Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000367-TA|BGIBMGA000367-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR012677|Nucleotide-binding,
alpha-beta plait
         (274 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.9  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
          protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 19 QGVLPPPSEVVENGLKIVTEYKY 41
          QGV    S  + N LK++ E+KY
Sbjct: 15 QGVTDIHSRNLTNSLKVIYEWKY 37


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 241 KFRADAAKAIQSLNGHGYDHLILNV 265
           +F  +  KA+ S+N   ++H +L +
Sbjct: 872 EFALELKKALSSINEQSFNHFVLKM 896


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)

Query: 246 AAKAIQSLNGHGYD-HL 261
           AA A+ S  GHG+D HL
Sbjct: 11  AAAAVTSAGGHGFDAHL 27


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)

Query: 246 AAKAIQSLNGHGYD-HL 261
           AA A+ S  GHG+D HL
Sbjct: 11  AAAAVTSAGGHGFDAHL 27


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,802
Number of Sequences: 429
Number of extensions: 3509
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 274
length of database: 140,377
effective HSP length: 57
effective length of query: 217
effective length of database: 115,924
effective search space: 25155508
effective search space used: 25155508
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)