GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000367-TA|BGIBMGA000367-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR012677|Nucleotide-binding,
alpha-beta plait
         (274 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    29   0.19 
AY330183-1|AAQ16289.1|  190|Anopheles gambiae odorant-binding pr...    24   4.1  
AJ618925-1|CAF02004.1|  204|Anopheles gambiae odorant-binding pr...    24   4.1  
AY344835-1|AAR05806.1|  334|Anopheles gambiae ICHIT protein.           23   9.5  
AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.           23   9.5  
AY344829-1|AAR05800.1|  334|Anopheles gambiae ICHIT protein.           23   9.5  
AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein prot...    23   9.5  

>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 28.7 bits (61), Expect = 0.19
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 71  WSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCRT 130
           +SK   + S +P P    T +          S  + QRP   +LD    P+++ +++C  
Sbjct: 237 YSKKSTTVSYQPVPTGTPTRMLNGEPASQRPSSSQMQRPKVQQLDTAAAPTNHHLYRCPA 296

Query: 131 C 131
           C
Sbjct: 297 C 297


>AY330183-1|AAQ16289.1|  190|Anopheles gambiae odorant-binding
           protein AgamOBP57 protein.
          Length = 190

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 1   MPVAEEFQASWADEVEIDQGVLPPPSE 27
           +P+AE F     DEVE+  G   P  E
Sbjct: 107 VPLAEGFIQQCFDEVELTDGAFVPSDE 133


>AJ618925-1|CAF02004.1|  204|Anopheles gambiae odorant-binding
           protein OBP14426 protein.
          Length = 204

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 1   MPVAEEFQASWADEVEIDQGVLPPPSE 27
           +P+AE F     DEVE+  G   P  E
Sbjct: 121 VPLAEGFIQQCFDEVELTDGAFVPSDE 147


>AY344835-1|AAR05806.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 90  NVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNV 124
           NVA DV    + +K ESQ P D     L+P ++ +
Sbjct: 74  NVAIDVCDFPVNAKCESQSPGDQTTTTLRPTTTTL 108


>AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 90  NVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNV 124
           NVA DV    + +K ESQ P D     L+P ++ +
Sbjct: 74  NVAIDVCDFPVNAKCESQSPGDQTTTTLRPTTTTL 108


>AY344829-1|AAR05800.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 90  NVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNV 124
           NVA DV    + +K ESQ P D     L+P ++ +
Sbjct: 74  NVAIDVCDFPVNAKCESQSPGDQTTTTLRPTTTTL 108


>AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein
           protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 90  NVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNV 124
           NVA DV    + +K ESQ P D     L+P ++ +
Sbjct: 74  NVAIDVCDFPVNAKCESQSPGDQTTTTLRPTTTTL 108


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,714
Number of Sequences: 2123
Number of extensions: 11113
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 7
length of query: 274
length of database: 516,269
effective HSP length: 63
effective length of query: 211
effective length of database: 382,520
effective search space: 80711720
effective search space used: 80711720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 47 (23.0 bits)