BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000367-TA|BGIBMGA000367-PA|IPR000504|RNA-binding region RNP-1 (RNA recognition motif), IPR012677|Nucleotide-binding, alpha-beta plait (274 letters) Database: bee 429 sequences; 140,377 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 23 2.9 AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 23 3.9 AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 3.9 AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 3.9 >AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly protein 8 protein. Length = 416 Score = 23.0 bits (47), Expect = 2.9 Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 19 QGVLPPPSEVVENGLKIVTEYKY 41 QGV S + N LK++ E+KY Sbjct: 15 QGVTDIHSRNLTNSLKVIYEWKY 37 >AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera ORF for hypotheticalprotein. ). Length = 998 Score = 22.6 bits (46), Expect = 3.9 Identities = 7/25 (28%), Positives = 15/25 (60%) Query: 241 KFRADAAKAIQSLNGHGYDHLILNV 265 +F + KA+ S+N ++H +L + Sbjct: 872 EFALELKKALSSINEQSFNHFVLKM 896 >AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule AbsCAM-Ig7B protein. Length = 1923 Score = 22.6 bits (46), Expect = 3.9 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%) Query: 246 AAKAIQSLNGHGYD-HL 261 AA A+ S GHG+D HL Sbjct: 11 AAAAVTSAGGHGFDAHL 27 >AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member AbsCAM-Ig7A protein. Length = 1919 Score = 22.6 bits (46), Expect = 3.9 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%) Query: 246 AAKAIQSLNGHGYD-HL 261 AA A+ S GHG+D HL Sbjct: 11 AAAAVTSAGGHGFDAHL 27 Database: bee Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 140,377 Number of sequences in database: 429 Lambda K H 0.315 0.133 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 86,802 Number of Sequences: 429 Number of extensions: 3509 Number of successful extensions: 4 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of query: 274 length of database: 140,377 effective HSP length: 57 effective length of query: 217 effective length of database: 115,924 effective search space: 25155508 effective search space used: 25155508 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (22.0 bits) S2: 43 (21.4 bits)
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