Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000367-TA|BGIBMGA000367-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR012677|Nucleotide-binding,
alpha-beta plait
(274 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 146 1e-35
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 144 6e-35
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 52 6e-07
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 52 6e-07
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 52 6e-07
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 50 2e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 48 5e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 7e-06
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 47 1e-05
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 47 1e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 47 2e-05
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 46 4e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 46 4e-05
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 45 5e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 43 3e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 42 6e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 41 0.001
At5g51300.2 68418.m06360 splicing factor-related contains simila... 40 0.001
At5g51300.1 68418.m06359 splicing factor-related contains simila... 40 0.001
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 40 0.002
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 40 0.002
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 40 0.002
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 40 0.002
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 39 0.004
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 38 0.006
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 38 0.006
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 38 0.006
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 38 0.007
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.007
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 38 0.007
At2g47310.1 68415.m05906 flowering time control protein-related ... 38 0.007
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 38 0.007
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 38 0.010
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 38 0.010
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.010
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.010
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 38 0.010
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 38 0.010
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.010
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 37 0.017
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 37 0.017
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 37 0.017
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 37 0.017
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 37 0.017
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 37 0.017
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 36 0.022
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 36 0.022
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.022
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 36 0.022
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 36 0.029
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 36 0.029
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 36 0.029
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 36 0.029
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 36 0.029
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 36 0.039
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 36 0.039
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 36 0.039
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 36 0.039
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 36 0.039
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 36 0.039
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 35 0.051
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 35 0.051
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 35 0.051
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 35 0.051
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 35 0.051
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 35 0.051
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 35 0.051
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 35 0.068
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 35 0.068
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 35 0.068
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 34 0.090
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 34 0.090
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 34 0.090
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 34 0.12
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 34 0.12
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 34 0.12
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.16
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.16
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.16
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 33 0.16
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.16
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 33 0.16
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 33 0.16
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.21
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 33 0.21
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 33 0.21
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.21
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 33 0.27
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.27
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 33 0.27
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 32 0.36
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 32 0.36
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.48
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 32 0.48
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 32 0.48
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 32 0.48
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 31 0.63
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 31 0.63
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 31 0.63
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 31 0.63
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 31 0.63
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 0.84
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 0.84
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 30 1.5
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 30 1.5
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 30 1.5
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 30 1.5
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR... 30 1.5
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 1.5
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 30 1.5
At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit... 30 1.9
At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit... 30 1.9
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 30 1.9
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 30 1.9
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 30 1.9
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 30 1.9
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit... 30 1.9
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 30 1.9
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 29 2.6
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 29 2.6
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 29 2.6
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 29 2.6
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 2.6
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 2.6
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 29 2.6
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 2.6
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 29 2.6
