Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000367-TA|BGIBMGA000367-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR012677|Nucleotide-binding,
alpha-beta plait
(274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 147 1e-36
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 8e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 42 7e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 7e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 41 2e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 41 2e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 0.001
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 0.001
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.002
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.002
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 37 0.003
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 36 0.005
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.008
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.008
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 36 0.008
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 35 0.011
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 34 0.019
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 34 0.025
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 34 0.025
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.033
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.044
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.059
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 32 0.077
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 32 0.10
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 0.55
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 29 0.55
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 29 0.55
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.55
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 29 0.55
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 29 0.72
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 29 0.95
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.95
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 1.3
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 28 1.7
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 28 1.7
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 27 2.2
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 2.2
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 2.9
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 27 2.9
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 3.8
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 3.8
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 5.1
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 6.7
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 25 8.9
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 25 8.9
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 147 bits (357), Expect = 1e-36
Identities = 92/276 (33%), Positives = 145/276 (52%), Gaps = 20/276 (7%)
Query: 11 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSI 65
WAD+ + G+ P + +N G K + E++ D++ KKVK+ R + I +RV ++
Sbjct: 9 WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAV 65
Query: 66 AKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELDGLKPPS 121
A+RK W KFG A G + TT+V E+V ++ + T+KEE Q +K
Sbjct: 66 AERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQDEAALAAAKVKAKG 125
Query: 122 SNVIFKCRTCQGDHLTLYCPFKH----TQIXXXXXXXXXXXXXXXXXXSNKYIPP---SS 174
S+V+ +CR C+G+H T CP+K +YI P +
Sbjct: 126 SSVV-RCRACKGNHFTAQCPYKSIIGPVDEPPLDASPVSSRASGALGEKGRYIAPHLRAG 184
Query: 175 AGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKG 234
+GR G R+D +R++NLS+ E ++ DL + FG + ++YLAK+K TG KG
Sbjct: 185 SGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKG 244
Query: 235 FAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 270
FA+V + R A KA L+G+G+++LIL E+SKP
Sbjct: 245 FAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSKP 280
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 45.6 bits (103), Expect = 8e-06
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 185 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 244
P + + I ++ + A E ++DL FGPV L+L ++ TG+ KG+A + +
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLE 62
Query: 245 DAAKAIQSLNGHGYDH-LILNVEWSKPPQ 272
A KA+ N D L ++ + +PP+
Sbjct: 63 QAQKAVDEKNLSLLDEKLEVDFAFLEPPE 91
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 42.3 bits (95), Expect = 7e-05
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 189 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 248
E + + NLS A E D+ G G + + L + +G KGF YV F D+AK
Sbjct: 363 EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS-DIDSAK 421
Query: 249 AIQSLNGH 256
+NGH
Sbjct: 422 KCVEMNGH 429
Score = 29.5 bits (63), Expect = 0.55
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 172 PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGH 231
P+S R +P + + + LS + + + +G + + + +G
Sbjct: 243 PASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGR 302
Query: 232 CKGFAYVHFKFRADAAKAIQSLNG-HGYDHLILNVEWSKP-PQN 273
KG+ YV F+ +AAKA + NG D ++N++ S P P N
Sbjct: 303 SKGYGYVDFE-TPEAAKAAVAANGTKEIDGRMVNLDLSNPRPAN 345
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ NL+ E D+ L FG + ++++ +K T + KGFAY+ F DA +A L+
Sbjct: 327 LRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDA 386
Query: 256 HGYDHLILNV 265
+ +L+V
Sbjct: 387 KPFQGRLLHV 396
