Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000367-TA|BGIBMGA000367-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR012677|Nucleotide-binding,
alpha-beta plait
(274 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 95 4e-20
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 40 0.002
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 40 0.003
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.007
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 37 0.016
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 36 0.036
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.047
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 35 0.063
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 35 0.063
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.083
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.083
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.083
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 34 0.14
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 34 0.14
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 34 0.14
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 33 0.25
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 33 0.25
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.33
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 32 0.44
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.44
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 32 0.58
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 31 0.77
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 31 0.77
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 31 1.0
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 31 1.0
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.3
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5) 31 1.3
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 30 1.8
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 30 2.4
SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06) 30 2.4
SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28) 30 2.4
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 30 2.4
SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 29 3.1
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 29 3.1
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 29 5.4
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28) 29 5.4
SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46) 29 5.4
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09) 28 7.2
SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34) 28 7.2
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) 28 7.2
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 28 9.5
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08) 28 9.5
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 95.5 bits (227), Expect = 4e-20
Identities = 40/82 (48%), Positives = 60/82 (73%)
Query: 188 REDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 247
+ + IR++NLS E+D+ +L + GP+ +++LAK+K T KGFA+++F R DAA
Sbjct: 177 QHETATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAA 236
Query: 248 KAIQSLNGHGYDHLILNVEWSK 269
+AI+ L+G GYDHLILNVEW+K
Sbjct: 237 RAIEVLSGFGYDHLILNVEWAK 258
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 17 IDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRK 69
+ + +PP SEV E KIVTEYK D++ K KI+ TY++E R V+K IAKRK
Sbjct: 71 LSESQIPPSSEVREGENKIVTEYKRDDEGKLQKIITTYRVETRRVAKEIAKRK 123
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 102 SKEESQR--PDDGELDGLKPPSSNVIFKCRTCQGDHLTLYCPFK 143
+KE ++R PD E D LK S I +CR C+GDH T CP+K
Sbjct: 116 AKEIAKRKNPDATEEDPLKKLSGQKIVQCRICKGDHWTTKCPYK 159
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
++N+ A E DI +L +G + L++ ++ TG KG+A V ++ +A A+++LNG
Sbjct: 297 VTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNG 356
Query: 256 HGYDHLILNVEWS 268
++V+W+
Sbjct: 357 AEMLGQNISVDWA 369
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/70 (24%), Positives = 40/70 (57%)
Query: 185 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 244
P + +T++++ NL+ D+ + K +G + +Y+ ++++T +GFA+V F +
Sbjct: 9 PPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKR 68