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 29 3.4
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 29 3.4
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 29 3.4
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 3.4
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 3.4
At5g39690.1 68418.m04806 no apical meristem (NAM) protein-relate... 29 4.5
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 29 4.5
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 29 4.5
At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putativ... 29 4.5
At2g30960.1 68415.m03776 expressed protein 29 4.5
At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing ... 29 4.5
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 28 5.9
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 28 5.9
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 28 5.9
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 28 5.9
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 28 5.9
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 28 5.9
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 7.8
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 7.8
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 7.8
At4g20720.1 68417.m03011 dentin sialophosphoprotein-related cont... 28 7.8
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 28 7.8
At1g05090.1 68414.m00512 dentin sialophosphoprotein-related cont... 28 7.8
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 146 bits (354), Expect = 1e-35
Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 12/250 (4%)
Query: 30 ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATT 89
+NG+K V EYK++ ++KKVKI T +++KR ++K +R++W+KFGD+A ++ + T
Sbjct: 6 QNGVKKVIEYKFNEEDKKVKITTTTRVQKRALTKQAVERRSWNKFGDAAHEESS-SYLTM 64
Query: 90 NVAEDVFMQFIT---SKEESQRPDDGELDGLKPPSSNVIFKCRTCQ--GDHLTLYCPFKH 144
ED+ ++ I S E + L P + V+ CR CQ GDH T CP K
Sbjct: 65 RSTEDIILERIRAPGSNAEQSTVSGDSMSQLGKPGA-VLMVCRLCQKKGDHWTSRCPQKD 123
Query: 145 T-QIXXXXXXXXXXXXXXXXXXSNKYIPPS---SAGRIPGRDQPPVRREDVTAIRISNLS 200
+ Y+PPS A R G R D ++R++NLS
Sbjct: 124 LLSLMDEPLTAETSTSTITGTGRAAYVPPSMREGADRKAGGSDMR-SRHDENSVRVTNLS 182
Query: 201 NFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH 260
D+ +L + FG V + ++A ++ T +GF +V F R DA +AI LNG+GYD+
Sbjct: 183 EDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDN 242
Query: 261 LILNVEWSKP 270
LIL VEWS P
Sbjct: 243 LILRVEWSTP 252
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 144 bits (349), Expect = 6e-35
Identities = 100/288 (34%), Positives = 150/288 (52%), Gaps = 30/288 (10%)
Query: 6 EFQASWADEVEIDQGVLPPPSEVV---ENGLKIVTEYKYDNDNKKVKIV---RTYKIEKR 59
+F+ DE E D L PP +V+ ENGLK EYK++++ KVKI R K+
Sbjct: 11 KFRWGEMDEDE-DLDFLLPPKQVIGPDENGLKTTIEYKFNDEENKVKITTRTRVRKLASA 69
Query: 60 VVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFI----TSKEESQRPDDGELD 115
++K +R+ W KFGD+A+++ G + T E++ ++ T +ES+ DG L
Sbjct: 70 RLNKRAMERRNWPKFGDAANEEAGSH-LTMVSTEEILLERPRAPGTKADESKATGDG-LS 127
Query: 116 GLKPPSSNVIFKCRTC--QGDHLTLYCPFKH----TQIXXXXXXXXXXXXXXXXXXSNK- 168
L + V+ CR C +GDH T CP+K T + + K
Sbjct: 128 QLGKGGA-VLMVCRICHKKGDHWTSKCPYKDLAAPTDVFIDKPPTGESSTMSAAPGTGKA 186
Query: 169 -YIPPSSAGRIPGRDQPPV-----RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLY 222
Y+PPS G D+ V RR D ++R++NLS E D+ +L FG V ++Y
Sbjct: 187 AYVPPSMRA---GADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVY 243
Query: 223 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 270
+A ++ TG +GF +V+F R DA +AI LNG+GYD+LIL VEW+ P
Sbjct: 244 VAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATP 291
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 180 GRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVH 239
GR PP D ++ + N++ D+ L +G V +++ +++ TG +GFA+V
Sbjct: 5 GRSGPP-DISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVR 63
Query: 240 FKFRADAAKAIQSLNGHGYDHLILNVEWSK 269
+K++ +A KA++ L+G D + V+++K
Sbjct: 64 YKYKDEAHKAVERLDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 180 GRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVH 239
GR PP D ++ + N++ D+ L +G V +++ +++ TG +GFA+V
Sbjct: 5 GRSGPP-DISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVR 63
Query: 240 FKFRADAAKAIQSLNGHGYDHLILNVEWSK 269
+K++ +A KA++ L+G D + V+++K
Sbjct: 64 YKYKDEAHKAVERLDGRVVDGREITVQFAK 93
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
I NL A +DI + G V +++ K TG KGFA+V F + DAA AI+ NG
Sbjct: 335 IRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNG 394
Query: 256 HGYDHLILNVEWSKP 270
H + + V+W+ P
Sbjct: 395 HMFGKRPIAVDWAVP 409
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+S L A +++ GPV + +L K + +GFA+V F + D +AI+ NG
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 172 PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGH 231
PS GR GR R+ T++ + NL + + D+ + FGPV +YL ++ TG
Sbjct: 21 PSPRGRYGGRS-----RDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGD 75
Query: 232 CKGFAYVHFKFRADAAKAIQSLNGH 256
+GF +V F ADAA A ++G+
Sbjct: 76 PRGFGFVQFMDPADAADAKHHMDGY 100
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + + NL+ + D+ + +G + + K+ G KGF +V+F+ DAA+A++
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVE 87
Query: 252 SLNGHGYD 259
SLNGH +D
Sbjct: 88 SLNGHKFD 95
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.0 bits (109), Expect = 7e-06
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 170 IPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKST 229
+P + A + PP T I ++NL E ++L K F + ++ K +T
Sbjct: 215 VPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTE---EELKKAFSQLGEVIYVKIPAT 271
Query: 230 GHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 271
KG+ YV FK R A +A+Q + G + + WSK P
Sbjct: 272 ---KGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 185 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 244
P E+V + I +L + E + G + + + + K TG +G+ ++ F A
Sbjct: 17 PQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHA 76
Query: 245 DAAKAIQSLNG 255
A + +Q+ NG
Sbjct: 77 AAERTLQTYNG 87
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 171 PPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 230
PPS P + ++ + + +LS EA + ++ FG V + +A +++
Sbjct: 81 PPSKGASSPSKKAV----QESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVN 136
Query: 231 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 272
+G YV FK RADA KA ++G D ++ ++ PP+
Sbjct: 137 LPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPR 178
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 171 PPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 230
PPS P + ++ + + +LS EA + ++ FG V + +A +++
Sbjct: 81 PPSKGASSPSKKAV----QESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVN 136
Query: 231 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 272
+G YV FK RADA KA ++G D ++ ++ PP+
Sbjct: 137 LPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPR 178
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 172 PSSAGRIPGRDQPPVRREDV-TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 230
PS GR G R D+ T++ + NL + + D+ + FGPV +YL ++ TG
Sbjct: 21 PSPRGRFGGS-----RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75
Query: 231 HCKGFAYVHFKFRADAAKAIQSLNGH 256
+GF ++ F ADAA+A ++G+
Sbjct: 76 DPRGFGFIQFMDPADAAEAKHQMDGY 101
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
+ + I NL A D+ D + FGP+ +YL + TG +GF +V +++ DAA+A++
Sbjct: 47 SGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMK 106
Query: 252 SLN 254
+N
Sbjct: 107 RMN 109
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+S LS + + + L FG + + L ++ T KGF ++ F DA KA++SL+G
Sbjct: 11 VSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDG 70
Query: 256 HGYDHLILNVEWSK 269
D ++ VE +K
Sbjct: 71 KIVDGRLIFVEVAK 84
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 169 YIPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKS 228
++ P + + P R Q E T + +S LS + FG V + ++
Sbjct: 37 FLSPQAESQTPARPQA----EPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRV 92
Query: 229 TGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN 274
+G+ KGF +V + D+AK I ++G D ++ E+++P + +
Sbjct: 93 SGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQS 138