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 234 GFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 268
GF +V FK +A A A+ ++NG D L ++ S
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 223 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 254
+AK K G + FA++ FK DA KAI+ LN
Sbjct: 37 VAKTKE-GVSRRFAFIGFKNEEDADKAIRYLN 67
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 41.1 bits (92), Expect = 2e-04
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 169 YIPPSSAGRIPGRDQPPVRREDVT----AIRISNLSNFAVEADIDDLVKGFGPVHKLYLA 224
YI P + + + DV I ISNL E + +L+K FG + L
Sbjct: 283 YIVPQITPEVSQKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLI 342
Query: 225 KEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
K + G KGF + FK +DA AI L+G
Sbjct: 343 KNIADGSSKGFCFCEFKNPSDAEVAISGLDG 373
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I + NL + ++ DL G V + +A E TG KGF V F+ DAA +I+ L
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Query: 254 NGHGY 258
NG+ Y
Sbjct: 341 NGYRY 345
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 193 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLA---KEKSTGHCKG--FAYVHFKFRADAA 247
+I + NL + +D+ +L + FG K ++ K KST FA++ F+ + A
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 248 KAIQSLNGHGYDHLILNVEWS 268
AI SLNG + L VE++
Sbjct: 81 NAIASLNGSSFQGNTLKVEYT 101
Score = 35.1 bits (77), Expect = 0.011
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 208 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+++L FG + LA ST KG+ +V F +A +AI +LNG
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNG 484
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+S +++ E ++ + FG V + + +E T +GF ++ F +A AI +LN
Sbjct: 105 VSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNS 164
Query: 256 HGYDHLILNVEWSK 269
+ +LNV+ +K
Sbjct: 165 QEFYGRVLNVQKAK 178
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 190 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 249
D + +S L+N ++ D + GPV + ++K +G KG AYV F D+ +A
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQA 296
Query: 250 IQSLNG 255
+L+G
Sbjct: 297 AIALSG 302
Score = 33.5 bits (73), Expect = 0.033
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+SN+ + D+ + + FG + ++L ++ KGF Y+ ++ A A++ +NG
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKMNG 402
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
+ + N+ E + D+ K GPV L + +G KG+ + + A AA A+++L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 254 NGHGYDHLILNVEWSKPPQ 272
N + L V++ Q
Sbjct: 67 NNYDAGTRRLRVDFPTADQ 85
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 193 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 252
++ + L EA + +L GPV + + ++ T G+AYV+F D KA+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 253 LN 254
LN
Sbjct: 141 LN 142
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 188 REDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 247
+ + T + I NL E + DL FG + L L K+++ +GF +V++ A
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP-RGFGFVNYANHECAQ 315
Query: 248 KAIQSLNGHGY 258
KA+ LN Y
Sbjct: 316 KAVDELNDKEY 326
Score = 34.3 bits (75), Expect = 0.019
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 184 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 243
P +R+ + I NL + D FG + +A ++ G+ KG+ +VHF
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSV 218
Query: 244 ADAAKAIQSLNG 255
A AI+ +NG
Sbjct: 219 ESANAAIEHVNG 230
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+S LS E+DI+ +GP+ ++ + + K TG G+A+V F+ D A ++ G
Sbjct: 104 LSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAG 163
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.5 bits (78), Expect = 0.008
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 187 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 246
++E + + + NL +AD+ + G + ++ L + TG CKGF +V F
Sbjct: 223 KKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTC 282
Query: 247 AKAIQSLNGHGYDHLILNVEWSKPPQN 273
KA++ GH L + SK +N
Sbjct: 283 MKAMEL--GHNSWRLEYGEDRSKRMRN 307
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 35.5 bits (78), Expect = 0.008
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 201 NFAVEADIDDLVKGF---GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 257
N A + DDL F GP+ + TG +G+ +V F DA +A + L
Sbjct: 11 NLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKK 70
Query: 258 YDHLILNVEWSKP 270
IL ++++ P
Sbjct: 71 LHGRILRLDFATP 83
Score = 34.7 bits (76), Expect = 0.015
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 268
FG V ++ + K G GFA+V K R A +A+ SLNG D + V+W+
Sbjct: 131 FGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 189 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 248
ED +R NL E ++ + + FGP+ L K+ +T G ++ F++ D
Sbjct: 276 EDTVFVR--NLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQN 333
Query: 249 AIQ 251
++
Sbjct: 334 CLE 336
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 35.5 bits (78), Expect = 0.008
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 184 PP--VRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 241
PP V +E + + I NLS ++ DL +GPV ++ L T +G A+V ++
Sbjct: 2 PPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQT---RGTAFVVYE 58
Query: 242 FRADAAKAIQSLNGHGYDHLILNVEWSKP 270
DA +A + L+G+ + L V + P
Sbjct: 59 NVQDARRACEKLSGYNFMDRYLVVHYYNP 87
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 35.1 bits (77), Expect = 0.011
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 185 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK----GFAYVHF 240
