVASFIENYL 60
           N E  +R K K VEN+C+E       L   V  V+  NL  +   +E  L
Sbjct: 60  NDEPSVRRKRKSVENMCHEREHHGDHLQMQVASVIASNLGPMVEIVEKKL 109


>U21324-4|AAN63435.1|  537|Caenorhabditis elegans Hypothetical
           protein C35D10.7a protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 14  NGENFLRSKPKKVENLCYEEYDKDGKL---VNRVMMYNLQDVASFIENYL 60
           N E  +R K K VEN+C+E       L   V  V+  NL  +   +E  L
Sbjct: 111 NDEPSVRRKRKSVENMCHEREHHGDHLQMQVASVIASNLGPMVEIVEKKL 160


>AF024493-11|AAK68347.1|  432|Caenorhabditis elegans Hypothetical
          protein F23F1.9 protein.
          Length = 432

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 17 NFLRSKPKKVENLCYEEYDKDGK 39
          +F+ ++PK ++NL +E + K G+
Sbjct: 34 SFVHNRPKDLKNLTFERHGKGGR 56


>Z70780-5|CAD91633.1|  779|Caenorhabditis elegans Hypothetical
           protein F46B6.5c protein.
          Length = 779

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/34 (29%), Positives = 22/34 (64%)

Query: 33  EYDKDGKLVNRVMMYNLQDVASFIENYLNPEICY 66
           ++++D +  +R  + N Q++ + +EN LNP + Y
Sbjct: 242 QFEEDSQKTSRRKINNPQNLNAKVENALNPLVGY 275


>Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical
           protein F46B6.5b protein.
          Length = 786

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/34 (29%), Positives = 22/34 (64%)

Query: 33  EYDKDGKLVNRVMMYNLQDVASFIENYLNPEICY 66
           ++++D +  +R  + N Q++ + +EN LNP + Y
Sbjct: 242 QFEEDSQKTSRRKINNPQNLNAKVENALNPLVGY 275


>Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical
           protein F46B6.5a protein.
          Length = 828

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/34 (29%), Positives = 22/34 (64%)

Query: 33  EYDKDGKLVNRVMMYNLQDVASFIENYLNPEICY 66
           ++++D +  +R  + N Q++ + +EN LNP + Y
Sbjct: 242 QFEEDSQKTSRRKINNPQNLNAKVENALNPLVGY 275


>Z50109-7|CAA90440.1|  363|Caenorhabditis elegans Hypothetical
           protein C09H10.9 protein.
          Length = 363

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 36  KDGKLVNRVMMYNLQDVASFIENYLNPEI 64
           K G L+      NL   A +IEN++ P++
Sbjct: 235 KHGALIGTCSYSNLHSFAKWIENFVYPDV 263


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 49  LQDVASFIENYLNPEICYGKCVSGH 73
           L+  A  +E  + PE C  KC  GH
Sbjct: 585 LEGTAIAVETAVTPEECKCKCAEGH 609


>U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical
           protein F20D6.1 protein.
          Length = 269

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 31  YEEYDKDGKLVNRVMMYNLQDVASFIENYLNPEI 64
           ++ Y KD     RV + N  ++ S     LNPEI
Sbjct: 223 FKGYTKDYSSAGRVSVTNTVEIKSIRTEQLNPEI 256


>AC024805-9|AAK39341.2|  237|Caenorhabditis elegans Hypothetical
          protein Y51H7C.10 protein.
          Length = 237

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 8  RRVLIINGENFLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQ 50
          RR ++ N E   ++ PK +ENL  ++Y K  KL   +  Y  Q
Sbjct: 55 RRKILGNSEKGEKN-PKNLENLLLDDYLKPQKLALSLETYTSQ 96


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 2   SLPAPLRRVLIINGENFLRSKPKKVENLC--YEEYDKDGKLVNRVMMYNLQDVASFIEN 58
           ++PA   RV +I    FL+S+ KK+   C   E +++D   +N  +   ++D    I++
Sbjct: 131 NMPALRNRVTLIMLTYFLKSQEKKLGTYCEFVEYFERDIIKLNEELDELIEDCTMSIDD 189


>U23484-13|AAC46774.1|  399|Caenorhabditis elegans Hypothetical
           protein EEED8.14 protein.
          Length = 399

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 7   LRRVLIINGENFLRSKPKKVENLCYEEYDKDGKLVNRVM 45
           L  V  I+GE     K + V  L  EE  K+ K +NR M
Sbjct: 165 LNDVKSIHGEIMEMKKKQNVSELFNEEVIKEFKAINREM 203


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.140    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,665
Number of Sequences: 27539
Number of extensions: 70317
Number of successful extensions: 180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 14
length of query: 73
length of database: 12,573,161
effective HSP length: 53
effective length of query: 20
effective length of database: 11,113,594
effective search space: 222271880
effective search space used: 222271880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)