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 180 GRDQPPVRREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFA 236
G D PV R + + + NLS A + L + G V + + +K TG +GF
Sbjct: 84 GDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 143
Query: 237 YVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 271
+V A+ A Q NG+ ++ L V PP
Sbjct: 144 FVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178
Score = 34.7 bits (76), Expect = 0.068
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ NLS + +++L G V + + ++ +G KGF +V + KAI SLNG
Sbjct: 253 VGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 312
Query: 256 HGYDHLILNVE--WSKPPQ 272
D + V ++PP+
Sbjct: 313 ADLDGRQIRVSEAEARPPR 331
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 180 GRDQPPVRREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFA 236
G D PV R + + + NLS A + L + G V + + +K TG +GF
Sbjct: 84 GDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 143
Query: 237 YVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 271
+V A+ A Q NG+ ++ L V PP
Sbjct: 144 FVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178
Score = 34.7 bits (76), Expect = 0.068
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ NLS + +++L G V + + ++ +G KGF +V + KAI SLNG
Sbjct: 261 VGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 320
Query: 256 HGYDHLILNVE--WSKPPQ 272
D + V ++PP+
Sbjct: 321 ADLDGRQIRVSEAEARPPR 339
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 168 KYIPPSSA-GRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKE 226
K+ P SSA PG + T + +SNL +DI L FG V ++ + K+
Sbjct: 33 KHQPSSSAKSSAPGGGSGGLAPSKST-LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKD 91
Query: 227 KSTGHCKGFAYVHFKFRADAAKAIQSLN 254
+ T +G A+V + R DAAKA +S++
Sbjct: 92 RHTRQSRGVAFVLYVSREDAAKAARSMD 119
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + +S LS E + D + FG + + + +K KGFA++ ++ +A KAIQ
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 252 SLNGHGYDHLILNVEWSK 269
++G D ++ VE +K
Sbjct: 137 GMHGKFLDGRVIFVEEAK 154
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 185 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 244
P R + I +S + E DI + FG + L L ++ +G+ KG+A + ++ +
Sbjct: 88 PQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKE 147
Query: 245 DAAKAIQSLNGHGYDHLILNVEWS 268
+A AI ++NG ++V+W+
Sbjct: 148 EAQSAISAMNGAELLTQNVSVDWA 171
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 254
I L E D+ DL + G + ++ L K++ +G KG+A+V FK + A KAI+ L+
Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELH 178
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 191 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 250
V A+ + N+ + +L + G V K+ K G + F +VH+ R+ A KA+
Sbjct: 291 VKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGK--GGKRDFGFVHYAERSSALKAV 348
Query: 251 QSLNGHGYDHLILNVEWSKP 270
+ + + L V +KP
Sbjct: 349 KDTERYEVNGQPLEVVLAKP 368
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 184 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 243
P + T + + NLS + +++ + FG + ++ G KGF +V+F+
Sbjct: 216 PSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENS 274
Query: 244 ADAAKAIQSLNGHGYD 259
DAA+A+ +LNG +D
Sbjct: 275 DDAARAVDALNGKTFD 290
Score = 35.9 bits (79), Expect = 0.029
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 184 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 243
P +R+ V I I NL + + FGP+ +A + S G KG+ +V +
Sbjct: 125 PSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTD 183
Query: 244 ADAAKAIQSLNG 255
A AI LNG
Sbjct: 184 EAAQGAIDKLNG 195
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/67 (19%), Positives = 34/67 (50%)
Query: 188 REDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 247
++ T++ + +L ++ + + G V + + ++ +T G+ YV++ DA+
Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100
Query: 248 KAIQSLN 254
+A+ LN
Sbjct: 101 RALNELN 107
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/80 (22%), Positives = 40/80 (50%)
Query: 191 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 250
++++ + S+ E + + FG V + + + T G+ YV F + DA A+
Sbjct: 76 ISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAV 135
Query: 251 QSLNGHGYDHLILNVEWSKP 270
+++NG +D + V++ +P
Sbjct: 136 EAMNGKFFDGRFILVKFGQP 155
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 183 QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 242
+PP + D T + I L + + +L FG + + K++ TG KG+ +V +
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 243 RADAAKAIQSLNGHGYD--HLILNVEWSKPP 271
A A+Q++NG+ ++ L + + PP
Sbjct: 531 VQMANTAVQAMNGYRFEGRTLAVRIAGKSPP 561
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 183 QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 242
+PP + D T + I L + + +L FG + + K++ TG KG+ +V +
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 243 RADAAKAIQSLNGHGYD--HLILNVEWSKPP 271
A A+Q++NG+ ++ L + + PP
Sbjct: 531 VQMANTAVQAMNGYRFEGRTLAVRIAGKSPP 561
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ-SLN 254
+ NL E + + + FGPV + L + TG CKGF ++ F + + +KA Q +LN
Sbjct: 269 VGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF-VQLEHSKAAQIALN 327
Query: 255 G 255
G
Sbjct: 328 G 328
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
+ + + A E D+ G V ++ + +EK +G KG+A+V F+ + AA+AI +L
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 254 N 254
N
Sbjct: 154 N 154
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 191 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 250
V A+ I NL + + L + G + K+ + K + +VH+ R +A+
Sbjct: 267 VKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRAL 326
Query: 251 QSLNGHGYDHLILNVEWSKP 270
++ + D +L+ +KP
Sbjct: 327 KNTERYEIDGHMLDCTLAKP 346
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
I LS E + D FG V ++ +A +K +G +GF +V F DA A +++G
Sbjct: 45 IGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDG 104
Query: 256 HG 257
G
Sbjct: 105 KG 106
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I + L + E I +L++ FGP+ L K++ TG+ KG+A+ ++ + A +L
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 254 NG 255
NG
Sbjct: 437 NG 438
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 190 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 249
D + + NL A E ++ + FG + +++L +K T +G AY+ + AA+A
Sbjct: 259 DTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARA 318
Query: 250 IQSLNGHGYDHLILNV 265
++ L+ + +L++
Sbjct: 319 MEELDNSSFQGRLLHI 334
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + + N++ A + ++ L FG + + L K K+ G G+A+V F + +A A +
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPK-KNIGQYAGYAFVEFVTKQEALNAKK 727
Query: 252 SL-NGHGYD-HLILNVEWS 268
+L + H Y HL+L EW+
Sbjct: 728 ALASTHFYGRHLVL--EWA 744
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 191 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 250
+T + S LS + + + L F P +L K++ T KGF ++ F+ DA KA+
Sbjct: 70 LTCVSNSGLSAYTTDQSLRQL---FAPFARLI--KDQQTQRPKGFGFITFESEDDAQKAL 124
Query: 251 QSLNGHGYDHLILNVEWSK 269
++LNG + ++ VE +K
Sbjct: 125 KALNGKIVNGRLIFVETAK 143
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/77 (22%), Positives = 38/77 (49%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I + LS + D++ FG + + E+ TG +GF ++ F R ++I+ +
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 254 NGHGYDHLILNVEWSKP 270
+G + +++V ++P
Sbjct: 69 HGRDFGDRVISVNRAEP 85
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 187 RREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 243
+RED ++ I + +LS +A + D F + ++ TG +GF +V F+ +
Sbjct: 140 QREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQ 199
Query: 244 ADAAKAIQSLNGHGYDHLILNVEWS 268
DA AI +NG + W+
Sbjct: 200 QDAQTAINEMNGKWVSSRQIRCNWA 224
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 172 PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTG 230
P +G +P P R ++ N+ E + ++ GP+ L K+KS+
Sbjct: 47 PLPSGNLPPGFDPTTCR----SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS- 101
Query: 231 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 268
+ +VH+ R A+ AI +LNG + V W+
Sbjct: 102 ----YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 173 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDL--VKGFGPVHKLYLAKEKSTG 230
S GR + P T + + NLS + D+ L G G + ++ + ++K
Sbjct: 250 SEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK--- 306