Query: 245 DAAKAIQSLN 254
DA A+ ++
Sbjct: 69 DAEDAMDCMD 78
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/92 (22%), Positives = 42/92 (45%)
Query: 183 QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 242
+P +E T + ++ + + + + ++ + + K +G GF +V +
Sbjct: 38 EPQEAQESKTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNT 97
Query: 243 RADAAKAIQSLNGHGYDHLILNVEWSKPPQNN 274
DA KAI LNG + +L V +S+P +N
Sbjct: 98 TEDAQKAIDKLNGFTIGNKVLKVAFSRPGGDN 129
Score = 36.3 bits (80), Expect = 0.027
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ N+ EA+ + +G + L ++KSTG KG +V + +A+A AI SL+G
Sbjct: 137 VCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSLSG 196
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ N+ A + I L G V+K+ + + CKGF +V + +A AIQ+LNG
Sbjct: 279 VYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTLNG 338
Query: 256 HGY 258
Y
Sbjct: 339 FMY 341
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I I L N+ E + +L+ FG + L K+ +TG KG+A+ + AIQ L
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734
Query: 254 NG 255
NG
Sbjct: 735 NG 736
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 193 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 252
++ + N+ A E + ++ GPV L ++ TG KG+ + +K + A A+++
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 253 LNGHGYDHLILNVEWSKPPQN 273
LNG+ + L V+ + +N
Sbjct: 86 LNGYELNGRALRVDSAASEKN 106
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
+ NL E DL+ +G + +L+L + + TG KG+ +V + R +A +A Q L
Sbjct: 117 VGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQL 174
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 264
+ DI + G V L ++++TG G+A+V++ DA KA++ +NG + L
Sbjct: 40 QEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLK 99
Query: 265 VEWSKP 270
V +++P
Sbjct: 100 VSFARP 105
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKST-GHCKGFAYVHFKFRADAAKA- 249
T I + NL +A+ + GP+ + ++ K+K C+GF YV F DA KA
Sbjct: 20 TTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKAK 79
Query: 250 --IQSLNG 255
I+S+ G
Sbjct: 80 DNIKSIKG 87
Score = 33.5 bits (73), Expect = 0.19
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEK--STGHCKGFAYVHFKFRADAAKAIQSL 253
I NL+ EA + + FG V + + ++K GF +V F DAAKA++ +
Sbjct: 251 IRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEM 310
Query: 254 NGHGYDHLILNVEWSKP 270
N + V+W+ P
Sbjct: 311 NAKKILGRPVAVDWAVP 327
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 181 RDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 240
R +P +E +T I NLS + + +I +L K FG + + + T H KG A+V +
Sbjct: 406 RSKPSDVKEGLTVF-IRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKY 464
Query: 241 K 241
+
Sbjct: 465 R 465
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I I+++ +E DI + + FG V L+KE TG KG+ ++ ++ + A AI S+
Sbjct: 201 IYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASM 260
Query: 254 N 254
N
Sbjct: 261 N 261
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
FGP++K+ L+ + KGFA+V + A A++ +NG
Sbjct: 125 FGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNG 165
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 37.9 bits (84), Expect = 0.009
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 186 VRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRAD 245
+RR ++T + I +L + A + +I++ +GP+ +++A+ GFA+ F R D
Sbjct: 26 LRRAEMTKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPP-----GFAFCIFDDRRD 80
Query: 246 AAKAIQSLNGHGYDHLILNVEWSKPP 271
A A++ L+G + VE +K P
Sbjct: 81 AEDAVRELDGRYICGQRVRVELAKGP 106
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 190 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 249
D + +SNL A E++I++L G V ++ L ++ G KG+ YV ++ + A+ A
Sbjct: 169 DKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRA-GKPKGYGYVEYEQESSASTA 227
Query: 250 IQSLNGHGYDHLILNVEWSKPP 271
+ +L+ ++V S PP
Sbjct: 228 VLTLDKTEVKGRTISVALSNPP 249
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 37.1 bits (82), Expect = 0.016
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
+ + NL E D+ D+ +G + + L + G FA+V F+ DA A++
Sbjct: 263 VYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAG--PPFAFVEFEDPRDAEDAVKGR 320
Query: 254 NGHGYDHLILNVEWSK 269
+GH +D + VE+ +
Sbjct: 321 DGHEFDGYRIRVEFPR 336