P ++ D + + LS +++I L + G V K+ + + + G A+V F
Sbjct: 37 PAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTF 96
Query: 241 KFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 272
+ D KAI++LNG D + V+ ++P Q
Sbjct: 97 NNQEDVDKAIETLNGKTLDDREIVVQKARPVQ 128
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 218 VHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVE 266
+ ++ L E+ G +GF +V F D ++AI+ +NG L L V+
Sbjct: 245 IRRIKLRGEQRRG--RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.3 bits (75), Expect = 0.019
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 190 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 240
D ++ + N+ ++ G V+++ + +K TGH KGFAY+ F
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.9 bits (74), Expect = 0.025
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 190 DVTAIRISNLSNFAV--EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 247
D + + + NL + + ++ ++DL FG + LA ++G KG+ +V F+ A
Sbjct: 380 DPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAV 439
Query: 248 KAIQSLNG 255
+A +LNG
Sbjct: 440 RAKDTLNG 447
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.9 bits (74), Expect = 0.025
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 175 AGRIPGRDQPPVRR-EDV--TAIRISNLSNFAVEAD-IDDLVKGFGPVHKLYLAKEKSTG 230
AG + PV ED TAI + N+ F++E D + D K G G
Sbjct: 182 AGSTANSNSTPVEPGEDTIPTAIVVKNIP-FSLEKDTLLDHFKQLGIPRPYAFNYHYDNG 240
Query: 231 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSK 269
+G A+ +F +A +Q+LNG+ + L VEW +
Sbjct: 241 IFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEWKR 279
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 33.5 bits (73), Expect = 0.033
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ NL N E +I + ++ FGP+ ++ + E++ A+VHF A A KA+Q L
Sbjct: 210 LGNLPNGITEDEIREDLEPFGPIDQIKIVTERN------IAFVHFLNIAAAIKAVQELP- 262
Query: 256 HGYDHLILNVEWSK 269
LN +WSK
Sbjct: 263 -------LNPKWSK 269
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.1 bits (72), Expect = 0.044
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 190 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 249
D I I NL E DI + FG + L ++K TG KGFA++ ++ + A
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLA 88
Query: 250 IQSL 253
+ ++
Sbjct: 89 VDNM 92
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 32.7 bits (71), Expect = 0.059
Identities = 15/71 (21%), Positives = 33/71 (46%)
Query: 189 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 248
E + I + NL+ + I ++ +G + +++ K + KG+ Y+ + + AA
Sbjct: 96 EPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAAN 155
Query: 249 AIQSLNGHGYD 259
A+ +N D
Sbjct: 156 AVDKMNNAELD 166
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 32.3 bits (70), Expect = 0.077
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ N+ E + ++ GPV L + TG KG+ + F A A++ LN
Sbjct: 11 VGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNN 70
Query: 256 HGYDHLILNVEW-SKPPQNN 274
+ VE+ S P+ N
Sbjct: 71 SELGPRKIRVEFPSNDPRRN 90
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.9 bits (69), Expect = 0.10
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 187 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 246
R +D T I + NL ++ + +L GPV +++ +++ GF + F D
Sbjct: 7 RNQDAT-IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 247 AKAIQSLN 254
A Q LN
Sbjct: 66 EYACQILN 73
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.55
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 199 LSNFAVEADIDDLVKGFGP---VHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 250
+ N A EA+ + L + FG + + + ++ T KGFAY+ FK KA+
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 29.5 bits (63), Expect = 0.55
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 23 PPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK 67
PP ++VV+ K D++ + +V TY I K V+ +IAK
Sbjct: 337 PPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIAK 381
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.5 bits (63), Expect = 0.55
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFK 241
FGPV +L +++ + TG K +A++ F+
Sbjct: 128 FGPVLRLRMSRNRKTGSSKHYAFIEFE 154
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.5 bits (63), Expect = 0.55
Identities = 15/73 (20%), Positives = 33/73 (45%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
+ + NLS + E I L G + ++ + ++ T GF +V + DA +++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 254 NGHGYDHLILNVE 266
+ D I+ +
Sbjct: 94 SRTSLDERIIRAD 106
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 29.5 bits (63), Expect = 0.55
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 189 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 248
E+ +R+ NL +E D+ L + F P+ + G +G V+F+ DA
Sbjct: 82 ENRFGVRVENLHYQVLEKDVLSLFENFHPIR--VIMNYDRAGRSEGSCDVYFETSQDAED 139
Query: 249 AIQSLNGHGYDHLILNVEWSKPP 271
A ++L + + PP
Sbjct: 140 AQKTLQSTNLKGSEIQISKKSPP 162
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 29.1 bits (62), Expect = 0.72
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 268
+G V +L + + H G YV FK+ A AI LN Y + E S
Sbjct: 87 YGEVEQLVVC-DNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELS 139
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 28.7 bits (61), Expect = 0.95
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 230 GHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSK--PP 271
G +G A+ +F +A +Q LNG+ L VEW + PP
Sbjct: 270 GVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPP 313