Query: 231 HCKGFAYVHFKFRADAAKAIQSLNGHGY 258
GF +V + +AA AIQ N +
Sbjct: 307 ---GFGFVRYNTHDEAALAIQMGNAQPF 331
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + I N+S + E + +L G + K+ + +K+T GF +V F R D A++
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
Query: 252 SLNGHGYDHLILNVEW 267
++G D + V++
Sbjct: 94 YISGTILDDRPIRVDF 109
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 258
FGPV +Y+ ++ +G +GFA+V F DA +A +S+N +
Sbjct: 70 FGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSF 113
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ LS + E D+ ++ +GP+H + + +E+++G +GFA++ F DAA+ +
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFP-TVDAARTMMDRIE 360
Query: 256 HGYDHLILN 264
H D ++L+
Sbjct: 361 H--DGIVLD 367
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 217 PVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH--LILNVEWSK 269
P+ L L ++K T +GFA+VHF DA KA+++ N + IL V ++K
Sbjct: 483 PIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 185 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 244
PV+ D + + L+ + +++++ +G + +Y+A + C+G+A+V F +
Sbjct: 200 PVQLPDNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMK-ICRGYAFVQFSCKE 258
Query: 245 DAAKAIQSLNG 255
A AI++LNG
Sbjct: 259 MALAAIKALNG 269
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 191 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 250
+ + ++ +S A E DI + + +G V ++ L K+K TG + ++ +K + AI
Sbjct: 109 IAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAI 168
Query: 251 QSL 253
+L
Sbjct: 169 AAL 171
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ +S + E + +G V K+ + +K KGFAYV F + +A KA+ LN
Sbjct: 25 VKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNA 84
Query: 256 HGYDHLILNVEWSKPPQNN 274
D ++ ++ +K ++N
Sbjct: 85 QLVDGRVVILDTTKAAKHN 103
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 204 VEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 262
+++D + D + FG + + K++STG +GF YV F DA A++ H + I
Sbjct: 14 IDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK--GEHFLGNRI 71
Query: 263 LNVEWSKPPQ 272
L V+ + P +
Sbjct: 72 LEVKVATPKE 81
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/77 (24%), Positives = 41/77 (53%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I + NL E + FG + ++ L K+++ KG+A++ F + DA AI+++
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 254 NGHGYDHLILNVEWSKP 270
+ Y+ ++ ++ +KP
Sbjct: 102 DRRMYNGRMIYIDIAKP 118
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I + NL E +++DL +GPV ++ L K G+A+V F+ DA AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 254 NGHGYDHLILNVE 266
+G+ +D L VE
Sbjct: 66 DGYDFDGHHLRVE 78
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I + NL E +++DL +GPV ++ L K G+A+V F+ DA AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 254 NGHGYDHLILNVE 266
+G+ +D L VE
Sbjct: 66 DGYDFDGHHLRVE 78
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+S LS + D FG + + ++ +G KGF +V + DA KA +N
Sbjct: 38 VSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNA 97
Query: 256 HGYDHLILNVEWSKP 270
D ++ V+ ++P
Sbjct: 98 KFLDGWVIFVDPARP 112
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 184 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 243
P RR V + + NL A + D+ K FG + +A + G +G+ +V F+
Sbjct: 104 PDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQE 162
Query: 244 ADAAKAIQSLN 254
A AIQ+LN
Sbjct: 163 DAAHAAIQTLN 173
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 189 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 248
E T + + NL E + + FG + L +AK+++ C+G+A+V+F DA +
Sbjct: 198 EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARR 256
Query: 249 AIQSLNG 255
A +++NG
Sbjct: 257 AAETVNG 263
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 191 VTA-IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 249
VTA + + +L E + D F + + L K+ S+G + Y +F R DA A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 250 IQSLNGHGYDHLILNVEWS 268
I+ N + ++ V WS
Sbjct: 82 IEKKNNSLLNGKMIRVMWS 100
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
+++ + +L E+ + DL PVH L + ++ T G+AYV+F DA++A++
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 252 SLN 254
SLN
Sbjct: 104 SLN 106
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + + NL + ++ +G + + K++S G+ + F +V+F AA A++
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQS-GNSRSFGFVNFVSPEAAAVAVE 283
Query: 252 SLNG 255
+NG
Sbjct: 284 KMNG 287
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 178 IPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 237
+ RD P R + I NL + + FG + +A + G KG+ +
Sbjct: 119 LSNRD-PSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGF 176
Query: 238 VHFKFRADAAKAIQSLNG 255
V F+ A AI LNG
Sbjct: 177 VQFEKEETAQAAIDKLNG 194
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
+ + NL E +++DL +GPV ++ L K G+A+V F DA AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 254 NGHGYDHLILNVE 266
+G+ +D L VE
Sbjct: 66 DGYDFDGHRLRVE 78
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
+ + NL E +++DL +GPV ++ L K G+A+V F DA AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 254 NGHGYDHLILNVE 266
+G+ +D L VE
Sbjct: 66 DGYDFDGHRLRVE 78
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
+ + NL E +++DL +GPV ++ L K G+A+V F DA AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 254 NGHGYDHLILNVE 266
+G+ +D L VE
Sbjct: 66 DGYDFDGHRLRVE 78
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 36.7 bits (81), Expect = 0.017
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 183 QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 242
+P V R++ TA ISNLS A E DI G V + + K TG +G AY F
Sbjct: 643 KPKVYRDECTAF-ISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
Query: 243 RADAAKAI 250
A AI
Sbjct: 702 DEHLAAAI 709
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 36.7 bits (81), Expect = 0.017
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 183 QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 242
+P V R++ TA ISNLS A E DI G V + + K TG +G AY F
Sbjct: 643 KPKVYRDECTAF-ISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
Query: 243 RADAAKAI 250
A AI
Sbjct: 702 DEHLAAAI 709
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 173 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 232
SS G +P R T + I LS +A + D FG V + ++ TG
Sbjct: 16 SSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRS 75
Query: 233 KGFAYVHFKFRADAAKAIQSLNG 255
+GF +V+F A AI ++G
Sbjct: 76 RGFGFVNFNDEGAATAAISEMDG 98
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 173 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 232
SS G +P R T + I LS +A + D FG V + ++ TG
Sbjct: 16 SSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRS 75
Query: 233 KGFAYVHFKFRADAAKAIQSLNG 255
+GF +V+F A AI ++G
Sbjct: 76 RGFGFVNFNDEGAATAAISEMDG 98
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 36.7 bits (81), Expect = 0.017
Identities = 23/96 (23%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 182 DQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 241
+ PPV+ + + I+ LS + E + +GFG + ++ + +K + KG+A++ +
Sbjct: 275 ESPPVKTKKLF---ITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYT 331
Query: 242 FRADAAKAIQSLNG---HGYDHLILNVEWSKPPQNN 274
A A++ +NG +G+ ++++V +KP + N
Sbjct: 332 TEEAAGTALKEMNGKIINGW-MIVVDVAKTKPFRQN 366
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + + NLS + ++ +G + + ++ G + F +V+F+ DAA+A++
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVE 283
Query: 252 SLNGHGYD 259
+LNG +D
Sbjct: 284 ALNGKKFD 291
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 187 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 246
RR V + + NL + + G G + +A + G +G+ +V F A
Sbjct: 129 RRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSA 187
Query: 247 AKAIQSLNG 255
AI+ LNG
Sbjct: 188 KNAIEKLNG 196
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 184 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 243
PP++ + T + I + + E +I+ FG V ++ +A+ K TG K F ++ F+
Sbjct: 53 PPLQNK-ATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDP 111
Query: 244 ADAAKAIQSLNGHGYDHLILNVEWSKP 270
A A ++N + +L V +P
Sbjct: 112 EVAEIAAGAMNDYLLMEHMLKVHVIEP 138