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 203 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 262
A E D+++LVK FG V ++ KE G+AYV FK DA +A+ +LN +
Sbjct: 14 ATEKDLENLVKVFGKVREVDF-KE-------GYAYVVFKENKDADRAVAALNNSEFHGAK 65
Query: 263 LNVEWSKPPQN 273
+ +E +K +N
Sbjct: 66 ILMEKAKEMRN 76
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 35.5 bits (78), Expect = 0.047
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + + +L EA + + + FG V + L + T KG+ +V F+ A +A++
Sbjct: 242 TRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAME 301
Query: 252 SLNG 255
+NG
Sbjct: 302 QMNG 305
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 35.1 bits (77), Expect = 0.063
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + + NL A ++++ + FG + K+++A+ GFA+V ++ DA +A++
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPP-----GFAFVEYEDYRDAEEAVR 58
Query: 252 SLNGHGYDHLILNVEWS 268
L+G + VE+S
Sbjct: 59 ELDGANVCDRTIRVEFS 75
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 35.1 bits (77), Expect = 0.063
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 173 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 232
S++GRI D PP R + + N DI + +G + +++ K+K+T
Sbjct: 11 SNSGRIDV-DNPPFSRVFIVCSKRHNAE------DIRSAFEQYGTIEDVWVVKDKATKEN 63
Query: 233 KGFAYVHFKFRADAAKAIQSLNG 255
+G YV F + AA A + ++G
Sbjct: 64 RGVCYVKFVKASSAALACEEMDG 86
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 34.7 bits (76), Expect = 0.083
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 191 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 250
++ + I N+ + A + +I+ + FGP+ +++A+ GFA+ F+ R DA A+
Sbjct: 1 MSRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPP-----GFAFCVFEDRRDAEDAV 55
Query: 251 QSLNGHGYDHLILNVEWSKPP 271
+ L+G VE +K P
Sbjct: 56 RELDGRYICGQRARVELAKGP 76
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 34.7 bits (76), Expect = 0.083
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHK---LYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 252
I NL E +I +++ FG + L+ + G +G+ +V FK + DA KA++
Sbjct: 391 IGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKALRG 450
Query: 253 LNGHGYDHLILNVEWS 268
LN L V+W+
Sbjct: 451 LNKKIVLSRALVVDWA 466
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 34.7 bits (76), Expect = 0.083
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 174 SAGRIPGRDQPPVRREDV-TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 232
+A R R P E+ T + I + +E ++ L++ G + + L + +TG
Sbjct: 134 TAARFGERGFPTTWTEESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLN 193
Query: 233 KGFAYVHFKFRADAAKAIQSLN 254
KGFA+ F + A +AI +LN
Sbjct: 194 KGFAFCTFTEQTSAYQAITTLN 215
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 270
FG + + + + +T +GF +V F+F D A AI ++N + V +KP
Sbjct: 28 FGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAKP 83
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
I NLS E +++ G V + + ++ TG +GF +V F + + KAI +G
Sbjct: 9 IGNLSYSVDEQALEEKFHGCDVVD-VKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDG 67
Query: 256 HGYDHLILNVEWSKP 270
+D + V ++P
Sbjct: 68 QDFDGRPMKVNQAQP 82
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 173 SSAGRIPGRDQPPVRRE-----DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEK 227
SS+ R + P RR+ T + +++L+ + + ++ +G V + L ++
Sbjct: 1133 SSSSSSRSRSRSPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDR 1192
Query: 228 STGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 272
+ +GFAYV + + KA++ ++G D + V+ PP+
Sbjct: 1193 TNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQSVLPPR 1237
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 191 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 250
V + + NLS E + + +G V ++ K+ +A+VHF R A KAI
Sbjct: 328 VKVVYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKD--------YAFVHFTERDHALKAI 379
Query: 251 QSLNGHGYDHLILNVEWSKPPQNN 274
+ +G D L + +KP N
Sbjct: 380 EETDGKEMDGLKIEASLAKPQPGN 403
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/85 (24%), Positives = 35/85 (41%)
Query: 173 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 232
SS+ R+ + T + I L + D+ L +G + +K T C
Sbjct: 81 SSSDRMDSLPDTGEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLC 140