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.95
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 185 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 241
P RED I L+ + + D + FG V + ++ +TG +GF ++ FK
Sbjct: 157 PFNREDGKMF-IGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 179 PGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 238
P R P +E + + + E + + FG V L +K TG +GF +V
Sbjct: 234 PKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFV 293
Query: 239 HFK 241
++
Sbjct: 294 TYE 296
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/74 (18%), Positives = 34/74 (45%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ L+ + D++ + FG + + ++K TG +A++ F + KA +
Sbjct: 248 VCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQN 307
Query: 256 HGYDHLILNVEWSK 269
D ++V++S+
Sbjct: 308 VLIDDSRIHVDFSQ 321
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 1.7
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 45 NKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPN----PATTNVAEDV-FMQF 99
NK+VK+ K+ K+V S S K+K + G S SD N ++ N +ED F F
Sbjct: 20 NKRVKVA---KLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNESEDEDFAGF 76
Query: 100 ITSKEESQRPDDGE 113
S E+ + E
Sbjct: 77 GESASENDELESAE 90
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 25 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASD-KPG 83
P+E V G+ +V E K K+ K + + V + + R + D +D K G
Sbjct: 467 PTESV--GIDVVMEPKLQPSVKEKKPTKDLQSPLPSVEEDSSNRDKKTDIADLHTDSKVG 524
Query: 84 PNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNV 124
+ ++ D +Q ++++ P++ + PPS NV
Sbjct: 525 IADVLSPISPDAALQSDGPLKKAKEPEESSITPTTPPSFNV 565
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/81 (24%), Positives = 31/81 (38%)
Query: 45 NKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKE 104
NK + + IEK V K AKRK + + G K P E+ + +
Sbjct: 172 NKSAQKLNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETNEDDLLGQS 231
Query: 105 ESQRPDDGELDGLKPPSSNVI 125
+ D +D P +S+ I
Sbjct: 232 PTACTTDANIDNSIPENSDKI 252
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 27.5 bits (58), Expect = 2.2
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 14 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI-AKRKTWS 72
EVE+D+ V + V LKIV E KY + + R +E + SI R +
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVELNALQTSIDTIRNELN 165
Query: 73 KFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDG 112
+ D +D + + D F++ + +E ++ DG
Sbjct: 166 ELRDQLND------SESKKLSDKFVEIRSELDEVRKQQDG 199
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/64 (28%), Positives = 25/64 (39%)
Query: 189 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 248
E T + +SN+S + K FG V L L TG G + F R+ +
Sbjct: 91 EPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISV 150
Query: 249 AIQS 252
A S
Sbjct: 151 AAHS 154
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 27.1 bits (57), Expect = 2.9
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 26 SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPN 85
+E VE L+ E + + KK + +R + + R + I + + +S F D+
Sbjct: 696 NERVERDLRKKAEREALDRAKKEEELRESRRQARKLDFLITQTELYSHFVGRKMDREQDL 755
Query: 86 PATTNVAEDVFMQFITSKEESQR 108
P+ TN A + F + +EE R
Sbjct: 756 PSATNTASVSEINFDSDEEEDIR 778
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 3.8
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 7/130 (5%)
Query: 5 EEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKS 64
EE + S +++V+ Q P SE + E K D+ + V T I +
Sbjct: 965 EEVKQSVSEQVDSAQLTSEPKSESLPKS----PEEKSDDTSNDVTTENTNDINGDSNMDN 1020
Query: 65 IAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNV 124
+A T K D+ ATT AE+ Q + + S P++ + L P S +
Sbjct: 1021 VA---TVDKSTDAVDTSTATVAATTTTAEEELPQKESQERSSPSPENQDSTPLAPKSVSP 1077
Query: 125 IFKCRTCQGD 134
RT D
Sbjct: 1078 KQAARTLDID 1087
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 14 EVEIDQGVLPPPSEVVENGLKIVTEYKY 41
EVE++ V+ P S EN + V +Y Y
Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 254
I NL + E +I++ FG + + + +K+ A+VHF DA K +++L+
Sbjct: 303 IGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN------IAFVHFLNIRDAIKVVRTLS 355
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 25 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 84
PS + K + KY+N + + I R V+ S R+ + F D +D+P
Sbjct: 50 PSPTLAGMAKRTLKLKYENMDAALSINR------EVLCYSKDAREIYYNFEDEVADEPAE 103
Query: 85 NPATTN 90
PA+T+
Sbjct: 104 APASTS 109
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 264
+A + + FG + + + K+ S ++ + F+ + A AI + I +
Sbjct: 181 DAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFETLSSAYSAINAEK----PSKIYD 236
Query: 265 VEWSKPPQNN 274
V+W KPP++N
Sbjct: 237 VQWLKPPKSN 246
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSK 269
FG K+ + + T +G A+V F +A++A++ L G+ + +++SK
Sbjct: 50 FGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYSK 104
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.133 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,984
Number of Sequences: 5004
Number of extensions: 50849
Number of successful extensions: 161
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 58
length of query: 274
length of database: 2,362,478
effective HSP length: 72
effective length of query: 202
effective length of database: 2,002,190
effective search space: 404442380
effective search space used: 404442380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)
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