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 179 PGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 238
P D P + + +S L+ + E+ I + +GP+ +++L ++ T KG+A++
Sbjct: 126 PNND-PNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFI 184
Query: 239 HFKFRADAAKAIQSLNGHGYD--HLILNVEWSKPPQN 273
+ D A + +G D ++++VE + N
Sbjct: 185 EYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPN 221
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ NL E D+ + + FG V + + +++ TG CKGF +V F DA A+ +LNG
Sbjct: 289 VGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-NLNG 346
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + + NL A +AD+ L FG + + K+ G + F +V+F+ A AI+
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 252 SLNGHGYDHLILNV 265
+NG D L+V
Sbjct: 178 KMNGVVVDEKELHV 191
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 187 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 246
RR + + I LS E + + G V + + ++ + KGF +V F +A
Sbjct: 29 RRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEA 88
Query: 247 AKAIQSLNGHGYDHLILNVEWSKPPQN 273
KA+ NG + + V+++K Q+
Sbjct: 89 QKALMEFNGQQLNGRTIFVDYAKAKQS 115
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 35.9 bits (79), Expect = 0.029
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 185 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 244
P+ I ++N+ A + + FG V K ++ + +TG G AY+ F R
Sbjct: 509 PLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFT-RK 567
Query: 245 DAAKAIQSLNGHGYDHLILNVEWSKPPQN 273
+AA+ SL+G + IL + QN
Sbjct: 568 EAAENALSLDGTSFMSRILKIVKGSNGQN 596
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ NL A + L + G V + + +K TG +GF +V ++ A Q NG
Sbjct: 95 VGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNG 154
Query: 256 HGYDHLILNVEWSKPP 271
+ D L V PP
Sbjct: 155 YELDGRPLRVNAGPPP 170
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
+ + NLS + ++ L G V + + ++ +G KGF +V + + AI+SL
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 254 NGHGYDHLILNVE--WSKPPQ 272
+G D + V ++PP+
Sbjct: 266 DGADLDGRQIRVSEAEARPPR 286
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 35.9 bits (79), Expect = 0.029
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 170 IPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKS 228
I P +G +P P R ++ + N+ E + ++ G GPV L KEKS
Sbjct: 36 IEPIPSGNLPPGFDPSTCR----SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS 91
Query: 229 TGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 268
+ + +VH+ R A AI SLNG + V W+
Sbjct: 92 S-----YGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWA 126
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 173 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 232
S G+ + P T + + NL+ + D+ G + +E
Sbjct: 241 SEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAG----VIEEVRVQRD 296
Query: 233 KGFAYVHFKFRADAAKAIQSLNGHGY 258
KGF +V + +AA AIQ N H Y
Sbjct: 297 KGFGFVRYSTHVEAALAIQMGNTHSY 322
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 226 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 268
++ TG +GF +V F+ + DA AI + G + W+
Sbjct: 173 DQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + + L + +A+I+ ++ +G V ++ E+ +G KG+ V F A AA +
Sbjct: 202 TMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKE 261
Query: 252 SLNGHGYDHLILNVEWSKP 270
+NG ++ V ++ P
Sbjct: 262 GMNGFIFNGKACVVAFASP 280
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 35.5 bits (78), Expect = 0.039
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + I LS E + D F V + + K TG +G+ +V+F A AI
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 252 SLNGHGYDHLILNVEWSK 269
++NG + ++V +K
Sbjct: 91 AMNGQELNGFNISVNVAK 108
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I + L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 254 NG 255
NG
Sbjct: 421 NG 422
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I + L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 254 NG 255
NG
Sbjct: 421 NG 422
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I + L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 254 NG 255
NG
Sbjct: 421 NG 422
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 35.5 bits (78), Expect = 0.039
Identities = 23/84 (27%), Positives = 35/84 (41%)
Query: 171 PPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 230
P S GR R + T + ++ LS + D++ G V +L E T
Sbjct: 50 PSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTR 109
Query: 231 HCKGFAYVHFKFRADAAKAIQSLN 254
+GFA+V DA + I+ LN
Sbjct: 110 VSRGFAFVTMSSLKDAERCIKYLN 133
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 35.5 bits (78), Expect = 0.039
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 187 RREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLY----LAKEKSTGHCKGFAYVH 239
+RED ++ I + +LS +A + D F Y + ++ TG +GF +V
Sbjct: 140 QREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVS 199
Query: 240 FKFRADAAKAIQSLNGHGYDHLILNVEWS 268
F+ + DA AI +NG + W+
Sbjct: 200 FRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 172 PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTG 230
P +G +P P R ++ N+ E + ++ GP+ L K+KS+
Sbjct: 47 PLPSGNLPPGFDPTTCR----SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS- 101
Query: 231 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 268
+ +VH+ R A+ AI +LNG + V W+
Sbjct: 102 ----YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 173 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDL--VKGFGPVHKLYLAKEKSTG 230
S GR + P T + + NLS + D+ L G G + ++ + ++K
Sbjct: 254 SEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK--- 310
Query: 231 HCKGFAYVHFKFRADAAKAIQSLNGHGY 258
GF +V + +AA AIQ N +
Sbjct: 311 ---GFGFVRYNTHDEAALAIQMGNAQPF 335
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 35.1 bits (77), Expect = 0.051
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 191 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 250
++++ + S+ E + + FG V + + + T G+ YV F + DA A+
Sbjct: 57 ISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAV 116
Query: 251 QSLNG 255
+++NG
Sbjct: 117 EAMNG 121
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 35.1 bits (77), Expect = 0.051
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 171 PPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 230
P S G G D R + + ++ A E +I + G V ++ L K+K TG
Sbjct: 101 PISDHGSFTGTDVSD--RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTG 158
Query: 231 HCKGFAYVHFKFRADAAKAIQSLN 254
+G +V + DA +AI++L+
Sbjct: 159 QQQGCCFVKYATSKDADRAIRALH 182
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 35.1 bits (77), Expect = 0.051
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 171 PPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 230
P S G G D R + + ++ A E +I + G V ++ L K+K TG
Sbjct: 101 PISDHGSFTGTDVSD--RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTG 158
Query: 231 HCKGFAYVHFKFRADAAKAIQSLN 254
+G +V + DA +AI++L+
Sbjct: 159 QQQGCCFVKYATSKDADRAIRALH 182
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 35.1 bits (77), Expect = 0.051
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
E D+ + +G + + L ++K TG KGFA++ ++ + A+ +LNG
Sbjct: 49 EGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNG 99
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.1 bits (77), Expect = 0.051
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 187 RREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 243
+RED ++ I + +LS +A + F + ++ TG +GF +V F+ +
Sbjct: 136 QREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQ 195
Query: 244 ADAAKAIQSLNGHGYDHLILNVEWS 268
DA AI +NG + W+
Sbjct: 196 QDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 34.3 bits (75), Expect = 0.090
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 170 IPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKS 228
+ P +G +P P R ++ + N+ E + ++ GPV L K+KS
Sbjct: 41 LEPVPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS 96
Query: 229 TGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 268
+ + +VH+ R AA AI SLNG + V W+
Sbjct: 97 S-----YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWA 131
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 173 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 232
S G+ ++ P T + + NL+ + D+ G + +E
Sbjct: 246 SEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAG----VIEEVRVQRD 301
Query: 233 KGFAYVHFKFRADAAKAIQSLNGHGY 258
KGF +V + +AA AIQ N Y
Sbjct: 302 KGFGFVRYNTHPEAALAIQMGNTQPY 327
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 213 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
+G+G + + + +K+TG KGF +V FK R A +A++
Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 213 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
+G+G + + + +K+TG KGF +V FK R A +A++
Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 34.7 bits (76), Expect = 0.068
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 194 IRISNL-SNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 252
I + NL S E + D+ G + + L K KS G + FAY+ F+ +A AI
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKL-KRKSDGKSRQFAYIGFRTEQEAQDAITY 62
Query: 253 LNGHGYDHLILNVEWSKPP 271
+N D ++VE + PP
Sbjct: 63 VNKCFIDTYRISVEVADPP 81
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 34.7 bits (76), Expect = 0.068
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 199 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG--H 256
+ NF E DL + F ++ KS G+A+V+F+ DA AI+ L+
Sbjct: 6 VGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 257 GYDHLILNVEWSK 269
GY+ L+VEW+K
Sbjct: 61 GYEKRRLSVEWAK 73
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 213 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLIL-NVEWSKP 270
+ +G + + + +K TG KG+ +V FK R A +A++ Y+ +++ N+ KP
Sbjct: 429 ESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLASEKP 487
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 34.3 bits (75), Expect = 0.090
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ +L + +A+++ + +G V ++ EK++G KG+ V F A+ +LNG
Sbjct: 238 VGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNG 297
Query: 256 HGYDHLILNVEWSKP 270
+ ++ VE++ P
Sbjct: 298 YPFNGRPCVVEYASP 312
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/77 (22%), Positives = 37/77 (48%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I + LS E ++ +G + + + + TG +GF ++ F R A AI+ +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 254 NGHGYDHLILNVEWSKP 270
+G + +++V ++P
Sbjct: 74 HGRELGNKVISVNKAEP 90
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/77 (22%), Positives = 37/77 (48%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
I + LS E ++ +G + + + + TG +GF ++ F R A AI+ +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 254 NGHGYDHLILNVEWSKP 270
+G + +++V ++P
Sbjct: 74 HGRELGNKVISVNKAEP 90
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 171 PPSSAGRIPGRDQPPVRREDV-TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKST 229
P S GR R + E+ T + ++ LS + D++ G V +L E T
Sbjct: 50 PSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRT 109
Query: 230 GHCKGFAYVHFKFRADAAKAIQSLN 254
+GFA+V DA + I+ LN
Sbjct: 110 RVSRGFAFVTMSSLKDAERCIKYLN 134
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + + NLS + + + G+G V + +++ T +GF +V + ++A A+
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 252 SLNG 255
++G
Sbjct: 63 GMDG 66
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 205 EADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
E + D L K F +AK +K TG KG+ +V F AD A A++ +NG
Sbjct: 147 EVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNG 200
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 264
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 265 V 265
V
Sbjct: 79 V 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 264
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 265 V 265
V
Sbjct: 79 V 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 264
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 265 V 265
V
Sbjct: 79 V 79
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 191 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 250
++ + + NL E +++D + FG V +++A+ G+A++ F+ DA AI
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPP-----GYAFLDFEDPRDARDAI 55
Query: 251 QSLNG 255
++L+G
Sbjct: 56 RALDG 60
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 33.5 bits (73), Expect = 0.16
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 168 KYIPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEK 227
K PS R P + + I NL+ E DI L ++ + L K K
Sbjct: 238 KTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNK 296
Query: 228 STGHCKGFAYVHFKFRADAAKAIQ 251
TG KG+A+V FK A A++
Sbjct: 297 ETGEFKGYAHVDFKDSVSVAIALK 320
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/77 (24%), Positives = 35/77 (45%)
Query: 193 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 252
++ + +LS E D+ D PV ++L + TG +AY++F A+ A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 253 LNGHGYDHLILNVEWSK 269
LN + + WS+
Sbjct: 82 LNHSDLKGKAMRIMWSQ 98
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 189 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 248
+D T + + NL + + L +G V + + ++ G +GF +V+F +A K
Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKK 257
Query: 249 AIQSLNG 255
A++SL G
Sbjct: 258 AMESLCG 264
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 259
E I+ FG V + ++ TG KGF +V FK AI +NG D
Sbjct: 57 EQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELD 111
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 199 LSNFAVEADIDDLVKGF---GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ A D D L + F G V + ++ TG +GF +V F A+ AIQ+L+G
Sbjct: 44 IGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDG 103
Query: 256 HGYDHLILNVEWS 268
++ V ++
Sbjct: 104 RDLHGRVVKVNYA 116
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 254
FG + + + +K+TG KG+ +V FK A +A Q++N
Sbjct: 45 FGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ N+ A E + ++ GPV L ++ TG KG+ + +K A A ++L
Sbjct: 13 VGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQS 72
Query: 256 HGYDHLILNVEWSK 269
+ + L V++++
Sbjct: 73 YEINGRQLRVDFAE 86
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
+G V + +AKEK TG +GF +V F D KA++
Sbjct: 29 YGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 183 QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 242
Q P DV ++ I +L + E I + G + + K TG +G+ ++ F
Sbjct: 51 QNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVS 110
Query: 243 RADAAKAIQSLNG 255
+ A + +Q+ NG
Sbjct: 111 HSVAERVLQTYNG 123
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 194 IRISNLSNFAVEADIDDLVKG-FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 252
I + +L+ + + D K +G V + +++TG KG+ +V F + +A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 253 LNG 255
+NG
Sbjct: 216 MNG 218
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 257
+ D+ FG V + ++ +G +GF +V FK AI+ +NG G
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGSG 71
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 32.7 bits (71), Expect = 0.27
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 181 RDQPPVRREDVTAIRISNL--SNFAVEADIDDLVKGFGP--VHKLYLAKEKSTGHCKGFA 236
R Q R E+ R +N+ N E D+L K FG V + +G+ + F
Sbjct: 213 RRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFG 272
Query: 237 YVHFKFRADAAKAIQSLNG 255
+V+F+ AA A++ +NG
Sbjct: 273 FVNFECTEAAASAVEKMNG 291
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 178 IPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 237
+ RD P R I I NL + + FG + +A + TG KG+ +
Sbjct: 123 LSNRD-PSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGF 180
Query: 238 VHFKFRADAAKAIQSLNG 255
V F+ A AI LNG
Sbjct: 181 VQFEKEESAQAAIDKLNG 198
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
+++ +L EA + DL K V + + ++++ G+AY++F DA +A++
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 252 SLN 254
+LN
Sbjct: 108 ALN 110
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/77 (22%), Positives = 38/77 (49%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
I L+ + + D + +G + + + +K +G +GF ++ F + +AI ++NG
Sbjct: 11 IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNG 70
Query: 256 HGYDHLILNVEWSKPPQ 272
D + V+ ++P Q
Sbjct: 71 MDLDGRTITVDKAQPHQ 87
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 262
+G + + + +K TG KGF +V FK R A A+++ Y+ +
Sbjct: 186 YGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTV 233
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 206 ADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 258
A++++ VK H + + + H +G V FK R DA K I+++NG Y
Sbjct: 427 AELEEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNGRWY 479
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 197 SNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
+NLS AD+++ K G V + + + G +GF +V F +A KA++
Sbjct: 302 ANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 201 NFAVEADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
N E + +L F P K+ AK +K+TG K F ++ + +A A AI ++NG
Sbjct: 345 NIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNG 402
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 201 NFAVEADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
N E + +L F P K+ AK +K+TG K F ++ + +A A AI ++NG
Sbjct: 336 NIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNG 393
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ LS ++ + FG V + + ++ TG +GF +V F A AI+ ++G
Sbjct: 39 VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ LS ++ + FG V + + ++ TG +GF +V F A AI+ ++G
Sbjct: 39 VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 259
+G V + ++ TG +GF +V FK AI+ +NG D
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLD 75
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 259
+G V + ++ TG +GF +V FK AI+ +NG D
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLD 75
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/83 (24%), Positives = 35/83 (42%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T + NL A + +++ F + + + TG +GFA+V D I
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 252 SLNGHGYDHLILNVEWSKPPQNN 274
+L+G Y L V ++ P+ N
Sbjct: 145 NLDGTEYLGRALKVNFADKPKPN 167
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/77 (22%), Positives = 35/77 (45%)
Query: 179 PGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 238
P ++ P+ E + + NLS + + G V + + TG +G+ +V
Sbjct: 164 PKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
Query: 239 HFKFRADAAKAIQSLNG 255
+ +A+ A++SL+G
Sbjct: 224 CYSSKAEMETALESLDG 240
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
+ + N +D++ L FG V ++ + KS G+A+V+F+ DA AI+
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KS-----GYAFVYFEDERDAEDAIRRT 55
Query: 254 NG--HGYDHLILNVEWSK 269
+ GY L+VEW+K
Sbjct: 56 DNTTFGYGRRKLSVEWAK 73
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/71 (26%), Positives = 33/71 (46%)
Query: 185 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 244
PV++ + + N+ A + D+ + FG V + +++ TG +G YV
Sbjct: 101 PVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSIN 160
Query: 245 DAAKAIQSLNG 255
A AI SL+G
Sbjct: 161 SAKIAIASLDG 171
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 198 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 257
N A E+D++ L + +G V ++ + GFA+V+ + DA AI++L+
Sbjct: 8 NFEYDARESDLERLFRKYGKVERVDMKA--------GFAFVYMEDERDAEDAIRALDRFE 59
Query: 258 YDHL--ILNVEWSK 269
Y L VEW+K
Sbjct: 60 YGRTGRRLRVEWTK 73
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 198 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 257
N A E+D++ L + +G V ++ + GFA+V+ + DA AI++L+
Sbjct: 8 NFEYDARESDLERLFRKYGKVERVDMKA--------GFAFVYMEDERDAEDAIRALDRFE 59
Query: 258 YDHL--ILNVEWSK 269
Y L VEW+K
Sbjct: 60 YGRTGRRLRVEWTK 73
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK-AIQS 252
IR+ +L A A ++ + K FGP+ K + +A+V F+ ADAAK AIQ+
Sbjct: 552 IRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNYWYAFVEFE-EADAAKRAIQA 610
Query: 253 --LNGHGY 258
LN G+
Sbjct: 611 SPLNVDGH 618
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 234 GFAYVHFKFRADAAKAIQSLNG--HGYDHLILNVEWSK 269
G+A+V+F+ DA AI+ + GY L+VEW+K
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 47
>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 198 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 256
N+SN +E +D +KG +H L L+ K +AD +++SLNGH
Sbjct: 766 NISNSGIEWITEDCIKGLHNLHDLCLSGCKRLVSLPELPRSLKILQADDCDSLESLNGH 824
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T I + L + + D+ FG + + + K G +V F R +A +A++
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCG------FVQFVNRPNAEEALE 359
Query: 252 SLNGHGYDHLILNVEWSKPPQN 273
LNG + + W + P N
Sbjct: 360 KLNGTVIGKQTVRLSWGRNPAN 381
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
T I + L + + D+ FG + + + K G +V F R +A +A++
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCG------FVQFVNRPNAEEALE 357
Query: 252 SLNGHGYDHLILNVEWSKPPQN 273
LNG + + W + P N
Sbjct: 358 KLNGTVIGKQTVRLSWGRNPAN 379
>At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 207 DIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 258
DI + + FG V L + + H G YV FK AA A+Q+L G Y
Sbjct: 84 DIFEELNKFGEVESLNVC-DNLADHMIGNVYVLFKEEDHAAAALQALQGRFY 134
>At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 207 DIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 258
DI + + FG V L + + H G YV FK AA A+Q+L G Y
Sbjct: 84 DIFEELNKFGEVESLNVC-DNLADHMIGNVYVLFKEEDHAAAALQALQGRFY 134
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 209 DDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 268
DDL FG +L K + C +V + RA A +A+ LNG + + W
Sbjct: 292 DDLKSVFGQFGELVHVKIPAGKRC---GFVQYANRACAEQALSVLNGTQLGGQSIRLSWG 348
Query: 269 KPPQN 273
+ P N
Sbjct: 349 RSPSN 353
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 223 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ +++TG KG+ +V F ++ +A+ +NG
Sbjct: 205 VVNDRTTGRSKGYGFVRFADESEQIRAMTEMNG 237
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 182 DQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 241
++ P E + + NL ++ L G V + + ++ TG +GF +V
Sbjct: 234 ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMS 293
Query: 242 FRADAAKAIQSLNGHGYD--HLILNVEWSKPPQ 272
+ +AI +L+G + + +NV +PP+
Sbjct: 294 DVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 213 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 272
+ FG V + +K+TG K F +V + +A A AI +NG L V+ +
Sbjct: 370 QSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSN 429
Query: 273 N 273
N
Sbjct: 430 N 430
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 191 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 250
VT I + NL+ D+ + FG V + E G KG+ ++ F+ +A+
Sbjct: 11 VTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
Query: 251 QS 252
Q+
Sbjct: 71 QN 72
>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
putative Strong similarity to gb|Y18349 U2 snRNP
auxiliary factor, small subunit from Oryza sativa. ESTs
gb|AA586295 and gb|AA597332 come from this gene
Length = 296
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 207 DIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 258
D+ + + FG + L + + H G YV FK AA A+Q+L G Y
Sbjct: 84 DLFEELGKFGEIESLNIC-DNLADHMIGNVYVQFKEEDQAAAALQALQGRFY 134
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 231 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEW 267
H KG YVH++ A A QS+NG + +N E+
Sbjct: 333 HLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEF 369
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 233 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 271
KG +V F R A AI+SLNG + + W + P
Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP 394
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 166 SNKYIP---PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLY 222
+N ++P P++AGR+ + P + + N+++ ++++ L + FG + LY
Sbjct: 158 ANAFVPRKRPNTAGRVSV--EHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLY 215
Query: 223 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQN 273
A + +GF + + A A+++L L++ +S P +N
Sbjct: 216 TACKS-----RGFVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPKEN 261
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 166 SNKYIP---PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLY 222
+N ++P P++AGR+ + P + + N+++ ++++ L + FG + LY
Sbjct: 171 ANAFVPRKRPNTAGRVSV--EHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLY 228
Query: 223 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQN 273
A + +GF + + A A+++L L++ +S P +N
Sbjct: 229 TACKS-----RGFVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPKEN 274
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
I +SN+S + + FG + + L +K+TG KGFA ++ A KA++
Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 254
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 254
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 186 VRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRAD 245
+R + I + +S E + + +G V + ++ TG +GFA+V F +
Sbjct: 28 IRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEE 87
Query: 246 AAKAIQ 251
A+ A+Q
Sbjct: 88 ASNAMQ 93
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 254
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPN 79
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 228 STGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN 274
S G + A+V FK A A++A + LNG + +L V+ + P +N
Sbjct: 60 SGGKLRNAAFVDFKNEAFASQAHRQLNGLRFLGKVLQVQRANKPNDN 106
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 181 RDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 240
++ P + A+ ++NL + +++ LVK +G V ++ + T H Y+ F
Sbjct: 291 KENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKEI-----RRTMHDNSQIYIEF 345
Query: 241 KFRADAAKAIQSLNG 255
AA A+ LNG
Sbjct: 346 FDVRAAAAALGGLNG 360
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 240
I +S E + D FG V + + K+++TG +GF +V F
Sbjct: 10 IGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 240
I +S E + D FG V + + K+++TG +GF +V F
Sbjct: 10 IGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA-IQSLNGHGYDHLIL 263
E + + FG V + + K+++TG +GF +V F AD A A I H D ++
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF---ADPAVAEIVITEKHNIDGRLV 75
Query: 264 NVEWSKP 270
+ + P
Sbjct: 76 EAKKAVP 82
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 205 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA-IQSLNGHGYDHLIL 263
E + + FG V + + K+++TG +GF +V F AD A A I H D ++
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF---ADPAVAEIVITEKHNIDGRLV 75
Query: 264 NVEWSKP 270
+ + P
Sbjct: 76 EAKKAVP 82
>At5g39690.1 68418.m04806 no apical meristem (NAM) protein-related
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to NAC domain protein NAC2
(GI:21554255) {Arabidopsis thaliana}
Length = 294
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 25 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 84
PSE V+ ++ EY D++N KV++ + +K + + K K G+ G
Sbjct: 113 PSEDVKTDW-LMQEYSLDHNNDKVRLHFVQDLSYSTSNKEVGEEKKKQKKGEPVEASEGQ 171
Query: 85 NP 86
P
Sbjct: 172 QP 173
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 196 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
+ N+ + + ++ L K FG V L+ A G +GF V + A KA ++L+G
Sbjct: 215 VRNVDSSIEDCELGVLFKQFGDVRALHTA-----GKNRGFIMVSYYDIRAAQKAARALHG 269
Query: 256 HGYDHLILNVEWSKPPQN 273
L++ +S P +N
Sbjct: 270 RLLRGRKLDIRYSIPKEN 287
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 7 FQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIA 66
F+ W +++ + + E + N + + + ++++ + + + I+
Sbjct: 457 FKKKWGNDLRFE-AIERKEREGLLNERVLSLKRSAEQKAQEIRAAAASDFKTMLREREIS 515
Query: 67 KRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGEL 114
WSK DS ++P E + ++I + +QR DD E+
Sbjct: 516 INSHWSKVKDSLRNEPRYRSVAHEDREVFYYEYIAELKAAQRGDDHEM 563
>At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putative
/ O-acetylserine (thiol)-lyase, putative /
O-acetylserine sulfhydrylase, putative identical to
SP|O22682 Probable cysteine synthase, chloroplast
precursor {Arabidopsis thaliana}, similar to SP|P31300
Cysteine synthase, chloroplast precursor {Capsicum
annuum}
Length = 404
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 39 YKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAED 94
+ + +D+ VRT + VV K T +K KP P P T VAE+
Sbjct: 34 FSFHHDSSSSLAVRT-PVSSFVVGAISGKSSTGTKSKSKTKRKPPPPPPVTTVAEE 88
>At2g30960.1 68415.m03776 expressed protein
Length = 260
Score = 28.7 bits (61), Expect = 4.5
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 15/106 (14%)
Query: 21 VLPPPSEVVENG--LKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI----AKR-KTWSK 73
++PP S V EN +K V + K +I ++ IE + + SI AK KT +K
Sbjct: 160 IVPPESVVTENNTPVKDVVPVYWMKATKSKEITKSMAIETQFENFSINRGEAKTLKTQTK 219
Query: 74 FGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKP 119
+ ++P P A+++ M ++ KE+++R DG G+KP
Sbjct: 220 W--RYRNRPMPRGASSST-----MVWV-KKEQNERAGDGIASGVKP 257
>At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 538
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 232 CKGFAYVHFKFRADAAKAIQSLNG 255
CKGFA+V FK DA + ++ G
Sbjct: 232 CKGFAHVDFKTEIDANRFVKQFTG 255
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 198 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN--G 255
N A E D++ L + +G V ++ + GFA+V+ + DA AI++L+
Sbjct: 8 NFEYDAREGDLERLFRKYGKVERVDMKA--------GFAFVYMEDERDAEDAIRALDRFE 59
Query: 256 HGYDHLILNVEWSK 269
G L VEW+K
Sbjct: 60 FGRKGRRLRVEWTK 73
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 226 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 255
E++TG +GF ++ F+ + A+ ++NG
Sbjct: 253 ERNTGRSRGFGFISFESAENVQSALATMNG 282
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 194 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 253
+ + NL+ + +++L G V +++ T GF +V F D AI +L
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238
Query: 254 N 254
N
Sbjct: 239 N 239
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 215 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 251
FG V ++ + +EK+TG +GF +V F A + +Q
Sbjct: 29 FGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 188 REDVTAIRISNLSNFAVEADIDDLVKGF----GPVHKLYLAKEKSTGHCKGFAYVHFKFR 243
+EDV+ R+ +++N A + + F G V + + + T H KG A+V F +
Sbjct: 437 QEDVSESRVIHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATK 496
Query: 244 ADAAKAIQSLNG 255
KA+ +L+G
Sbjct: 497 ESVGKAV-ALSG 507
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/63 (20%), Positives = 30/63 (47%)
Query: 204 VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLIL 263
+++ + FG + ++++ TG G+AY+ K A+ A + + G+D ++
Sbjct: 250 IKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGAEKALELGRHDVGGWDLVVG 309
Query: 264 NVE 266
E
Sbjct: 310 KAE 312
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 190 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 240
D+ + I +S E + D +G V + + ++++TG +GF ++ F
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 190 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 240
D+ + I +S E + D +G V + + ++++TG +GF ++ F
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 190 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 240
D+ + I +S E + D +G V + + ++++TG +GF ++ F
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At4g20720.1 68417.m03011 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 729
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 71 WSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCRT 130
W+ F SA+ K NP + + F F ++ + +D + ++V+
Sbjct: 525 WNDFASSANSKTPNNPLSQTMESSQFEIFYGHAQDKNGVKEQSVDEKQNTDTSVMSDIGK 584
Query: 131 CQGDHL 136
CQ D L
Sbjct: 585 CQEDDL 590
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 192 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKG--FAYVHFKFRADAAKA 249
T+I ++NL A+ + +L K FGP+ + + S G+ F ++ F+ A
Sbjct: 280 TSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETVASVQSV 339
Query: 250 IQS 252
+Q+
Sbjct: 340 LQA 342
>At1g05090.1 68414.m00512 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 706
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 71 WSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCRT 130
W+ F SA+ K NP + + F F ++ + +D + ++V+
Sbjct: 502 WNDFASSANSKTPNNPLSQTMESSQFEIFYGHAQDKNGVKEQSVDEKQNTDTSVMSDIGK 561
Query: 131 CQGDHL 136
CQ D L
Sbjct: 562 CQEDDL 567
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.133 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,941,184
Number of Sequences: 28952
Number of extensions: 278860
Number of successful extensions: 797
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 220
length of query: 274
length of database: 12,070,560
effective HSP length: 80
effective length of query: 194
effective length of database: 9,754,400
effective search space: 1892353600
effective search space used: 1892353600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)
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