Query: 233 KGFAYVHFKFRADAAKAIQSLNGHG 257
KG+ +V F+ A KA+ +L G
Sbjct: 141 KGYGFVDFESPISAQKAVAALVNKG 165
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 33.1 bits (72), Expect = 0.25
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 3 VAEEFQASWADEVEIDQGVLPPPSEVVENGLKIV-TEYKYDNDNKKVKIVRTYKI-EKRV 60
V +E QA+ + + +VV K+V T+ D +K K + + E +V
Sbjct: 1212 VTKEKQAATSSKTSKSSTSQGKSPKVVSKTKKVVKTKPDVSQDKEKPKAAKAKESGESKV 1271
Query: 61 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELD 115
+K K + +K GD +K P +DV ++ + S +E R ++ +D
Sbjct: 1272 KTKEAEKAEAKAKVGDVPMEKCAPEQEREATEDDVIIEAV-SPDEDDREEESVVD 1325
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKL-YLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 254
I NL E + D FG + + + ++ TG+ KGFA+++F + AI+++N
Sbjct: 104 IGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMN 163
Query: 255 G 255
G
Sbjct: 164 G 164
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 190 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 249
D + + I +L +AD+ + FG V + +K T K F +V + A A
Sbjct: 275 DGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNA 334
Query: 250 IQSLNGHGYDHLILNVEWSKPPQNN 274
IQ +NG L V+ +P N
Sbjct: 335 IQHMNGFQIGAKRLKVQLKRPKDAN 359
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 187 RREDVTAIRISNLSNFAVEADIDD--LVKGFGPVHKLYLAK--EKSTGHCKGFAYVHFKF 242
R+E + + NL ++ IDD L + F P + AK + G+ KGF +V F
Sbjct: 202 RQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSS 261
Query: 243 RADAAKAIQSLNG 255
+A KA+ +NG
Sbjct: 262 PEEATKAVTEMNG 274
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
I NL EAD+ D + V + + ++ T +GFA+V F + + AI L+G
Sbjct: 234 IGNLDFKVNEADLQDRFSRYDVVD-VQVISDRETQRPRGFAFVTFGSKKNMEDAINELDG 292
Query: 256 HGYDHLILNVEWSK 269
+D + V ++
Sbjct: 293 QEFDGRSMKVNQAR 306
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 264
EAD+ L G + + + ++ TG +GF +V F + KAI +G D +
Sbjct: 22 EADVLFLRNGSKFLLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMK 81
Query: 265 VEWSKP 270
V ++P
Sbjct: 82 VNKAQP 87
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I + ++ + E +I + FG V+++ L++ K + KG+A+V +F D I +
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFV--EFACDEVAKIAAD 157
Query: 254 NGHGY 258
H Y
Sbjct: 158 TMHNY 162
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/87 (22%), Positives = 36/87 (41%)
Query: 166 SNKYIPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAK 225
S + I S G+ P V DV + + L E+++ + FG + +
Sbjct: 89 SKRKIEESPIGKEPETKITKVEGVDVGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKL 148
Query: 226 EKSTGHCKGFAYVHFKFRADAAKAIQS 252
+ +T +GF +V FK DA + +
Sbjct: 149 DPNTRRSRGFGFVRFKKDEDAKNVLST 175
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/97 (20%), Positives = 42/97 (43%)
Query: 174 SAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK 233
SA R+ + ++ + +I + +V+ + + F + + ++ TG +
Sbjct: 78 SAKRLLSQPLKKNKKTNTMSIHVPTNVEDSVKCLVASIPLCFVASEAVNIITDRETGRPR 137
Query: 234 GFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 270
GF +V F + + KAI +G D + V +KP
Sbjct: 138 GFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKP 174
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 31.5 bits (68), Expect = 0.77
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 254
FG V + L + K G KGFA++ F+ + A +Q N
Sbjct: 111 FGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFN 150
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 264
E+D++ ++G+G + + L + G+ +V F DA A+ LNG +
Sbjct: 702 ESDVEKFLRGYGKIRDISLKR--------GYGFVEFDDHRDAEDAVHDLNGRDLIGERVV 753
Query: 265 VEWSK 269
VE+SK
Sbjct: 754 VEFSK 758
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 210 DLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 259
+L + +G + ++ + + H G YV F++ DA KA+ LN Y+
Sbjct: 90 ELEEKYGEIEEMNVC-DNLGDHLVGNVYVKFRYEEDAEKAVNDLNNRWYN 138
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 223 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 258
L + +TG KGFAYV + A A + LNG Y
Sbjct: 233 LKRNYNTGESKGFAYVTYNSVGSAIYAKEKLNGFEY 268
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 252
+ D+ + FG + + + ++ T KG+ YV F + AA A+++
Sbjct: 66 DEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALEN 113
