GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000370-TA|BGIBMGA000370-PA|undefined
         (73 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    26   3.5  
At4g19515.1 68417.m02871 disease resistance family protein simil...    25   6.1  
At3g10340.1 68416.m01240 phenylalanine ammonia-lyase, putative s...    25   6.1  
At1g70080.1 68414.m08063 terpene synthase/cyclase family protein...    25   6.1  
At4g12620.1 68417.m01988 replication control protein, putative s...    25   8.1  
At2g25730.1 68415.m03084 expressed protein                             25   8.1  

>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein mip1
           (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 27  ENLCYEEYDKDGKLVNRVMMYNLQDVAS 54
           + +C EE+D D  +V  +++ +L DV S
Sbjct: 667 KGVCDEEFDDDENIVEDIIIKSLLDVVS 694


>At4g19515.1 68417.m02871 disease resistance family protein similar
           to downy mildew resistance protein RPP5 [Arabidopsis
           thaliana] GI:6449046; contains Pfam profile PF01582: TIR
           domain
          Length = 524

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 17  NFLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQDVASFIENYLNPEIC 65
           +FL+    K   +C  +      L+N+V+  +   V  F ENY +  +C
Sbjct: 276 DFLKKLVYKGIRICIGDKILSRSLINKVIKESSIAVVVFSENYASSSLC 324


>At3g10340.1 68416.m01240 phenylalanine ammonia-lyase, putative
           similar to phenylalanine ammonia-lyase GB:S48726
           [Petroselinum crispum]
          Length = 707

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 23  PKKVENLCYEEYDKDGKLVNRVMMYNLQDVASFIENYLNPEICYGKCV 70
           PK+VE +  E  +    + NR+       +  F+ + LN E+  G+ V
Sbjct: 622 PKEVERVRVEYEEGTSAIANRIKECRSYPLYRFVRDELNTELLTGENV 669


>At1g70080.1 68414.m08063 terpene synthase/cyclase family protein
           similar to (+)-delta-cadinene synthase [Gossypium
           hirsutum][GI:8389329], sesquiterpene synthases
           [GI:11934937][Lycopersicon hirsutum],
           [GI:11934933][Lycopersicon esculentum]; contains Pfam
           profile: PF01397: Terpene synthase family
          Length = 611

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 7   LRRVLIINGENFLRSKPKKVENLCYEEYDKDGKLVNRVMMYNLQDVASFIE-NYLNPEIC 65
           ++R  + NG N    + K  E     E++K    +++VM       A FI  + L P + 
Sbjct: 516 MKRGDVCNGINCYTKQHKVSEEEACIEFEKKTNHMSKVMNEEFLKAAKFIPLHILRPVLN 575

Query: 66  YGK 68
           YG+
Sbjct: 576 YGR 578


>At4g12620.1 68417.m01988 replication control protein, putative
           similar to origin recognition complex subunit 1
           (Replication control protein 1)[Homo sapiens]
           SWISS-PROT:Q13415
          Length = 813

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 7/25 (28%), Positives = 17/25 (68%)

Query: 49  LQDVASFIENYLNPEICYGKCVSGH 73
           ++++ SFI+  ++ + C G+C+  H
Sbjct: 446 MEEITSFIKGSISDDQCLGRCMYIH 470


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 17  NFLRSKPKKVENLCYE--EYDKDGKLVNR 43
           + LR+ P+K+ NLC +  +YD   + VNR
Sbjct: 748 SILRAAPEKLLNLCMQRAKYDIGEEAVNR 776


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.140    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,900
Number of Sequences: 28952
Number of extensions: 65272
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 6
length of query: 73
length of database: 12,070,560
effective HSP length: 53
effective length of query: 20
effective length of database: 10,536,104
effective search space: 210722080
effective search space used: 210722080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)