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 177 RIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFA 236
++P ++ VR + + NLS E D+ + +G V K+++ ++ TG KG
Sbjct: 307 QLPNEEKQGVRER---TLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGCG 363
Query: 237 YVHFKFRADAAKAIQ 251
V + K ++
Sbjct: 364 VVKLRHPGTVNKILE 378
>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
Length = 297
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 57 EKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDG 116
E+ + +KS + K+ S GDS S P P+ + + ++V Q ++ ++ D E G
Sbjct: 74 EEAIGAKSENEEKSESSSGDSESPPPKPHVSAKELIDEVVKQEMSKHKKKNNDGDSEETG 133
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 176 GRIPGRDQP-PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKG 234
G PG D+P P R +V + + E ++ + + GP++++ L + + G +G
Sbjct: 60 GPPPGWDRPIPPRGCEVF---VGKIPRDLYEDELVPVFETAGPIYEVRLMMDFN-GQNRG 115
Query: 235 FAYVHFKFRADAAKAIQSLNGH 256
+A+V + + DA + +++LN +
Sbjct: 116 YAFVVYTSKDDAKRCVKTLNNY 137
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 167 NKYIPPSSAGRIPGRD-QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAK 225
N I G IP D +PP ++V + + L+ + D++ + FG + + +
Sbjct: 99 NGLIRDDRIGDIPDADIKPP---DNV--LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIR 153
Query: 226 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSK 269
++ TG +A++ F+ D +A ++ D ++V++S+
Sbjct: 154 DQKTGESLQYAFIEFEKDEDCERAYFKMDNVLIDDRRIHVDFSQ 197
>SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)
Length = 159
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 111 DGELDG--LKPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 146
DG+ G KPP S + KC C G H C F ++
Sbjct: 100 DGDTTGNPRKPPQSATVSKCYRCDGKHDPRSCVFSQSK 137
>SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)
Length = 815
Score = 29.9 bits (64), Expect = 2.4
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 2 PVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDN--DNKKVKIVRTYKIEKR 59
P AE+ A E+ I Q P SE EN TE + N D K V++++TYK K
Sbjct: 396 PTAEDEDAEKVPEI-ILQPPSAPDSEDDENCETTETELESHNEQDGKPVRVLQTYKRSK- 453
Query: 60 VVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKP 119
+ IA+ + + D+AS K T ED D + D P
Sbjct: 454 --EEKIAEEEMEGRM-DNASGKLKRKEETLIELEDDDGDSDLPPLPPPCYRDEDEDLPTP 510
Query: 120 PSSNVIFKCRTCQGDHLTLY 139
PS N + + + Q L L+
Sbjct: 511 PSYNSLTRMKKRQSPDLMLF 530
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 189 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 246
+D+ + + LS + + + +G + + + + TG +GFA+V FK +++A
Sbjct: 26 DDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEA 83
>SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1295
Score = 29.9 bits (64), Expect = 2.4
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 2 PVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDN--DNKKVKIVRTYKIEKR 59
P AE+ A E+ I Q P SE EN TE + N D K V++++TYK K
Sbjct: 1150 PTAEDEDAEKVPEI-ILQPPSAPDSEDDENCETTETELESHNEQDGKPVRVLQTYKRSK- 1207
Query: 60 VVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKP 119
+ IA+ + + D+AS K T ED D + D P
Sbjct: 1208 --EEKIAEEEMEGRM-DNASGKLKRKEETLIELEDDDGDSDLPPLPPPCYRDEDEDLPTP 1264
Query: 120 PSSNVIFKCRTCQGDHLTLY 139
PS N + + + Q L L+
Sbjct: 1265 PSYNSLTRMKKRQSPDLMLF 1284
>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 111 DGELDG--LKPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 146
DG+ G KPP S + KC C G H C F ++
Sbjct: 1230 DGDTTGNPRKPPQSATVSKCYRCDGKHDPRSCVFSQSK 1267
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 193 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 252
++ I NL E + +L G V + L +++ TG KGF YV F+ + A++
Sbjct: 57 SVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKM 116
Query: 253 LN 254
N
Sbjct: 117 NN 118
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+G + + L ++K TG KGF ++ ++ + A+ + NG
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+G + + L ++K TG KGF ++ ++ + A+ + NG
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 216 GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG-HGYDHLILNVEWSKPPQNN 274
GP+ + + +K+TG + F +V F A + L+G YD I NV KP NN
Sbjct: 481 GPLENVRIPTDKNTGQQRSFGFVEFSSPVSVHYASELLDGIRLYDRAI-NV---KPQSNN 536
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 223 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQN 273
+ K+ + KGF +V F R DAAKAI ++ + W+ N
Sbjct: 544 VVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 193 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 252
A+R+ NL N ++ FG V + + + G KG V F + +A A+Q
Sbjct: 127 ALRVKNLDNLVTNELLEQAFSQFGDVERAVVVCD-VRGRSKGHGIVEFSRKNNAHNAMQK 185
Query: 253 LN 254
++
Sbjct: 186 IS 187
>SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 46 KKVKIVRTYKIEKRVVSKSIAK---RKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITS 102
K +++R Y+IEK +S+AK W KF + PNP T +D F
Sbjct: 559 KGYRVIRVYEIEKNPGLRSVAKMGLNCMWEKFVEQ------PNPQRTEYVDDPKAYFALL 612
Query: 103 KEESQRPDD 111
+S +D
Sbjct: 613 NNDSIEVND 621
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 171 PPSSAGRIPGRDQPPVRRED 190
P RIPG DQP V RED
Sbjct: 630 PVKRVSRIPGNDQPRVSRED 649
>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
Length = 834
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 21 VLPPPSEVVENGLKI-VTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSAS 79
++ S+ +EN KI + E +N+N +++ Y R K +++KT S+ + +
Sbjct: 464 IIDESSKNIENRNKIELLEDAAENENSGIRVYNAYSALCRKEKKPQSEKKTPSETKSALT 523
Query: 80 DKPGPNPATT 89
P+P T
Sbjct: 524 SSKKPSPLAT 533
>SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)
Length = 521
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 55 KIEKRV-VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITS----KEESQRP 109
K KR + S +KT ++ D +DK P+P+ + D + I KE++++
Sbjct: 229 KTSKRPRIGASPVGQKTAARVSDQPTDKSAPSPSGGKTSSDNVLSAIAERLNMKEKTEKS 288
Query: 110 DDGELDGLKPPSSNVIFK 127
D +L L +N+IFK
Sbjct: 289 VDAQLADL---VNNLIFK 303
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN 274
FG V + +K T K F +V + A AIQ +NG L V+ +P N
Sbjct: 285 FGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDAN 344
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 184 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGP 217
P V +DVT S+ S AV D+D+ G GP
Sbjct: 1925 PEVSLDDVTLTVESHASRQAVVEDLDEFTAGLGP 1958
>SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09)
Length = 415
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 47 KVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNV 91
K I+R Y+ ++ + KR W +FG + K GP +N+
Sbjct: 179 KGPIIRQYRSSLALIGYAGRKRPHWMRFGQNPPSK-GPTTVNSNI 222
>SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1074
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 7 FQASWADEVEIDQGVLPPPSEVVENG--LKIVT-EYKYDNDNKKVKIVRTYKIEKRVVSK 63
+++S D+ E+D E+V N +K ++ E KY NKK +RT E ++ +
Sbjct: 448 YESSSDDDAELDVIRNKYLQEIVPNTEEMKFLSVERKY---NKKASTLRTVNTEDMIIER 504
Query: 64 SIAKRKTWSKFGDSASDKPGPN 85
K+ S F +A K P+
Sbjct: 505 PFLTSKSESYFLGNAQQKVAPS 526
>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
Length = 2293
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 18 DQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIA-KRKTWSKFGD 76
D G P V NG VT+ D++ K V T + S+ K+ T S
Sbjct: 717 DAGSASPMGFYVPNGPWGVTKNGGDSNKKAENAVNTTSKATKSEHSSVGIKKVTKSHNNK 776
Query: 77 SASDKPGPNPATTN 90
+SDK GP TN
Sbjct: 777 ESSDKYGPGAEQTN 790
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 201 NFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK--GFAYVHFKFRADAAKAIQSLNG 255
+F V AD++ + G H + + + + GF +V F A+A KA + LNG
Sbjct: 90 SFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFGFVTFNTAAEANKAREKLNG 146
>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
Length = 410
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 26 SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSK 73
S++++N I+ Y+ +N + K+K +RT KI + S+ K W +
Sbjct: 44 SKILQNKETILASYENNNGHIKIKRIRTGKIYR--TSRYFDNDKAWMR 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.133 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,831,240
Number of Sequences: 59808
Number of extensions: 385399
Number of successful extensions: 768
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 81
length of query: 274
length of database: 16,821,457
effective HSP length: 81
effective length of query: 193
effective length of database: 11,977,009
effective search space: 2311562737
effective search space used: 2311562737
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -